data_1OX5 # _model_server_result.job_id qFFON84lKpZhXL5EOPQgBw _model_server_result.datetime_utc '2024-12-26 16:52:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1ox5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":902}' # _entry.id 1OX5 # _exptl.entry_id 1OX5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 58.693 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NICKEL (II) ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1OX5 _cell.length_a 98.8 _cell.length_b 111.5 _cell.length_c 117.2 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1OX5 _symmetry.cell_setting orthorhombic _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,F 1 1 B,E,G 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ILE 85 A ILE 82 1_555 A N 5CS 86 A 5CS 83 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.351 ? covale ? covale2 A C 5CS 86 A 5CS 83 1_555 A N VAL 87 A VAL 84 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale3 B C ILE 85 B ILE 82 1_555 B N 5CS 86 B 5CS 83 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.352 ? covale ? covale4 B C 5CS 86 B 5CS 83 1_555 B N VAL 87 B VAL 84 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? metalc ? metalc1 A N GLY 1 A GLY -3 1_555 C NI NI . A NI 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.077 ? metalc ? metalc2 A N SER 2 A SER -2 1_555 C NI NI . A NI 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.95 ? metalc ? metalc3 A N HIS 3 A HIS -1 1_555 C NI NI . A NI 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.935 ? metalc ? metalc4 A ND1 HIS 3 A HIS -1 1_555 C NI NI . A NI 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.999 ? # _chem_comp.formula 'Ni 2' _chem_comp.formula_weight 58.693 _chem_comp.id NI _chem_comp.mon_nstd_flag . _chem_comp.name 'NICKEL (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1OX5 _atom_sites.fract_transf_matrix[1][1] 0.010121 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008969 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008532 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NI A 1 902 902 NI NI . D 3 1PR A 1 991 991 1PR 1PR . E 3 1PR B 1 891 891 1PR 1PR . F 4 HOH A 1 992 1 HOH HOH . F 4 HOH A 2 993 2 HOH HOH . F 4 HOH A 3 994 3 HOH HOH . F 4 HOH A 4 995 4 HOH HOH . F 4 HOH A 5 996 5 HOH HOH . F 4 HOH A 6 997 6 HOH HOH . F 4 HOH A 7 998 7 HOH HOH . F 4 HOH A 8 999 9 HOH HOH . F 4 HOH A 9 1000 12 HOH HOH . F 4 HOH A 10 1001 13 HOH HOH . F 4 HOH A 11 1002 16 HOH HOH . F 4 HOH A 12 1003 19 HOH HOH . F 4 HOH A 13 1004 21 HOH HOH . F 4 HOH A 14 1005 22 HOH HOH . F 4 HOH A 15 1006 28 HOH HOH . F 4 HOH A 16 1007 29 HOH HOH . F 4 HOH A 17 1008 30 HOH HOH . F 4 HOH A 18 1009 31 HOH HOH . F 4 HOH A 19 1010 32 HOH HOH . F 4 HOH A 20 1011 33 HOH HOH . F 4 HOH A 21 1012 34 HOH HOH . F 4 HOH A 22 1013 35 HOH HOH . F 4 HOH A 23 1014 36 HOH HOH . F 4 HOH A 24 1015 37 HOH HOH . F 4 HOH A 25 1016 38 HOH HOH . F 4 HOH A 26 1017 42 HOH HOH . F 4 HOH A 27 1018 44 HOH HOH . F 4 HOH A 28 1019 50 HOH HOH . F 4 HOH A 29 1020 51 HOH HOH . F 4 HOH A 30 1021 53 HOH HOH . F 4 HOH A 31 1022 55 HOH HOH . F 4 HOH A 32 1023 57 HOH HOH . F 4 HOH A 33 1024 58 HOH HOH . F 4 HOH A 34 1025 60 HOH HOH . F 4 HOH A 35 1026 61 HOH HOH . F 4 HOH A 36 1027 64 HOH HOH . F 4 HOH A 37 1028 65 HOH HOH . F 4 HOH A 38 1029 66 HOH HOH . F 4 HOH A 39 1030 68 HOH HOH . F 4 HOH A 40 1031 70 HOH HOH . F 4 HOH A 41 1032 71 HOH HOH . F 4 HOH A 42 1033 72 HOH HOH . F 4 HOH A 43 1034 75 HOH HOH . F 4 HOH A 44 1035 76 HOH HOH . F 4 HOH A 45 1036 77 HOH HOH . F 4 HOH A 46 1037 78 HOH HOH . F 4 HOH A 47 1038 81 HOH HOH . F 4 HOH A 48 1039 82 HOH HOH . F 4 HOH A 49 1040 84 HOH HOH . F 4 HOH A 50 1041 88 HOH HOH . F 4 HOH A 51 1042 94 HOH HOH . F 4 HOH A 52 1043 95 HOH HOH . F 4 HOH A 53 1044 96 HOH HOH . F 4 HOH A 54 1045 97 HOH HOH . F 4 HOH A 55 1046 98 HOH HOH . F 4 HOH A 56 1047 99 HOH HOH . F 4 HOH A 57 1048 100 HOH HOH . F 4 HOH A 58 1049 102 HOH HOH . F 4 HOH A 59 1050 106 HOH HOH . F 4 HOH A 60 1051 107 HOH HOH . F 4 HOH A 61 1052 108 HOH HOH . F 4 HOH A 62 1053 109 HOH HOH . F 4 HOH A 63 1054 110 HOH HOH . F 4 HOH A 64 1055 111 HOH HOH . F 4 HOH A 65 1056 112 HOH HOH . F 4 HOH A 66 1057 113 HOH HOH . F 4 HOH A 67 1058 114 HOH HOH . F 4 HOH A 68 1059 115 HOH HOH . F 4 HOH A 69 1060 116 HOH HOH . F 4 HOH A 70 1061 117 HOH HOH . F 4 HOH A 71 1062 118 HOH HOH . F 4 HOH A 72 1063 119 HOH HOH . F 4 HOH A 73 1064 120 HOH HOH . F 4 HOH A 74 1065 122 HOH HOH . F 4 HOH A 75 1066 123 HOH HOH . F 4 HOH A 76 1067 124 HOH HOH . F 4 HOH A 77 1068 125 HOH HOH . F 4 HOH A 78 1069 127 HOH HOH . F 4 HOH A 79 1070 129 HOH HOH . F 4 HOH A 80 1071 131 HOH HOH . F 4 HOH A 81 1072 132 HOH HOH . F 4 HOH A 82 1073 133 HOH HOH . F 4 HOH A 83 1074 134 HOH HOH . F 4 HOH A 84 1075 136 HOH HOH . F 4 HOH A 85 1076 137 HOH HOH . F 4 HOH A 86 1077 139 HOH HOH . F 4 HOH A 87 1078 140 HOH HOH . F 4 HOH A 88 1079 142 HOH HOH . F 4 HOH A 89 1080 143 HOH HOH . F 4 HOH A 90 1081 144 HOH HOH . F 4 HOH A 91 1082 145 HOH HOH . F 4 HOH A 92 1083 146 HOH HOH . F 4 HOH A 93 1084 149 HOH HOH . F 4 HOH A 94 1085 150 HOH HOH . F 4 HOH A 95 1086 152 HOH HOH . F 4 HOH A 96 1087 154 HOH HOH . F 4 HOH A 97 1088 156 HOH HOH . F 4 HOH A 98 1089 157 HOH HOH . F 4 HOH A 99 1090 158 HOH HOH . F 4 HOH A 100 1091 160 HOH HOH . F 4 HOH A 101 1092 164 HOH HOH . F 4 HOH A 102 1093 166 HOH HOH . F 4 HOH A 103 1094 169 HOH HOH . F 4 HOH A 104 1095 172 HOH HOH . F 4 HOH A 105 1096 173 HOH HOH . F 4 HOH A 106 1097 175 HOH HOH . F 4 HOH A 107 1098 176 HOH HOH . F 4 HOH A 108 1099 179 HOH HOH . F 4 HOH A 109 1100 182 HOH HOH . F 4 HOH A 110 1101 184 HOH HOH . F 4 HOH A 111 1102 186 HOH HOH . F 4 HOH A 112 1103 188 HOH HOH . F 4 HOH A 113 1104 191 HOH HOH . F 4 HOH A 114 1105 192 HOH HOH . F 4 HOH A 115 1106 193 HOH HOH . F 4 HOH A 116 1107 194 HOH HOH . F 4 HOH A 117 1108 197 HOH HOH . F 4 HOH A 118 1109 198 HOH HOH . G 4 HOH B 1 892 8 HOH HOH . G 4 HOH B 2 893 10 HOH HOH . G 4 HOH B 3 894 11 HOH HOH . G 4 HOH B 4 895 14 HOH HOH . G 4 HOH B 5 896 15 HOH HOH . G 4 HOH B 6 897 17 HOH HOH . G 4 HOH B 7 898 18 HOH HOH . G 4 HOH B 8 899 20 HOH HOH . G 4 HOH B 9 900 23 HOH HOH . G 4 HOH B 10 901 24 HOH HOH . G 4 HOH B 11 902 25 HOH HOH . G 4 HOH B 12 903 26 HOH HOH . G 4 HOH B 13 904 27 HOH HOH . G 4 HOH B 14 905 39 HOH HOH . G 4 HOH B 15 906 40 HOH HOH . G 4 HOH B 16 907 41 HOH HOH . G 4 HOH B 17 908 43 HOH HOH . G 4 HOH B 18 909 45 HOH HOH . G 4 HOH B 19 910 46 HOH HOH . G 4 HOH B 20 911 47 HOH HOH . G 4 HOH B 21 912 48 HOH HOH . G 4 HOH B 22 913 49 HOH HOH . G 4 HOH B 23 914 52 HOH HOH . G 4 HOH B 24 915 54 HOH HOH . G 4 HOH B 25 916 56 HOH HOH . G 4 HOH B 26 917 59 HOH HOH . G 4 HOH B 27 918 62 HOH HOH . G 4 HOH B 28 919 63 HOH HOH . G 4 HOH B 29 920 67 HOH HOH . G 4 HOH B 30 921 69 HOH HOH . G 4 HOH B 31 922 73 HOH HOH . G 4 HOH B 32 923 74 HOH HOH . G 4 HOH B 33 924 79 HOH HOH . G 4 HOH B 34 925 80 HOH HOH . G 4 HOH B 35 926 83 HOH HOH . G 4 HOH B 36 927 85 HOH HOH . G 4 HOH B 37 928 86 HOH HOH . G 4 HOH B 38 929 87 HOH HOH . G 4 HOH B 39 930 89 HOH HOH . G 4 HOH B 40 931 90 HOH HOH . G 4 HOH B 41 932 91 HOH HOH . G 4 HOH B 42 933 92 HOH HOH . G 4 HOH B 43 934 93 HOH HOH . G 4 HOH B 44 935 101 HOH HOH . G 4 HOH B 45 936 103 HOH HOH . G 4 HOH B 46 937 104 HOH HOH . G 4 HOH B 47 938 105 HOH HOH . G 4 HOH B 48 939 121 HOH HOH . G 4 HOH B 49 940 126 HOH HOH . G 4 HOH B 50 941 128 HOH HOH . G 4 HOH B 51 942 130 HOH HOH . G 4 HOH B 52 943 135 HOH HOH . G 4 HOH B 53 944 141 HOH HOH . G 4 HOH B 54 945 147 HOH HOH . G 4 HOH B 55 946 148 HOH HOH . G 4 HOH B 56 947 151 HOH HOH . G 4 HOH B 57 948 153 HOH HOH . G 4 HOH B 58 949 159 HOH HOH . G 4 HOH B 59 950 161 HOH HOH . G 4 HOH B 60 951 162 HOH HOH . G 4 HOH B 61 952 163 HOH HOH . G 4 HOH B 62 953 165 HOH HOH . G 4 HOH B 63 954 167 HOH HOH . G 4 HOH B 64 955 168 HOH HOH . G 4 HOH B 65 956 170 HOH HOH . G 4 HOH B 66 957 171 HOH HOH . G 4 HOH B 67 958 174 HOH HOH . G 4 HOH B 68 959 177 HOH HOH . G 4 HOH B 69 960 178 HOH HOH . G 4 HOH B 70 961 180 HOH HOH . G 4 HOH B 71 962 183 HOH HOH . G 4 HOH B 72 963 185 HOH HOH . G 4 HOH B 73 964 187 HOH HOH . G 4 HOH B 74 965 189 HOH HOH . G 4 HOH B 75 966 190 HOH HOH . G 4 HOH B 76 967 195 HOH HOH . G 4 HOH B 77 968 196 HOH HOH . G 4 HOH B 78 969 199 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NI _atom_site.label_atom_id NI _atom_site.label_comp_id NI _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 2 _atom_site.Cartn_x 79.645 _atom_site.Cartn_y 48.846 _atom_site.Cartn_z 3.674 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 26.9 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NI _atom_site.auth_comp_id NI _atom_site.auth_seq_id 902 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 44 _model_server_stats.query_time_ms 346 _model_server_stats.encode_time_ms 12 _model_server_stats.element_count 1 #