data_1OX4
#
_model_server_result.job_id            WexEQvISh3M4uBD74tIufg 
_model_server_result.datetime_utc      '2025-07-31 03:08:25' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1ox4 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":998}' 
#
_entry.id    1OX4 
#
_exptl.entry_id    1OX4 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              175.959 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PYROPHOSPHATE 2-' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1OX4 
_cell.length_a            98.5 
_cell.length_b            112 
_cell.length_c            115.3 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1OX4 
_symmetry.cell_setting             orthorhombic 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,K 1 1 
B,G,H,I,J,L 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 F N N 
? 5 J N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 B C ILE 85 B ILE 82 1_555 B N CYD 86 B CYD 83 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? 
covale ? covale2 B C CYD 86 B CYD 83 1_555 B N VAL 87 B VAL 84 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
metalc ? metalc1 A N GLY 1 A GLY -3 1_555 E NI NI . A NI 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? 
metalc ? metalc2 A N SER 2 A SER -2 1_555 E NI NI . A NI 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.985 ? 
metalc ? metalc3 A ND1 HIS 3 A HIS -1 1_555 E NI NI . A NI 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.014 ? 
metalc ? metalc4 A N HIS 3 A HIS -1 1_555 E NI NI . A NI 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.993 ? 
metalc ? metalc5 B N GLY 1 B GLY -3 1_555 I NI NI . B NI 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.113 ? 
metalc ? metalc6 B N SER 2 B SER -2 1_555 I NI NI . B NI 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? 
metalc ? metalc7 B ND1 HIS 3 B HIS -1 1_555 I NI NI . B NI 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.094 ? 
metalc ? metalc8 B N HIS 3 B HIS -1 1_555 I NI NI . B NI 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.103 ? 
#
_chem_comp.formula           'H2 O7 P2 -2' 
_chem_comp.formula_weight    175.959 
_chem_comp.id                POP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PYROPHOSPHATE 2-' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
P1 O1 POP doub 292 n n 
P1 O2 POP sing 293 n n 
P1 O3 POP sing 294 n n 
P1 O POP sing 295 n n 
O2 HO2 POP sing 296 n n 
O P2 POP sing 297 n n 
P2 O4 POP doub 298 n n 
P2 O5 POP sing 299 n n 
P2 O6 POP sing 300 n n 
O5 HO5 POP sing 301 n n 
#
_atom_sites.entry_id                     1OX4 
_atom_sites.fract_transf_matrix[1][1]    0.010152 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008922 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008672 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 SO4 A 1 801 801 SO4 SO4 . 
D 3 SO4 A 1 806 806 SO4 SO4 . 
E 4 NI A 1 902 902 NI NI . 
F 5 POP A 1 998 998 POP POP . 
G 3 SO4 B 1 803 803 SO4 SO4 . 
H 3 SO4 B 1 804 804 SO4 SO4 . 
I 4 NI B 1 901 901 NI NI . 
J 5 POP B 1 999 999 POP POP . 
K 6 HOH A 1 999 1 HOH HOH . 
K 6 HOH A 2 1000 2 HOH HOH . 
K 6 HOH A 3 1001 3 HOH HOH . 
K 6 HOH A 4 1002 4 HOH HOH . 
K 6 HOH A 5 1003 5 HOH HOH . 
K 6 HOH A 6 1004 6 HOH HOH . 
K 6 HOH A 7 1005 7 HOH HOH . 
K 6 HOH A 8 1006 10 HOH HOH . 
K 6 HOH A 9 1007 15 HOH HOH . 
K 6 HOH A 10 1008 16 HOH HOH . 
K 6 HOH A 11 1009 19 HOH HOH . 
K 6 HOH A 12 1010 23 HOH HOH . 
K 6 HOH A 13 1011 26 HOH HOH . 
K 6 HOH A 14 1012 28 HOH HOH . 
K 6 HOH A 15 1013 38 HOH HOH . 
K 6 HOH A 16 1014 41 HOH HOH . 
K 6 HOH A 17 1015 42 HOH HOH . 
K 6 HOH A 18 1016 43 HOH HOH . 
K 6 HOH A 19 1017 46 HOH HOH . 
K 6 HOH A 20 1018 48 HOH HOH . 
K 6 HOH A 21 1019 50 HOH HOH . 
K 6 HOH A 22 1020 53 HOH HOH . 
K 6 HOH A 23 1021 54 HOH HOH . 
K 6 HOH A 24 1022 55 HOH HOH . 
K 6 HOH A 25 1023 57 HOH HOH . 
K 6 HOH A 26 1024 65 HOH HOH . 
K 6 HOH A 27 1025 69 HOH HOH . 
K 6 HOH A 28 1026 83 HOH HOH . 
K 6 HOH A 29 1027 86 HOH HOH . 
K 6 HOH A 30 1028 89 HOH HOH . 
K 6 HOH A 31 1029 111 HOH HOH . 
K 6 HOH A 32 1030 121 HOH HOH . 
K 6 HOH A 33 1031 124 HOH HOH . 
K 6 HOH A 34 1032 127 HOH HOH . 
K 6 HOH A 35 1033 130 HOH HOH . 
K 6 HOH A 36 1034 136 HOH HOH . 
K 6 HOH A 37 1035 141 HOH HOH . 
K 6 HOH A 38 1036 146 HOH HOH . 
K 6 HOH A 39 1037 167 HOH HOH . 
K 6 HOH A 40 1038 185 HOH HOH . 
K 6 HOH A 41 1039 193 HOH HOH . 
K 6 HOH A 42 1040 204 HOH HOH . 
K 6 HOH A 43 1041 210 HOH HOH . 
K 6 HOH A 44 1042 234 HOH HOH . 
K 6 HOH A 45 1043 240 HOH HOH . 
K 6 HOH A 46 1044 272 HOH HOH . 
K 6 HOH A 47 1045 273 HOH HOH . 
K 6 HOH A 48 1046 302 HOH HOH . 
K 6 HOH A 49 1047 403 HOH HOH . 
K 6 HOH A 50 1048 1411 HOH HOH . 
K 6 HOH A 51 1049 1412 HOH HOH . 
K 6 HOH A 52 1050 1415 HOH HOH . 
K 6 HOH A 53 1051 1416 HOH HOH . 
K 6 HOH A 54 1052 1417 HOH HOH . 
K 6 HOH A 55 1053 1418 HOH HOH . 
K 6 HOH A 56 1054 1420 HOH HOH . 
K 6 HOH A 57 1055 1424 HOH HOH . 
K 6 HOH A 58 1056 1425 HOH HOH . 
K 6 HOH A 59 1057 1426 HOH HOH . 
K 6 HOH A 60 1058 1427 HOH HOH . 
K 6 HOH A 61 1059 1428 HOH HOH . 
K 6 HOH A 62 1060 1429 HOH HOH . 
K 6 HOH A 63 1061 1431 HOH HOH . 
K 6 HOH A 64 1062 1432 HOH HOH . 
K 6 HOH A 65 1063 1433 HOH HOH . 
K 6 HOH A 66 1064 1434 HOH HOH . 
K 6 HOH A 67 1065 1438 HOH HOH . 
K 6 HOH A 68 1066 1439 HOH HOH . 
K 6 HOH A 69 1067 1441 HOH HOH . 
K 6 HOH A 70 1068 1442 HOH HOH . 
K 6 HOH A 71 1069 1443 HOH HOH . 
K 6 HOH A 72 1070 1450 HOH HOH . 
K 6 HOH A 73 1071 1452 HOH HOH . 
K 6 HOH A 74 1072 1454 HOH HOH . 
K 6 HOH A 75 1073 1462 HOH HOH . 
K 6 HOH A 76 1074 1464 HOH HOH . 
K 6 HOH A 77 1075 1465 HOH HOH . 
K 6 HOH A 78 1076 1466 HOH HOH . 
K 6 HOH A 79 1077 1467 HOH HOH . 
K 6 HOH A 80 1078 1468 HOH HOH . 
K 6 HOH A 81 1079 1471 HOH HOH . 
K 6 HOH A 82 1080 1473 HOH HOH . 
K 6 HOH A 83 1081 1477 HOH HOH . 
K 6 HOH A 84 1082 1478 HOH HOH . 
K 6 HOH A 85 1083 1479 HOH HOH . 
K 6 HOH A 86 1084 1480 HOH HOH . 
K 6 HOH A 87 1085 1482 HOH HOH . 
K 6 HOH A 88 1086 1486 HOH HOH . 
K 6 HOH A 89 1087 1488 HOH HOH . 
K 6 HOH A 90 1088 1491 HOH HOH . 
K 6 HOH A 91 1089 1492 HOH HOH . 
K 6 HOH A 92 1090 1493 HOH HOH . 
K 6 HOH A 93 1091 1494 HOH HOH . 
K 6 HOH A 94 1092 1495 HOH HOH . 
K 6 HOH A 95 1093 1502 HOH HOH . 
K 6 HOH A 96 1094 1504 HOH HOH . 
K 6 HOH A 97 1095 1506 HOH HOH . 
K 6 HOH A 98 1096 1507 HOH HOH . 
L 6 HOH B 1 1000 8 HOH HOH . 
L 6 HOH B 2 1001 11 HOH HOH . 
L 6 HOH B 3 1002 12 HOH HOH . 
L 6 HOH B 4 1003 17 HOH HOH . 
L 6 HOH B 5 1004 18 HOH HOH . 
L 6 HOH B 6 1005 20 HOH HOH . 
L 6 HOH B 7 1006 22 HOH HOH . 
L 6 HOH B 8 1007 25 HOH HOH . 
L 6 HOH B 9 1008 29 HOH HOH . 
L 6 HOH B 10 1009 30 HOH HOH . 
L 6 HOH B 11 1010 31 HOH HOH . 
L 6 HOH B 12 1011 35 HOH HOH . 
L 6 HOH B 13 1012 37 HOH HOH . 
L 6 HOH B 14 1013 58 HOH HOH . 
L 6 HOH B 15 1014 61 HOH HOH . 
L 6 HOH B 16 1015 64 HOH HOH . 
L 6 HOH B 17 1016 66 HOH HOH . 
L 6 HOH B 18 1017 74 HOH HOH . 
L 6 HOH B 19 1018 75 HOH HOH . 
L 6 HOH B 20 1019 76 HOH HOH . 
L 6 HOH B 21 1020 78 HOH HOH . 
L 6 HOH B 22 1021 81 HOH HOH . 
L 6 HOH B 23 1022 88 HOH HOH . 
L 6 HOH B 24 1023 91 HOH HOH . 
L 6 HOH B 25 1024 115 HOH HOH . 
L 6 HOH B 26 1025 125 HOH HOH . 
L 6 HOH B 27 1026 131 HOH HOH . 
L 6 HOH B 28 1027 135 HOH HOH . 
L 6 HOH B 29 1028 165 HOH HOH . 
L 6 HOH B 30 1029 169 HOH HOH . 
L 6 HOH B 31 1030 196 HOH HOH . 
L 6 HOH B 32 1031 201 HOH HOH . 
L 6 HOH B 33 1032 243 HOH HOH . 
L 6 HOH B 34 1033 261 HOH HOH . 
L 6 HOH B 35 1034 276 HOH HOH . 
L 6 HOH B 36 1035 305 HOH HOH . 
L 6 HOH B 37 1036 354 HOH HOH . 
L 6 HOH B 38 1037 391 HOH HOH . 
L 6 HOH B 39 1038 404 HOH HOH . 
L 6 HOH B 40 1039 405 HOH HOH . 
L 6 HOH B 41 1040 407 HOH HOH . 
L 6 HOH B 42 1041 408 HOH HOH . 
L 6 HOH B 43 1042 1410 HOH HOH . 
L 6 HOH B 44 1043 1413 HOH HOH . 
L 6 HOH B 45 1044 1414 HOH HOH . 
L 6 HOH B 46 1045 1419 HOH HOH . 
L 6 HOH B 47 1046 1421 HOH HOH . 
L 6 HOH B 48 1047 1422 HOH HOH . 
L 6 HOH B 49 1048 1423 HOH HOH . 
L 6 HOH B 50 1049 1430 HOH HOH . 
L 6 HOH B 51 1050 1435 HOH HOH . 
L 6 HOH B 52 1051 1436 HOH HOH . 
L 6 HOH B 53 1052 1437 HOH HOH . 
L 6 HOH B 54 1053 1440 HOH HOH . 
L 6 HOH B 55 1054 1444 HOH HOH . 
L 6 HOH B 56 1055 1445 HOH HOH . 
L 6 HOH B 57 1056 1446 HOH HOH . 
L 6 HOH B 58 1057 1447 HOH HOH . 
L 6 HOH B 59 1058 1448 HOH HOH . 
L 6 HOH B 60 1059 1449 HOH HOH . 
L 6 HOH B 61 1060 1451 HOH HOH . 
L 6 HOH B 62 1061 1453 HOH HOH . 
L 6 HOH B 63 1062 1455 HOH HOH . 
L 6 HOH B 64 1063 1456 HOH HOH . 
L 6 HOH B 65 1064 1457 HOH HOH . 
L 6 HOH B 66 1065 1458 HOH HOH . 
L 6 HOH B 67 1066 1459 HOH HOH . 
L 6 HOH B 68 1067 1460 HOH HOH . 
L 6 HOH B 69 1068 1461 HOH HOH . 
L 6 HOH B 70 1069 1463 HOH HOH . 
L 6 HOH B 71 1070 1469 HOH HOH . 
L 6 HOH B 72 1071 1470 HOH HOH . 
L 6 HOH B 73 1072 1472 HOH HOH . 
L 6 HOH B 74 1073 1474 HOH HOH . 
L 6 HOH B 75 1074 1475 HOH HOH . 
L 6 HOH B 76 1075 1476 HOH HOH . 
L 6 HOH B 77 1076 1481 HOH HOH . 
L 6 HOH B 78 1077 1483 HOH HOH . 
L 6 HOH B 79 1078 1484 HOH HOH . 
L 6 HOH B 80 1079 1485 HOH HOH . 
L 6 HOH B 81 1080 1487 HOH HOH . 
L 6 HOH B 82 1081 1489 HOH HOH . 
L 6 HOH B 83 1082 1490 HOH HOH . 
L 6 HOH B 84 1083 1496 HOH HOH . 
L 6 HOH B 85 1084 1497 HOH HOH . 
L 6 HOH B 86 1085 1498 HOH HOH . 
L 6 HOH B 87 1086 1499 HOH HOH . 
L 6 HOH B 88 1087 1500 HOH HOH . 
L 6 HOH B 89 1088 1501 HOH HOH . 
L 6 HOH B 90 1089 1503 HOH HOH . 
L 6 HOH B 91 1090 1505 HOH HOH . 
L 6 HOH B 92 1091 1508 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P P1 POP . . . F 5 70.936 4.057 16.632 1 99.78 ? P1 POP 998 A 1 
HETATM 2 O O1 POP . . . F 5 70.781 5.431 17.205 1 99.55 ? O1 POP 998 A 1 
HETATM 3 O O2 POP . . . F 5 70.98 3.02 17.688 1 98.83 ? O2 POP 998 A 1 
HETATM 4 O O3 POP . . . F 5 72.143 3.969 15.742 1 99.46 ? O3 POP 998 A 1 
HETATM 5 O O POP . . . F 5 69.625 3.778 15.75 1 99.32 ? O POP 998 A 1 
HETATM 6 P P2 POP . . . F 5 69.146 3.633 14.216 1 99.06 ? P2 POP 998 A 1 
HETATM 7 O O4 POP . . . F 5 69.094 2.416 13.406 1 98.72 ? O4 POP 998 A 1 
HETATM 8 O O5 POP . . . F 5 67.709 3.774 14.598 1 98.28 ? O5 POP 998 A 1 
HETATM 9 O O6 POP . . . F 5 69.537 4.914 13.604 1 98.39 ? O6 POP 998 A 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    9 
_model_server_stats.query_time_ms           333 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           9 
#