data_1OY8 # _model_server_result.job_id ht7lcubWpbQQFAfflzTdFw _model_server_result.datetime_utc '2024-11-21 13:58:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1oy8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":2001}' # _entry.id 1OY8 # _exptl.entry_id 1OY8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 443.557 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'RHODAMINE 6G' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1OY8 _cell.length_a 144.8 _cell.length_b 144.8 _cell.length_c 518.614 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1OY8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'H 3 2' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_665 -y+1,x-y+1,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 72.4 125.400478 0 3 'crystal symmetry operation' 3_565 -x+y,-x+1,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 -72.4 125.400478 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C28 H31 N2 O3 1' _chem_comp.formula_weight 443.557 _chem_comp.id RHQ _chem_comp.mon_nstd_flag . _chem_comp.name 'RHODAMINE 6G' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 RHQ sing 275 n y C1 C6 RHQ doub 276 n y C1 O1 RHQ sing 277 n y C2 C3 RHQ sing 278 n y C2 C9 RHQ doub 279 n y C3 C4 RHQ doub 280 n y C3 H31 RHQ sing 281 n n C4 C5 RHQ sing 282 n y C4 C21 RHQ sing 283 n n C5 C6 RHQ sing 284 n y C5 N2 RHQ doub 285 z n C6 H61 RHQ sing 286 n n O1 C7 RHQ sing 287 n y C7 C8 RHQ doub 288 n y C7 C10 RHQ sing 289 n y C8 C9 RHQ sing 290 n y C8 C13 RHQ sing 291 n y C9 C14 RHQ sing 292 n y C10 C11 RHQ doub 293 n y C10 H101 RHQ sing 294 n n C11 C12 RHQ sing 295 n y C11 N1 RHQ sing 296 n n C12 C13 RHQ doub 297 n y C12 C20 RHQ sing 298 n n C13 H131 RHQ sing 299 n n N1 C22 RHQ sing 300 n n N1 HN11 RHQ sing 301 n n C14 C15 RHQ doub 302 n y C14 C19 RHQ sing 303 n y C15 C16 RHQ sing 304 n y C15 H151 RHQ sing 305 n n C16 C17 RHQ doub 306 n y C16 H161 RHQ sing 307 n n C17 C18 RHQ sing 308 n y C17 H171 RHQ sing 309 n n C18 C19 RHQ doub 310 n y C18 H181 RHQ sing 311 n n C19 C26 RHQ sing 312 n n C20 H201 RHQ sing 313 n n C20 H202 RHQ sing 314 n n C20 H203 RHQ sing 315 n n C21 H211 RHQ sing 316 n n C21 H212 RHQ sing 317 n n C21 H213 RHQ sing 318 n n C22 C23 RHQ sing 319 n n C22 H221 RHQ sing 320 n n C22 H222 RHQ sing 321 n n C23 H231 RHQ sing 322 n n C23 H232 RHQ sing 323 n n C23 H233 RHQ sing 324 n n N2 C24 RHQ sing 325 n n N2 HN21 RHQ sing 326 n n C24 C25 RHQ sing 327 n n C24 H241 RHQ sing 328 n n C24 H242 RHQ sing 329 n n C25 H251 RHQ sing 330 n n C25 H252 RHQ sing 331 n n C25 H253 RHQ sing 332 n n C26 O27 RHQ doub 333 n n C26 O2 RHQ sing 334 n n O2 C28 RHQ sing 335 n n C28 C29 RHQ sing 336 n n C28 H281 RHQ sing 337 n n C28 H282 RHQ sing 338 n n C29 H291 RHQ sing 339 n n C29 H292 RHQ sing 340 n n C29 H293 RHQ sing 341 n n # _atom_sites.entry_id 1OY8 _atom_sites.fract_transf_matrix[1][1] 0.006906 _atom_sites.fract_transf_matrix[1][2] 0.003987 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007974 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.001928 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id B _pdbx_nonpoly_scheme.entity_id 2 _pdbx_nonpoly_scheme.mon_id RHQ _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 2001 _pdbx_nonpoly_scheme.auth_seq_num 2001 _pdbx_nonpoly_scheme.pdb_mon_id RHQ _pdbx_nonpoly_scheme.auth_mon_id RHQ _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 RHQ . . . B 2 -4.237 76.269 205.968 1 197.88 ? C1 RHQ 2001 A 1 HETATM 2 C C2 RHQ . . . B 2 -4.313 76.777 207.367 1 197.03 ? C2 RHQ 2001 A 1 HETATM 3 C C3 RHQ . . . B 2 -5.376 77.591 207.753 1 193.57 ? C3 RHQ 2001 A 1 HETATM 4 C C4 RHQ . . . B 2 -6.375 77.937 206.844 1 192.92 ? C4 RHQ 2001 A 1 HETATM 5 C C5 RHQ . . . B 2 -6.305 77.429 205.429 1 189.25 ? C5 RHQ 2001 A 1 HETATM 6 C C6 RHQ . . . B 2 -5.233 76.614 205.058 1 193.56 ? C6 RHQ 2001 A 1 HETATM 7 O O1 RHQ . . . B 2 -3.196 75.463 205.562 1 204.03 ? O1 RHQ 2001 A 1 HETATM 8 C C7 RHQ . . . B 2 -2.171 75.073 206.396 1 205.43 ? C7 RHQ 2001 A 1 HETATM 9 C C8 RHQ . . . B 2 -2.13 75.513 207.82 1 204.1 ? C8 RHQ 2001 A 1 HETATM 10 C C9 RHQ . . . B 2 -3.233 76.392 208.335 1 201.55 ? C9 RHQ 2001 A 1 HETATM 11 C C10 RHQ . . . B 2 -1.157 74.255 205.9 1 202.24 ? C10 RHQ 2001 A 1 HETATM 12 C C11 RHQ . . . B 2 -0.1 73.838 206.71 1 198.83 ? C11 RHQ 2001 A 1 HETATM 13 C C12 RHQ . . . B 2 -0.066 74.286 208.147 1 195.33 ? C12 RHQ 2001 A 1 HETATM 14 C C13 RHQ . . . B 2 -1.082 75.104 208.641 1 200.13 ? C13 RHQ 2001 A 1 HETATM 15 N N1 RHQ . . . B 2 0.831 73.039 206.118 1 196.9 ? N1 RHQ 2001 A 1 HETATM 16 C C14 RHQ . . . B 2 -3.256 76.878 209.76 1 205.15 ? C14 RHQ 2001 A 1 HETATM 17 C C15 RHQ . . . B 2 -2.5 77.999 210.102 1 207.85 ? C15 RHQ 2001 A 1 HETATM 18 C C16 RHQ . . . B 2 -2.5 78.475 211.414 1 208.19 ? C16 RHQ 2001 A 1 HETATM 19 C C17 RHQ . . . B 2 -3.254 77.847 212.406 1 210.14 ? C17 RHQ 2001 A 1 HETATM 20 C C18 RHQ . . . B 2 -4.029 76.723 212.116 1 209.27 ? C18 RHQ 2001 A 1 HETATM 21 C C19 RHQ . . . B 2 -4.066 76.204 210.822 1 203.38 ? C19 RHQ 2001 A 1 HETATM 22 C C20 RHQ . . . B 2 1.028 73.892 209.108 1 189.35 ? C20 RHQ 2001 A 1 HETATM 23 C C21 RHQ . . . B 2 -7.486 78.822 207.352 1 186.41 ? C21 RHQ 2001 A 1 HETATM 24 C C22 RHQ . . . B 2 2.201 72.825 206.607 1 186.92 ? C22 RHQ 2001 A 1 HETATM 25 C C23 RHQ . . . B 2 3.222 72.923 205.48 1 176.49 ? C23 RHQ 2001 A 1 HETATM 26 N N2 RHQ . . . B 2 -7.214 77.696 204.451 1 175.54 ? N2 RHQ 2001 A 1 HETATM 27 C C24 RHQ . . . B 2 -8.408 78.512 204.585 1 169.84 ? C24 RHQ 2001 A 1 HETATM 28 C C25 RHQ . . . B 2 -9.078 78.762 203.251 1 171.43 ? C25 RHQ 2001 A 1 HETATM 29 C C26 RHQ . . . B 2 -4.914 74.991 210.548 1 195.78 ? C26 RHQ 2001 A 1 HETATM 30 O O27 RHQ . . . B 2 -5.599 74.906 209.541 1 193.1 ? O27 RHQ 2001 A 1 HETATM 31 O O2 RHQ . . . B 2 -4.94 73.89 211.5 1 185.83 ? O2 RHQ 2001 A 1 HETATM 32 C C28 RHQ . . . B 2 -6.061 73.72 212.37 1 180.47 ? C28 RHQ 2001 A 1 HETATM 33 C C29 RHQ . . . B 2 -6.423 72.253 212.454 1 180.1 ? C29 RHQ 2001 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 4 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 239 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 33 #