data_1OVG # _model_server_result.job_id CnRPvLN4uMsZQEphzecNnw _model_server_result.datetime_utc '2024-11-08 04:16:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1ovg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":247}' # _entry.id 1OVG # _exptl.entry_id 1OVG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 250.254 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 9-(2-DEOXY-BETA-D-RIBOFURANOSYL)-6-METHYLPURINE _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1OVG _cell.length_a 120.8 _cell.length_b 120.8 _cell.length_c 240.15 _cell.Z_PDB 36 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1OVG _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 12_555 x,x-y,-z+1/6 0.5 0.866025 0 0.866025 -0.5 0 0 0 -1 0 0 40.025 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 G N N ? 3 I N N # _chem_comp.formula 'C11 H14 N4 O3' _chem_comp.formula_weight 250.254 _chem_comp.id MDR _chem_comp.mon_nstd_flag . _chem_comp.name 9-(2-DEOXY-BETA-D-RIBOFURANOSYL)-6-METHYLPURINE _chem_comp.type 'dna linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C6' C6 MDR sing 218 n n C6' "H6'1" MDR sing 219 n n C6' "H6'2" MDR sing 220 n n C6' "H6'3" MDR sing 221 n n C6 N1 MDR doub 222 n y C6 C5 MDR sing 223 n y N1 C2 MDR sing 224 n y C2 N3 MDR doub 225 n y C2 H2 MDR sing 226 n n N3 C4 MDR sing 227 n y C4 C5 MDR doub 228 n y C4 N9 MDR sing 229 n y C5 N7 MDR sing 230 n y N7 C8 MDR doub 231 n y C8 N9 MDR sing 232 n y C8 H8 MDR sing 233 n n N9 C1' MDR sing 234 n n C1' C2' MDR sing 235 n n C1' O4' MDR sing 236 n n C1' H1' MDR sing 237 n n C2' C3' MDR sing 238 n n C2' "H2'1" MDR sing 239 n n C2' "H2'2" MDR sing 240 n n C3' O3' MDR sing 241 n n C3' C4' MDR sing 242 n n C3' H3' MDR sing 243 n n O3' H1 MDR sing 244 n n C4' C5' MDR sing 245 n n C4' O4' MDR sing 246 n n C4' H4' MDR sing 247 n n C5' O5' MDR sing 248 n n C5' "H5'1" MDR sing 249 n n C5' "H5'2" MDR sing 250 n n O5' H5' MDR sing 251 n n # _atom_sites.entry_id 1OVG _atom_sites.fract_transf_matrix[1][1] 0.008278 _atom_sites.fract_transf_matrix[1][2] 0.004779 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009559 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004164 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 PO4 A 1 248 247 PO4 PO4 . E 3 MDR A 1 245 245 MDR MDR . F 2 PO4 B 1 249 247 PO4 PO4 . G 3 MDR B 1 246 245 MDR MDR . H 2 PO4 C 1 250 247 PO4 PO4 . I 3 MDR C 1 247 245 MDR MDR . J 4 HOH A 1 249 1 HOH TIP . J 4 HOH A 2 250 5 HOH TIP . J 4 HOH A 3 251 8 HOH TIP . J 4 HOH A 4 252 15 HOH TIP . J 4 HOH A 5 253 16 HOH TIP . J 4 HOH A 6 254 29 HOH TIP . J 4 HOH A 7 255 32 HOH TIP . J 4 HOH A 8 256 33 HOH TIP . J 4 HOH A 9 257 34 HOH TIP . J 4 HOH A 10 258 35 HOH TIP . J 4 HOH A 11 259 37 HOH TIP . J 4 HOH A 12 260 38 HOH TIP . J 4 HOH A 13 261 39 HOH TIP . J 4 HOH A 14 262 43 HOH TIP . J 4 HOH A 15 263 45 HOH TIP . J 4 HOH A 16 264 47 HOH TIP . J 4 HOH A 17 265 48 HOH TIP . J 4 HOH A 18 266 49 HOH TIP . J 4 HOH A 19 267 52 HOH TIP . J 4 HOH A 20 268 55 HOH TIP . J 4 HOH A 21 269 56 HOH TIP . J 4 HOH A 22 270 59 HOH TIP . J 4 HOH A 23 271 60 HOH TIP . J 4 HOH A 24 272 61 HOH TIP . J 4 HOH A 25 273 63 HOH TIP . J 4 HOH A 26 274 67 HOH TIP . J 4 HOH A 27 275 71 HOH TIP . J 4 HOH A 28 276 73 HOH TIP . J 4 HOH A 29 277 74 HOH TIP . J 4 HOH A 30 278 79 HOH TIP . J 4 HOH A 31 279 80 HOH TIP . J 4 HOH A 32 280 81 HOH TIP . J 4 HOH A 33 281 85 HOH TIP . J 4 HOH A 34 282 88 HOH TIP . J 4 HOH A 35 283 91 HOH TIP . J 4 HOH A 36 284 93 HOH TIP . J 4 HOH A 37 285 94 HOH TIP . J 4 HOH A 38 286 103 HOH TIP . J 4 HOH A 39 287 105 HOH TIP . J 4 HOH A 40 288 106 HOH TIP . J 4 HOH A 41 289 110 HOH TIP . J 4 HOH A 42 290 112 HOH TIP . J 4 HOH A 43 291 115 HOH TIP . J 4 HOH A 44 292 119 HOH TIP . J 4 HOH A 45 293 120 HOH TIP . J 4 HOH A 46 294 123 HOH TIP . J 4 HOH A 47 295 125 HOH TIP . J 4 HOH A 48 296 127 HOH TIP . J 4 HOH A 49 297 132 HOH TIP . J 4 HOH A 50 298 134 HOH TIP . J 4 HOH A 51 299 136 HOH TIP . J 4 HOH A 52 300 139 HOH TIP . J 4 HOH A 53 301 141 HOH TIP . J 4 HOH A 54 302 146 HOH TIP . J 4 HOH A 55 303 147 HOH TIP . J 4 HOH A 56 304 150 HOH TIP . J 4 HOH A 57 305 152 HOH TIP . J 4 HOH A 58 306 154 HOH TIP . J 4 HOH A 59 307 155 HOH TIP . J 4 HOH A 60 308 156 HOH TIP . J 4 HOH A 61 309 158 HOH TIP . J 4 HOH A 62 310 159 HOH TIP . J 4 HOH A 63 311 163 HOH TIP . J 4 HOH A 64 312 164 HOH TIP . J 4 HOH A 65 313 170 HOH TIP . J 4 HOH A 66 314 174 HOH TIP . J 4 HOH A 67 315 175 HOH TIP . J 4 HOH A 68 316 176 HOH TIP . J 4 HOH A 69 317 177 HOH TIP . J 4 HOH A 70 318 184 HOH TIP . J 4 HOH A 71 319 193 HOH TIP . J 4 HOH A 72 320 195 HOH TIP . J 4 HOH A 73 321 197 HOH TIP . J 4 HOH A 74 322 202 HOH TIP . J 4 HOH A 75 323 207 HOH TIP . J 4 HOH A 76 324 214 HOH TIP . J 4 HOH A 77 325 216 HOH TIP . J 4 HOH A 78 326 217 HOH TIP . J 4 HOH A 79 327 218 HOH TIP . J 4 HOH A 80 328 219 HOH TIP . J 4 HOH A 81 329 225 HOH TIP . J 4 HOH A 82 330 227 HOH TIP . K 4 HOH B 1 250 3 HOH TIP . K 4 HOH B 2 251 6 HOH TIP . K 4 HOH B 3 252 12 HOH TIP . K 4 HOH B 4 253 13 HOH TIP . K 4 HOH B 5 254 14 HOH TIP . K 4 HOH B 6 255 18 HOH TIP . K 4 HOH B 7 256 19 HOH TIP . K 4 HOH B 8 257 20 HOH TIP . K 4 HOH B 9 258 22 HOH TIP . K 4 HOH B 10 259 23 HOH TIP . K 4 HOH B 11 260 25 HOH TIP . K 4 HOH B 12 261 26 HOH TIP . K 4 HOH B 13 262 27 HOH TIP . K 4 HOH B 14 263 30 HOH TIP . K 4 HOH B 15 264 31 HOH TIP . K 4 HOH B 16 265 41 HOH TIP . K 4 HOH B 17 266 42 HOH TIP . K 4 HOH B 18 267 44 HOH TIP . K 4 HOH B 19 268 53 HOH TIP . K 4 HOH B 20 269 57 HOH TIP . K 4 HOH B 21 270 65 HOH TIP . K 4 HOH B 22 271 66 HOH TIP . K 4 HOH B 23 272 68 HOH TIP . K 4 HOH B 24 273 70 HOH TIP . K 4 HOH B 25 274 82 HOH TIP . K 4 HOH B 26 275 83 HOH TIP . K 4 HOH B 27 276 86 HOH TIP . K 4 HOH B 28 277 87 HOH TIP . K 4 HOH B 29 278 90 HOH TIP . K 4 HOH B 30 279 96 HOH TIP . K 4 HOH B 31 280 97 HOH TIP . K 4 HOH B 32 281 98 HOH TIP . K 4 HOH B 33 282 99 HOH TIP . K 4 HOH B 34 283 100 HOH TIP . K 4 HOH B 35 284 107 HOH TIP . K 4 HOH B 36 285 108 HOH TIP . K 4 HOH B 37 286 109 HOH TIP . K 4 HOH B 38 287 114 HOH TIP . K 4 HOH B 39 288 117 HOH TIP . K 4 HOH B 40 289 121 HOH TIP . K 4 HOH B 41 290 122 HOH TIP . K 4 HOH B 42 291 128 HOH TIP . K 4 HOH B 43 292 129 HOH TIP . K 4 HOH B 44 293 131 HOH TIP . K 4 HOH B 45 294 135 HOH TIP . K 4 HOH B 46 295 137 HOH TIP . K 4 HOH B 47 296 140 HOH TIP . K 4 HOH B 48 297 143 HOH TIP . K 4 HOH B 49 298 148 HOH TIP . K 4 HOH B 50 299 161 HOH TIP . K 4 HOH B 51 300 162 HOH TIP . K 4 HOH B 52 301 171 HOH TIP . K 4 HOH B 53 302 179 HOH TIP . K 4 HOH B 54 303 180 HOH TIP . K 4 HOH B 55 304 181 HOH TIP . K 4 HOH B 56 305 183 HOH TIP . K 4 HOH B 57 306 186 HOH TIP . K 4 HOH B 58 307 187 HOH TIP . K 4 HOH B 59 308 189 HOH TIP . K 4 HOH B 60 309 194 HOH TIP . K 4 HOH B 61 310 200 HOH TIP . K 4 HOH B 62 311 203 HOH TIP . K 4 HOH B 63 312 204 HOH TIP . K 4 HOH B 64 313 205 HOH TIP . K 4 HOH B 65 314 206 HOH TIP . K 4 HOH B 66 315 211 HOH TIP . K 4 HOH B 67 316 213 HOH TIP . K 4 HOH B 68 317 215 HOH TIP . K 4 HOH B 69 318 220 HOH TIP . K 4 HOH B 70 319 221 HOH TIP . K 4 HOH B 71 320 223 HOH TIP . K 4 HOH B 72 321 224 HOH TIP . K 4 HOH B 73 322 226 HOH TIP . L 4 HOH C 1 251 2 HOH TIP . L 4 HOH C 2 252 4 HOH TIP . L 4 HOH C 3 253 7 HOH TIP . L 4 HOH C 4 254 9 HOH TIP . L 4 HOH C 5 255 10 HOH TIP . L 4 HOH C 6 256 11 HOH TIP . L 4 HOH C 7 257 17 HOH TIP . L 4 HOH C 8 258 21 HOH TIP . L 4 HOH C 9 259 28 HOH TIP . L 4 HOH C 10 260 36 HOH TIP . L 4 HOH C 11 261 40 HOH TIP . L 4 HOH C 12 262 46 HOH TIP . L 4 HOH C 13 263 50 HOH TIP . L 4 HOH C 14 264 51 HOH TIP . L 4 HOH C 15 265 54 HOH TIP . L 4 HOH C 16 266 58 HOH TIP . L 4 HOH C 17 267 62 HOH TIP . L 4 HOH C 18 268 64 HOH TIP . L 4 HOH C 19 269 69 HOH TIP . L 4 HOH C 20 270 72 HOH TIP . L 4 HOH C 21 271 75 HOH TIP . L 4 HOH C 22 272 76 HOH TIP . L 4 HOH C 23 273 77 HOH TIP . L 4 HOH C 24 274 78 HOH TIP . L 4 HOH C 25 275 84 HOH TIP . L 4 HOH C 26 276 89 HOH TIP . L 4 HOH C 27 277 92 HOH TIP . L 4 HOH C 28 278 95 HOH TIP . L 4 HOH C 29 279 101 HOH TIP . L 4 HOH C 30 280 102 HOH TIP . L 4 HOH C 31 281 104 HOH TIP . L 4 HOH C 32 282 111 HOH TIP . L 4 HOH C 33 283 113 HOH TIP . L 4 HOH C 34 284 116 HOH TIP . L 4 HOH C 35 285 118 HOH TIP . L 4 HOH C 36 286 124 HOH TIP . L 4 HOH C 37 287 126 HOH TIP . L 4 HOH C 38 288 130 HOH TIP . L 4 HOH C 39 289 133 HOH TIP . L 4 HOH C 40 290 138 HOH TIP . L 4 HOH C 41 291 142 HOH TIP . L 4 HOH C 42 292 144 HOH TIP . L 4 HOH C 43 293 145 HOH TIP . L 4 HOH C 44 294 149 HOH TIP . L 4 HOH C 45 295 151 HOH TIP . L 4 HOH C 46 296 153 HOH TIP . L 4 HOH C 47 297 157 HOH TIP . L 4 HOH C 48 298 160 HOH TIP . L 4 HOH C 49 299 165 HOH TIP . L 4 HOH C 50 300 166 HOH TIP . L 4 HOH C 51 301 167 HOH TIP . L 4 HOH C 52 302 168 HOH TIP . L 4 HOH C 53 303 169 HOH TIP . L 4 HOH C 54 304 172 HOH TIP . L 4 HOH C 55 305 173 HOH TIP . L 4 HOH C 56 306 178 HOH TIP . L 4 HOH C 57 307 182 HOH TIP . L 4 HOH C 58 308 185 HOH TIP . L 4 HOH C 59 309 188 HOH TIP . L 4 HOH C 60 310 190 HOH TIP . L 4 HOH C 61 311 191 HOH TIP . L 4 HOH C 62 312 192 HOH TIP . L 4 HOH C 63 313 196 HOH TIP . L 4 HOH C 64 314 198 HOH TIP . L 4 HOH C 65 315 199 HOH TIP . L 4 HOH C 66 316 201 HOH TIP . L 4 HOH C 67 317 208 HOH TIP . L 4 HOH C 68 318 209 HOH TIP . L 4 HOH C 69 319 210 HOH TIP . L 4 HOH C 70 320 212 HOH TIP . L 4 HOH C 71 321 222 HOH TIP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C6' MDR . . . I 3 51.154 53.219 23.106 1 34.47 ? C6' MDR 247 C 1 HETATM 2 C C6 MDR . . . I 3 51.768 52.333 24.136 1 29.58 ? C6 MDR 247 C 1 HETATM 3 N N1 MDR . . . I 3 53.136 52.017 24.196 1 29.16 ? N1 MDR 247 C 1 HETATM 4 C C2 MDR . . . I 3 53.604 51.191 25.178 1 28.27 ? C2 MDR 247 C 1 HETATM 5 N N3 MDR . . . I 3 52.823 50.625 26.142 1 28.15 ? N3 MDR 247 C 1 HETATM 6 C C4 MDR . . . I 3 51.451 50.965 26.051 1 30.26 ? C4 MDR 247 C 1 HETATM 7 C C5 MDR . . . I 3 50.884 51.799 25.088 1 30.08 ? C5 MDR 247 C 1 HETATM 8 N N7 MDR . . . I 3 49.519 51.939 25.263 1 29.84 ? N7 MDR 247 C 1 HETATM 9 C C8 MDR . . . I 3 49.292 51.206 26.298 1 29.67 ? C8 MDR 247 C 1 HETATM 10 N N9 MDR . . . I 3 50.34 50.578 26.859 1 32.12 ? N9 MDR 247 C 1 HETATM 11 C C1' MDR . . . I 3 50.141 49.715 28.049 1 32.38 ? C1' MDR 247 C 1 HETATM 12 C C2' MDR . . . I 3 51.256 48.84 28.672 1 34.33 ? C2' MDR 247 C 1 HETATM 13 C C3' MDR . . . I 3 51.701 49.459 29.946 1 33.47 ? C3' MDR 247 C 1 HETATM 14 O O3' MDR . . . I 3 51.803 48.425 30.927 1 37.14 ? O3' MDR 247 C 1 HETATM 15 C C4' MDR . . . I 3 50.618 50.476 30.247 1 34.58 ? C4' MDR 247 C 1 HETATM 16 C C5' MDR . . . I 3 51.199 51.863 30.596 1 33.1 ? C5' MDR 247 C 1 HETATM 17 O O5' MDR . . . I 3 50.223 52.912 30.473 1 35.82 ? O5' MDR 247 C 1 HETATM 18 O O4' MDR . . . I 3 49.689 50.55 29.15 1 33.53 ? O4' MDR 247 C 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 5 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 240 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 18 #