data_1OVG
#
_model_server_result.job_id            UmkF3Y97_XXqxJ95UIDCnA 
_model_server_result.datetime_utc      '2024-11-22 22:39:06' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1ovg 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":246}' 
#
_entry.id    1OVG 
#
_exptl.entry_id    1OVG 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              250.254 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            9-(2-DEOXY-BETA-D-RIBOFURANOSYL)-6-METHYLPURINE 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            1OVG 
_cell.length_a            120.8 
_cell.length_b            120.8 
_cell.length_c            240.15 
_cell.Z_PDB               36 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1OVG 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        178 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 61 2 2' 
#
_pdbx_struct_assembly.method_details        PISA,PQS 
_pdbx_struct_assembly.oligomeric_details    hexameric 
_pdbx_struct_assembly.oligomeric_count      6 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 12_555 x,x-y,-z+1/6 0.5 0.866025 0 0.866025 -0.5 0 0 0 -1 0 0 40.025 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 E N N 
? 3 G N N 
? 3 I N N 
#
_chem_comp.formula           'C11 H14 N4 O3' 
_chem_comp.formula_weight    250.254 
_chem_comp.id                MDR 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              9-(2-DEOXY-BETA-D-RIBOFURANOSYL)-6-METHYLPURINE 
_chem_comp.type              'dna linking' 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C6' C6 MDR sing 218 n n 
C6' "H6'1" MDR sing 219 n n 
C6' "H6'2" MDR sing 220 n n 
C6' "H6'3" MDR sing 221 n n 
C6 N1 MDR doub 222 n y 
C6 C5 MDR sing 223 n y 
N1 C2 MDR sing 224 n y 
C2 N3 MDR doub 225 n y 
C2 H2 MDR sing 226 n n 
N3 C4 MDR sing 227 n y 
C4 C5 MDR doub 228 n y 
C4 N9 MDR sing 229 n y 
C5 N7 MDR sing 230 n y 
N7 C8 MDR doub 231 n y 
C8 N9 MDR sing 232 n y 
C8 H8 MDR sing 233 n n 
N9 C1' MDR sing 234 n n 
C1' C2' MDR sing 235 n n 
C1' O4' MDR sing 236 n n 
C1' H1' MDR sing 237 n n 
C2' C3' MDR sing 238 n n 
C2' "H2'1" MDR sing 239 n n 
C2' "H2'2" MDR sing 240 n n 
C3' O3' MDR sing 241 n n 
C3' C4' MDR sing 242 n n 
C3' H3' MDR sing 243 n n 
O3' H1 MDR sing 244 n n 
C4' C5' MDR sing 245 n n 
C4' O4' MDR sing 246 n n 
C4' H4' MDR sing 247 n n 
C5' O5' MDR sing 248 n n 
C5' "H5'1" MDR sing 249 n n 
C5' "H5'2" MDR sing 250 n n 
O5' H5' MDR sing 251 n n 
#
_atom_sites.entry_id                     1OVG 
_atom_sites.fract_transf_matrix[1][1]    0.008278 
_atom_sites.fract_transf_matrix[1][2]    0.004779 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009559 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004164 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 2 PO4 A 1 248 247 PO4 PO4 . 
E 3 MDR A 1 245 245 MDR MDR . 
F 2 PO4 B 1 249 247 PO4 PO4 . 
G 3 MDR B 1 246 245 MDR MDR . 
H 2 PO4 C 1 250 247 PO4 PO4 . 
I 3 MDR C 1 247 245 MDR MDR . 
J 4 HOH A 1 249 1 HOH TIP . 
J 4 HOH A 2 250 5 HOH TIP . 
J 4 HOH A 3 251 8 HOH TIP . 
J 4 HOH A 4 252 15 HOH TIP . 
J 4 HOH A 5 253 16 HOH TIP . 
J 4 HOH A 6 254 29 HOH TIP . 
J 4 HOH A 7 255 32 HOH TIP . 
J 4 HOH A 8 256 33 HOH TIP . 
J 4 HOH A 9 257 34 HOH TIP . 
J 4 HOH A 10 258 35 HOH TIP . 
J 4 HOH A 11 259 37 HOH TIP . 
J 4 HOH A 12 260 38 HOH TIP . 
J 4 HOH A 13 261 39 HOH TIP . 
J 4 HOH A 14 262 43 HOH TIP . 
J 4 HOH A 15 263 45 HOH TIP . 
J 4 HOH A 16 264 47 HOH TIP . 
J 4 HOH A 17 265 48 HOH TIP . 
J 4 HOH A 18 266 49 HOH TIP . 
J 4 HOH A 19 267 52 HOH TIP . 
J 4 HOH A 20 268 55 HOH TIP . 
J 4 HOH A 21 269 56 HOH TIP . 
J 4 HOH A 22 270 59 HOH TIP . 
J 4 HOH A 23 271 60 HOH TIP . 
J 4 HOH A 24 272 61 HOH TIP . 
J 4 HOH A 25 273 63 HOH TIP . 
J 4 HOH A 26 274 67 HOH TIP . 
J 4 HOH A 27 275 71 HOH TIP . 
J 4 HOH A 28 276 73 HOH TIP . 
J 4 HOH A 29 277 74 HOH TIP . 
J 4 HOH A 30 278 79 HOH TIP . 
J 4 HOH A 31 279 80 HOH TIP . 
J 4 HOH A 32 280 81 HOH TIP . 
J 4 HOH A 33 281 85 HOH TIP . 
J 4 HOH A 34 282 88 HOH TIP . 
J 4 HOH A 35 283 91 HOH TIP . 
J 4 HOH A 36 284 93 HOH TIP . 
J 4 HOH A 37 285 94 HOH TIP . 
J 4 HOH A 38 286 103 HOH TIP . 
J 4 HOH A 39 287 105 HOH TIP . 
J 4 HOH A 40 288 106 HOH TIP . 
J 4 HOH A 41 289 110 HOH TIP . 
J 4 HOH A 42 290 112 HOH TIP . 
J 4 HOH A 43 291 115 HOH TIP . 
J 4 HOH A 44 292 119 HOH TIP . 
J 4 HOH A 45 293 120 HOH TIP . 
J 4 HOH A 46 294 123 HOH TIP . 
J 4 HOH A 47 295 125 HOH TIP . 
J 4 HOH A 48 296 127 HOH TIP . 
J 4 HOH A 49 297 132 HOH TIP . 
J 4 HOH A 50 298 134 HOH TIP . 
J 4 HOH A 51 299 136 HOH TIP . 
J 4 HOH A 52 300 139 HOH TIP . 
J 4 HOH A 53 301 141 HOH TIP . 
J 4 HOH A 54 302 146 HOH TIP . 
J 4 HOH A 55 303 147 HOH TIP . 
J 4 HOH A 56 304 150 HOH TIP . 
J 4 HOH A 57 305 152 HOH TIP . 
J 4 HOH A 58 306 154 HOH TIP . 
J 4 HOH A 59 307 155 HOH TIP . 
J 4 HOH A 60 308 156 HOH TIP . 
J 4 HOH A 61 309 158 HOH TIP . 
J 4 HOH A 62 310 159 HOH TIP . 
J 4 HOH A 63 311 163 HOH TIP . 
J 4 HOH A 64 312 164 HOH TIP . 
J 4 HOH A 65 313 170 HOH TIP . 
J 4 HOH A 66 314 174 HOH TIP . 
J 4 HOH A 67 315 175 HOH TIP . 
J 4 HOH A 68 316 176 HOH TIP . 
J 4 HOH A 69 317 177 HOH TIP . 
J 4 HOH A 70 318 184 HOH TIP . 
J 4 HOH A 71 319 193 HOH TIP . 
J 4 HOH A 72 320 195 HOH TIP . 
J 4 HOH A 73 321 197 HOH TIP . 
J 4 HOH A 74 322 202 HOH TIP . 
J 4 HOH A 75 323 207 HOH TIP . 
J 4 HOH A 76 324 214 HOH TIP . 
J 4 HOH A 77 325 216 HOH TIP . 
J 4 HOH A 78 326 217 HOH TIP . 
J 4 HOH A 79 327 218 HOH TIP . 
J 4 HOH A 80 328 219 HOH TIP . 
J 4 HOH A 81 329 225 HOH TIP . 
J 4 HOH A 82 330 227 HOH TIP . 
K 4 HOH B 1 250 3 HOH TIP . 
K 4 HOH B 2 251 6 HOH TIP . 
K 4 HOH B 3 252 12 HOH TIP . 
K 4 HOH B 4 253 13 HOH TIP . 
K 4 HOH B 5 254 14 HOH TIP . 
K 4 HOH B 6 255 18 HOH TIP . 
K 4 HOH B 7 256 19 HOH TIP . 
K 4 HOH B 8 257 20 HOH TIP . 
K 4 HOH B 9 258 22 HOH TIP . 
K 4 HOH B 10 259 23 HOH TIP . 
K 4 HOH B 11 260 25 HOH TIP . 
K 4 HOH B 12 261 26 HOH TIP . 
K 4 HOH B 13 262 27 HOH TIP . 
K 4 HOH B 14 263 30 HOH TIP . 
K 4 HOH B 15 264 31 HOH TIP . 
K 4 HOH B 16 265 41 HOH TIP . 
K 4 HOH B 17 266 42 HOH TIP . 
K 4 HOH B 18 267 44 HOH TIP . 
K 4 HOH B 19 268 53 HOH TIP . 
K 4 HOH B 20 269 57 HOH TIP . 
K 4 HOH B 21 270 65 HOH TIP . 
K 4 HOH B 22 271 66 HOH TIP . 
K 4 HOH B 23 272 68 HOH TIP . 
K 4 HOH B 24 273 70 HOH TIP . 
K 4 HOH B 25 274 82 HOH TIP . 
K 4 HOH B 26 275 83 HOH TIP . 
K 4 HOH B 27 276 86 HOH TIP . 
K 4 HOH B 28 277 87 HOH TIP . 
K 4 HOH B 29 278 90 HOH TIP . 
K 4 HOH B 30 279 96 HOH TIP . 
K 4 HOH B 31 280 97 HOH TIP . 
K 4 HOH B 32 281 98 HOH TIP . 
K 4 HOH B 33 282 99 HOH TIP . 
K 4 HOH B 34 283 100 HOH TIP . 
K 4 HOH B 35 284 107 HOH TIP . 
K 4 HOH B 36 285 108 HOH TIP . 
K 4 HOH B 37 286 109 HOH TIP . 
K 4 HOH B 38 287 114 HOH TIP . 
K 4 HOH B 39 288 117 HOH TIP . 
K 4 HOH B 40 289 121 HOH TIP . 
K 4 HOH B 41 290 122 HOH TIP . 
K 4 HOH B 42 291 128 HOH TIP . 
K 4 HOH B 43 292 129 HOH TIP . 
K 4 HOH B 44 293 131 HOH TIP . 
K 4 HOH B 45 294 135 HOH TIP . 
K 4 HOH B 46 295 137 HOH TIP . 
K 4 HOH B 47 296 140 HOH TIP . 
K 4 HOH B 48 297 143 HOH TIP . 
K 4 HOH B 49 298 148 HOH TIP . 
K 4 HOH B 50 299 161 HOH TIP . 
K 4 HOH B 51 300 162 HOH TIP . 
K 4 HOH B 52 301 171 HOH TIP . 
K 4 HOH B 53 302 179 HOH TIP . 
K 4 HOH B 54 303 180 HOH TIP . 
K 4 HOH B 55 304 181 HOH TIP . 
K 4 HOH B 56 305 183 HOH TIP . 
K 4 HOH B 57 306 186 HOH TIP . 
K 4 HOH B 58 307 187 HOH TIP . 
K 4 HOH B 59 308 189 HOH TIP . 
K 4 HOH B 60 309 194 HOH TIP . 
K 4 HOH B 61 310 200 HOH TIP . 
K 4 HOH B 62 311 203 HOH TIP . 
K 4 HOH B 63 312 204 HOH TIP . 
K 4 HOH B 64 313 205 HOH TIP . 
K 4 HOH B 65 314 206 HOH TIP . 
K 4 HOH B 66 315 211 HOH TIP . 
K 4 HOH B 67 316 213 HOH TIP . 
K 4 HOH B 68 317 215 HOH TIP . 
K 4 HOH B 69 318 220 HOH TIP . 
K 4 HOH B 70 319 221 HOH TIP . 
K 4 HOH B 71 320 223 HOH TIP . 
K 4 HOH B 72 321 224 HOH TIP . 
K 4 HOH B 73 322 226 HOH TIP . 
L 4 HOH C 1 251 2 HOH TIP . 
L 4 HOH C 2 252 4 HOH TIP . 
L 4 HOH C 3 253 7 HOH TIP . 
L 4 HOH C 4 254 9 HOH TIP . 
L 4 HOH C 5 255 10 HOH TIP . 
L 4 HOH C 6 256 11 HOH TIP . 
L 4 HOH C 7 257 17 HOH TIP . 
L 4 HOH C 8 258 21 HOH TIP . 
L 4 HOH C 9 259 28 HOH TIP . 
L 4 HOH C 10 260 36 HOH TIP . 
L 4 HOH C 11 261 40 HOH TIP . 
L 4 HOH C 12 262 46 HOH TIP . 
L 4 HOH C 13 263 50 HOH TIP . 
L 4 HOH C 14 264 51 HOH TIP . 
L 4 HOH C 15 265 54 HOH TIP . 
L 4 HOH C 16 266 58 HOH TIP . 
L 4 HOH C 17 267 62 HOH TIP . 
L 4 HOH C 18 268 64 HOH TIP . 
L 4 HOH C 19 269 69 HOH TIP . 
L 4 HOH C 20 270 72 HOH TIP . 
L 4 HOH C 21 271 75 HOH TIP . 
L 4 HOH C 22 272 76 HOH TIP . 
L 4 HOH C 23 273 77 HOH TIP . 
L 4 HOH C 24 274 78 HOH TIP . 
L 4 HOH C 25 275 84 HOH TIP . 
L 4 HOH C 26 276 89 HOH TIP . 
L 4 HOH C 27 277 92 HOH TIP . 
L 4 HOH C 28 278 95 HOH TIP . 
L 4 HOH C 29 279 101 HOH TIP . 
L 4 HOH C 30 280 102 HOH TIP . 
L 4 HOH C 31 281 104 HOH TIP . 
L 4 HOH C 32 282 111 HOH TIP . 
L 4 HOH C 33 283 113 HOH TIP . 
L 4 HOH C 34 284 116 HOH TIP . 
L 4 HOH C 35 285 118 HOH TIP . 
L 4 HOH C 36 286 124 HOH TIP . 
L 4 HOH C 37 287 126 HOH TIP . 
L 4 HOH C 38 288 130 HOH TIP . 
L 4 HOH C 39 289 133 HOH TIP . 
L 4 HOH C 40 290 138 HOH TIP . 
L 4 HOH C 41 291 142 HOH TIP . 
L 4 HOH C 42 292 144 HOH TIP . 
L 4 HOH C 43 293 145 HOH TIP . 
L 4 HOH C 44 294 149 HOH TIP . 
L 4 HOH C 45 295 151 HOH TIP . 
L 4 HOH C 46 296 153 HOH TIP . 
L 4 HOH C 47 297 157 HOH TIP . 
L 4 HOH C 48 298 160 HOH TIP . 
L 4 HOH C 49 299 165 HOH TIP . 
L 4 HOH C 50 300 166 HOH TIP . 
L 4 HOH C 51 301 167 HOH TIP . 
L 4 HOH C 52 302 168 HOH TIP . 
L 4 HOH C 53 303 169 HOH TIP . 
L 4 HOH C 54 304 172 HOH TIP . 
L 4 HOH C 55 305 173 HOH TIP . 
L 4 HOH C 56 306 178 HOH TIP . 
L 4 HOH C 57 307 182 HOH TIP . 
L 4 HOH C 58 308 185 HOH TIP . 
L 4 HOH C 59 309 188 HOH TIP . 
L 4 HOH C 60 310 190 HOH TIP . 
L 4 HOH C 61 311 191 HOH TIP . 
L 4 HOH C 62 312 192 HOH TIP . 
L 4 HOH C 63 313 196 HOH TIP . 
L 4 HOH C 64 314 198 HOH TIP . 
L 4 HOH C 65 315 199 HOH TIP . 
L 4 HOH C 66 316 201 HOH TIP . 
L 4 HOH C 67 317 208 HOH TIP . 
L 4 HOH C 68 318 209 HOH TIP . 
L 4 HOH C 69 319 210 HOH TIP . 
L 4 HOH C 70 320 212 HOH TIP . 
L 4 HOH C 71 321 222 HOH TIP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C6' MDR . . . G 3 73.248 38.295 -5.983 1 25.6 ? C6' MDR 246 B 1 
HETATM 2 C C6 MDR . . . G 3 73.492 37.192 -4.995 1 28.65 ? C6 MDR 246 B 1 
HETATM 3 N N1 MDR . . . G 3 73.195 37.274 -3.628 1 26.54 ? N1 MDR 246 B 1 
HETATM 4 C C2 MDR . . . G 3 73.453 36.215 -2.804 1 26.38 ? C2 MDR 246 B 1 
HETATM 5 N N3 MDR . . . G 3 73.996 35.034 -3.217 1 26.66 ? N3 MDR 246 B 1 
HETATM 6 C C4 MDR . . . G 3 74.282 34.989 -4.599 1 28.19 ? C4 MDR 246 B 1 
HETATM 7 C C5 MDR . . . G 3 74.055 36.014 -5.517 1 28.16 ? C5 MDR 246 B 1 
HETATM 8 N N7 MDR . . . G 3 74.445 35.656 -6.799 1 28.11 ? N7 MDR 246 B 1 
HETATM 9 C C8 MDR . . . G 3 74.883 34.453 -6.628 1 28.63 ? C8 MDR 246 B 1 
HETATM 10 N N9 MDR . . . G 3 74.838 33.951 -5.383 1 27.88 ? N9 MDR 246 B 1 
HETATM 11 C C1' MDR . . . G 3 75.318 32.587 -5.117 1 28.84 ? C1' MDR 246 B 1 
HETATM 12 C C2' MDR . . . G 3 75.547 32.025 -3.691 1 28.34 ? C2' MDR 246 B 1 
HETATM 13 C C3' MDR . . . G 3 74.474 31.018 -3.396 1 29.07 ? C3' MDR 246 B 1 
HETATM 14 O O3' MDR . . . G 3 75.095 29.77 -3.078 1 25.4 ? O3' MDR 246 B 1 
HETATM 15 C C4' MDR . . . G 3 73.64 30.991 -4.667 1 28.56 ? C4' MDR 246 B 1 
HETATM 16 C C5' MDR . . . G 3 72.23 31.596 -4.464 1 27.24 ? C5' MDR 246 B 1 
HETATM 17 O O5' MDR . . . G 3 71.517 31.766 -5.701 1 25.82 ? O5' MDR 246 B 1 
HETATM 18 O O4' MDR . . . G 3 74.371 31.652 -5.71 1 29.49 ? O4' MDR 246 B 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           269 
_model_server_stats.encode_time_ms          8 
_model_server_stats.element_count           18 
#