data_1OXP # _model_server_result.job_id Br_RafS_Fz_AI7i82LCsYg _model_server_result.datetime_utc '2024-10-19 17:29:12' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1oxp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":411}' # _entry.id 1OXP # _exptl.entry_id 1OXP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 322.208 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "4'-DEOXY-4'-ACETYLYAMINO-PYRIDOXAL-5'-PHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1OXP _cell.length_a 69.5 _cell.length_b 91.55 _cell.length_c 128.36 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1OXP _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_655 -x+1,y,-z+1/2 -1 0 0 0 1 0 0 0 -1 69.5 0 64.18 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H15 N2 O8 P' _chem_comp.formula_weight 322.208 _chem_comp.id IK2 _chem_comp.mon_nstd_flag . _chem_comp.name "4'-DEOXY-4'-ACETYLYAMINO-PYRIDOXAL-5'-PHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 IK2 doub 152 n y N1 C6 IK2 sing 153 n y C2 C2A IK2 sing 154 n n C2 C3 IK2 sing 155 n y C2A H2A1 IK2 sing 156 n n C2A H2A2 IK2 sing 157 n n C2A H2A3 IK2 sing 158 n n C3 O3 IK2 sing 159 n n C3 C4 IK2 doub 160 n y O3 HO3 IK2 sing 161 n n C4 C4A IK2 sing 162 n n C4 C5 IK2 sing 163 n y C4A N4A IK2 sing 164 n n C4A H4A1 IK2 sing 165 n n C4A H4A2 IK2 sing 166 n n N4A OX IK2 sing 167 n n N4A HNA IK2 sing 168 n n OX C1' IK2 sing 169 n n C1' C2' IK2 sing 170 n n C1' "H1'1" IK2 sing 171 n n C1' "H1'2" IK2 sing 172 n n C2' O1' IK2 doub 173 n n C2' O2' IK2 sing 174 n n O2' HO2 IK2 sing 175 n n C5 C6 IK2 doub 176 n y C5 C5A IK2 sing 177 n n C6 H6 IK2 sing 178 n n C5A O4P IK2 sing 179 n n C5A H5A1 IK2 sing 180 n n C5A H5A2 IK2 sing 181 n n O4P P IK2 sing 182 n n P O1P IK2 doub 183 n n P O2P IK2 sing 184 n n P O3P IK2 sing 185 n n O2P HOP2 IK2 sing 186 n n O3P HOP3 IK2 sing 187 n n # _atom_sites.entry_id 1OXP _atom_sites.fract_transf_matrix[1][1] 0.014388 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010923 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007791 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 IK2 A 1 411 411 IK2 IK2 . C 3 HOH A 1 412 1 HOH HOH . C 3 HOH A 2 413 2 HOH HOH . C 3 HOH A 3 414 3 HOH HOH . C 3 HOH A 4 415 4 HOH HOH . C 3 HOH A 5 416 5 HOH HOH . C 3 HOH A 6 417 6 HOH HOH . C 3 HOH A 7 418 7 HOH HOH . C 3 HOH A 8 419 8 HOH HOH . C 3 HOH A 9 420 9 HOH HOH . C 3 HOH A 10 421 10 HOH HOH . C 3 HOH A 11 422 11 HOH HOH . C 3 HOH A 12 423 12 HOH HOH . C 3 HOH A 13 424 13 HOH HOH . C 3 HOH A 14 425 14 HOH HOH . C 3 HOH A 15 426 15 HOH HOH . C 3 HOH A 16 427 16 HOH HOH . C 3 HOH A 17 428 17 HOH HOH . C 3 HOH A 18 429 18 HOH HOH . C 3 HOH A 19 430 19 HOH HOH . C 3 HOH A 20 431 20 HOH HOH . C 3 HOH A 21 432 21 HOH HOH . C 3 HOH A 22 433 22 HOH HOH . C 3 HOH A 23 434 23 HOH HOH . C 3 HOH A 24 435 24 HOH HOH . C 3 HOH A 25 436 25 HOH HOH . C 3 HOH A 26 437 26 HOH HOH . C 3 HOH A 27 438 27 HOH HOH . C 3 HOH A 28 439 28 HOH HOH . C 3 HOH A 29 440 29 HOH HOH . C 3 HOH A 30 441 30 HOH HOH . C 3 HOH A 31 442 31 HOH HOH . C 3 HOH A 32 443 32 HOH HOH . C 3 HOH A 33 444 33 HOH HOH . C 3 HOH A 34 445 34 HOH HOH . C 3 HOH A 35 446 35 HOH HOH . C 3 HOH A 36 447 36 HOH HOH . C 3 HOH A 37 448 37 HOH HOH . C 3 HOH A 38 449 38 HOH HOH . C 3 HOH A 39 450 39 HOH HOH . C 3 HOH A 40 451 40 HOH HOH . C 3 HOH A 41 452 41 HOH HOH . C 3 HOH A 42 453 42 HOH HOH . C 3 HOH A 43 454 43 HOH HOH . C 3 HOH A 44 455 44 HOH HOH . C 3 HOH A 45 456 45 HOH HOH . C 3 HOH A 46 457 46 HOH HOH . C 3 HOH A 47 458 47 HOH HOH . C 3 HOH A 48 459 48 HOH HOH . C 3 HOH A 49 460 49 HOH HOH . C 3 HOH A 50 461 50 HOH HOH . C 3 HOH A 51 462 52 HOH HOH . C 3 HOH A 52 463 53 HOH HOH . C 3 HOH A 53 464 54 HOH HOH . C 3 HOH A 54 465 55 HOH HOH . C 3 HOH A 55 466 56 HOH HOH . C 3 HOH A 56 467 57 HOH HOH . C 3 HOH A 57 468 58 HOH HOH . C 3 HOH A 58 469 59 HOH HOH . C 3 HOH A 59 470 60 HOH HOH . C 3 HOH A 60 471 61 HOH HOH . C 3 HOH A 61 472 62 HOH HOH . C 3 HOH A 62 473 63 HOH HOH . C 3 HOH A 63 474 64 HOH HOH . C 3 HOH A 64 475 65 HOH HOH . C 3 HOH A 65 476 66 HOH HOH . C 3 HOH A 66 477 67 HOH HOH . C 3 HOH A 67 478 68 HOH HOH . C 3 HOH A 68 479 69 HOH HOH . C 3 HOH A 69 480 70 HOH HOH . C 3 HOH A 70 481 71 HOH HOH . C 3 HOH A 71 482 72 HOH HOH . C 3 HOH A 72 483 73 HOH HOH . C 3 HOH A 73 484 74 HOH HOH . C 3 HOH A 74 485 75 HOH HOH . C 3 HOH A 75 486 76 HOH HOH . C 3 HOH A 76 487 77 HOH HOH . C 3 HOH A 77 488 78 HOH HOH . C 3 HOH A 78 489 79 HOH HOH . C 3 HOH A 79 490 80 HOH HOH . C 3 HOH A 80 491 81 HOH HOH . C 3 HOH A 81 492 82 HOH HOH . C 3 HOH A 82 493 83 HOH HOH . C 3 HOH A 83 494 84 HOH HOH . C 3 HOH A 84 495 85 HOH HOH . C 3 HOH A 85 496 86 HOH HOH . C 3 HOH A 86 497 87 HOH HOH . C 3 HOH A 87 498 88 HOH HOH . C 3 HOH A 88 499 89 HOH HOH . C 3 HOH A 89 500 90 HOH HOH . C 3 HOH A 90 501 91 HOH HOH . C 3 HOH A 91 502 92 HOH HOH . C 3 HOH A 92 503 93 HOH HOH . C 3 HOH A 93 504 94 HOH HOH . C 3 HOH A 94 505 95 HOH HOH . C 3 HOH A 95 506 96 HOH HOH . C 3 HOH A 96 507 97 HOH HOH . C 3 HOH A 97 508 98 HOH HOH . C 3 HOH A 98 509 99 HOH HOH . C 3 HOH A 99 510 100 HOH HOH . C 3 HOH A 100 511 101 HOH HOH . C 3 HOH A 101 512 102 HOH HOH . C 3 HOH A 102 513 103 HOH HOH . C 3 HOH A 103 514 104 HOH HOH . C 3 HOH A 104 515 105 HOH HOH . C 3 HOH A 105 516 106 HOH HOH . C 3 HOH A 106 517 107 HOH HOH . C 3 HOH A 107 518 108 HOH HOH . C 3 HOH A 108 519 109 HOH HOH . C 3 HOH A 109 520 110 HOH HOH . C 3 HOH A 110 521 111 HOH HOH . C 3 HOH A 111 522 112 HOH HOH . C 3 HOH A 112 523 113 HOH HOH . C 3 HOH A 113 524 114 HOH HOH . C 3 HOH A 114 525 115 HOH HOH . C 3 HOH A 115 526 116 HOH HOH . C 3 HOH A 116 527 117 HOH HOH . C 3 HOH A 117 528 118 HOH HOH . C 3 HOH A 118 529 119 HOH HOH . C 3 HOH A 119 530 120 HOH HOH . C 3 HOH A 120 531 121 HOH HOH . C 3 HOH A 121 532 122 HOH HOH . C 3 HOH A 122 533 123 HOH HOH . C 3 HOH A 123 534 124 HOH HOH . C 3 HOH A 124 535 125 HOH HOH . C 3 HOH A 125 536 126 HOH HOH . C 3 HOH A 126 537 127 HOH HOH . C 3 HOH A 127 538 128 HOH HOH . C 3 HOH A 128 539 129 HOH HOH . C 3 HOH A 129 540 130 HOH HOH . C 3 HOH A 130 541 131 HOH HOH . C 3 HOH A 131 542 132 HOH HOH . C 3 HOH A 132 543 133 HOH HOH . C 3 HOH A 133 544 134 HOH HOH . C 3 HOH A 134 545 135 HOH HOH . C 3 HOH A 135 546 136 HOH HOH . C 3 HOH A 136 547 137 HOH HOH . C 3 HOH A 137 548 138 HOH HOH . C 3 HOH A 138 549 139 HOH HOH . C 3 HOH A 139 550 140 HOH HOH . C 3 HOH A 140 551 141 HOH HOH . C 3 HOH A 141 552 142 HOH HOH . C 3 HOH A 142 553 143 HOH HOH . C 3 HOH A 143 554 144 HOH HOH . C 3 HOH A 144 555 145 HOH HOH . C 3 HOH A 145 556 146 HOH HOH . C 3 HOH A 146 557 147 HOH HOH . C 3 HOH A 147 558 148 HOH HOH . C 3 HOH A 148 559 149 HOH HOH . C 3 HOH A 149 560 150 HOH HOH . C 3 HOH A 150 561 151 HOH HOH . C 3 HOH A 151 562 152 HOH HOH . C 3 HOH A 152 563 153 HOH HOH . C 3 HOH A 153 564 154 HOH HOH . C 3 HOH A 154 565 155 HOH HOH . C 3 HOH A 155 566 156 HOH HOH . C 3 HOH A 156 567 157 HOH HOH . C 3 HOH A 157 568 158 HOH HOH . C 3 HOH A 158 569 159 HOH HOH . C 3 HOH A 159 570 160 HOH HOH . C 3 HOH A 160 571 161 HOH HOH . C 3 HOH A 161 572 162 HOH HOH . C 3 HOH A 162 573 163 HOH HOH . C 3 HOH A 163 574 164 HOH HOH . C 3 HOH A 164 575 165 HOH HOH . C 3 HOH A 165 576 166 HOH HOH . C 3 HOH A 166 577 167 HOH HOH . C 3 HOH A 167 578 168 HOH HOH . C 3 HOH A 168 579 169 HOH HOH . C 3 HOH A 169 580 170 HOH HOH . C 3 HOH A 170 581 171 HOH HOH . C 3 HOH A 171 582 172 HOH HOH . C 3 HOH A 172 583 173 HOH HOH . C 3 HOH A 173 584 174 HOH HOH . C 3 HOH A 174 585 175 HOH HOH . C 3 HOH A 175 586 176 HOH HOH . C 3 HOH A 176 587 178 HOH HOH . C 3 HOH A 177 588 179 HOH HOH . C 3 HOH A 178 589 180 HOH HOH . C 3 HOH A 179 590 181 HOH HOH . C 3 HOH A 180 591 182 HOH HOH . C 3 HOH A 181 592 183 HOH HOH . C 3 HOH A 182 593 184 HOH HOH . C 3 HOH A 183 594 185 HOH HOH . C 3 HOH A 184 595 186 HOH HOH . C 3 HOH A 185 596 187 HOH HOH . C 3 HOH A 186 597 188 HOH HOH . C 3 HOH A 187 598 189 HOH HOH . C 3 HOH A 188 599 190 HOH HOH . C 3 HOH A 189 600 191 HOH HOH . C 3 HOH A 190 601 192 HOH HOH . C 3 HOH A 191 602 193 HOH HOH . C 3 HOH A 192 603 194 HOH HOH . C 3 HOH A 193 604 195 HOH HOH . C 3 HOH A 194 605 196 HOH HOH . C 3 HOH A 195 606 197 HOH HOH . C 3 HOH A 196 607 198 HOH HOH . C 3 HOH A 197 608 199 HOH HOH . C 3 HOH A 198 609 200 HOH HOH . C 3 HOH A 199 610 201 HOH HOH . C 3 HOH A 200 611 202 HOH HOH . C 3 HOH A 201 612 203 HOH HOH . C 3 HOH A 202 613 204 HOH HOH . C 3 HOH A 203 614 206 HOH HOH . C 3 HOH A 204 615 207 HOH HOH . C 3 HOH A 205 616 208 HOH HOH . C 3 HOH A 206 617 209 HOH HOH . C 3 HOH A 207 618 210 HOH HOH . C 3 HOH A 208 619 211 HOH HOH . C 3 HOH A 209 620 212 HOH HOH . C 3 HOH A 210 621 213 HOH HOH . C 3 HOH A 211 622 214 HOH HOH . C 3 HOH A 212 623 215 HOH HOH . C 3 HOH A 213 624 216 HOH HOH . C 3 HOH A 214 625 217 HOH HOH . C 3 HOH A 215 626 218 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 IK2 . . . B 2 43.828 15.774 45.215 1 7.97 ? N1 IK2 411 A 1 HETATM 2 C C2 IK2 . . . B 2 45.056 15.388 45.603 1 7.59 ? C2 IK2 411 A 1 HETATM 3 C C2A IK2 . . . B 2 45.682 15.834 46.887 1 7.75 ? C2A IK2 411 A 1 HETATM 4 C C3 IK2 . . . B 2 45.735 14.508 44.679 1 8.48 ? C3 IK2 411 A 1 HETATM 5 O O3 IK2 . . . B 2 46.892 14.335 45.326 1 8.48 ? O3 IK2 411 A 1 HETATM 6 C C4 IK2 . . . B 2 45.17 14.095 43.513 1 8.37 ? C4 IK2 411 A 1 HETATM 7 C C4A IK2 . . . B 2 45.661 13.203 42.395 1 9.23 ? C4A IK2 411 A 1 HETATM 8 N N4A IK2 . . . B 2 46.867 13.011 42.216 1 11.12 ? N4A IK2 411 A 1 HETATM 9 O OX IK2 . . . B 2 47.626 12.096 41.469 1 13.09 ? OX IK2 411 A 1 HETATM 10 C C1' IK2 . . . B 2 47.678 12.416 40.094 1 13.59 ? C1' IK2 411 A 1 HETATM 11 C C2' IK2 . . . B 2 48.1 13.821 39.621 1 13.47 ? C2' IK2 411 A 1 HETATM 12 O O1' IK2 . . . B 2 48.861 14.694 40.209 1 13.82 ? O1' IK2 411 A 1 HETATM 13 O O2' IK2 . . . B 2 47.483 14.305 38.582 1 14.57 ? O2' IK2 411 A 1 HETATM 14 C C5 IK2 . . . B 2 43.83 14.594 43.236 1 7.39 ? C5 IK2 411 A 1 HETATM 15 C C6 IK2 . . . B 2 43.202 15.406 44.098 1 7.5 ? C6 IK2 411 A 1 HETATM 16 C C5A IK2 . . . B 2 43.241 14.111 41.88 1 5.72 ? C5A IK2 411 A 1 HETATM 17 O O4P IK2 . . . B 2 43.26 12.743 41.586 1 2.76 ? O4P IK2 411 A 1 HETATM 18 P P IK2 . . . B 2 42.334 11.966 40.572 1 2 ? P IK2 411 A 1 HETATM 19 O O1P IK2 . . . B 2 43.188 10.981 39.891 1 2 ? O1P IK2 411 A 1 HETATM 20 O O2P IK2 . . . B 2 41.835 13.042 39.6 1 2 ? O2P IK2 411 A 1 HETATM 21 O O3P IK2 . . . B 2 41.179 11.414 41.235 1 2 ? O3P IK2 411 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 282 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 21 #