data_1OY9 # _model_server_result.job_id iEIXS0llpgQTHrgBo7f4aw _model_server_result.datetime_utc '2024-11-24 03:32:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1oy9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":3001}' # _entry.id 1OY9 # _exptl.entry_id 1OY9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 314.404 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description ETHIDIUM _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1OY9 _cell.length_a 144.676 _cell.length_b 144.676 _cell.length_c 517.512 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1OY9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'H 3 2' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -y,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 0 0 0 3 'crystal symmetry operation' 3_555 -x+y,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H20 N3 1' _chem_comp.formula_weight 314.404 _chem_comp.id ET _chem_comp.mon_nstd_flag . _chem_comp.name ETHIDIUM _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 ET doub 83 n y C1 C13 ET sing 84 n y C1 H1 ET sing 85 n n C2 C3 ET sing 86 n y C2 H2 ET sing 87 n n C3 C4 ET doub 88 n y C3 N23 ET sing 89 n n C4 C14 ET sing 90 n y C4 H4 ET sing 91 n n N5 C6 ET doub 92 n y N5 C14 ET sing 93 n y N5 C21 ET sing 94 n n C6 C11 ET sing 95 n y C6 C15 ET sing 96 n y C7 C8 ET doub 97 n y C7 C11 ET sing 98 n y C7 H7 ET sing 99 n n C8 C9 ET sing 100 n y C8 N24 ET sing 101 n n C9 C10 ET doub 102 n y C9 H9 ET sing 103 n n C10 C12 ET sing 104 n y C10 H10 ET sing 105 n n C11 C12 ET doub 106 n y C12 C13 ET sing 107 n y C13 C14 ET doub 108 n y C15 C16 ET doub 109 n y C15 C20 ET sing 110 n y C16 C17 ET sing 111 n y C16 H16 ET sing 112 n n C17 C18 ET doub 113 n y C17 H17 ET sing 114 n n C18 C19 ET sing 115 n y C18 H18 ET sing 116 n n C19 C20 ET doub 117 n y C19 H19 ET sing 118 n n C20 H20 ET sing 119 n n C21 C22 ET sing 120 n n C21 H211 ET sing 121 n n C21 H212 ET sing 122 n n C22 H221 ET sing 123 n n C22 H222 ET sing 124 n n C22 H223 ET sing 125 n n N23 H231 ET sing 126 n n N23 H232 ET sing 127 n n N24 H241 ET sing 128 n n N24 H242 ET sing 129 n n # _atom_sites.entry_id 1OY9 _atom_sites.fract_transf_matrix[1][1] 0.006912 _atom_sites.fract_transf_matrix[1][2] 0.003991 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007981 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.001932 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id B _pdbx_nonpoly_scheme.entity_id 2 _pdbx_nonpoly_scheme.mon_id ET _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 3001 _pdbx_nonpoly_scheme.auth_seq_num 3001 _pdbx_nonpoly_scheme.pdb_mon_id ET _pdbx_nonpoly_scheme.auth_mon_id ET _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 ET . . . B 2 2.643 5.087 131.403 1 219.98 ? C1 ET 3001 A 1 HETATM 2 C C2 ET . . . B 2 3.606 5.439 130.451 1 214.53 ? C2 ET 3001 A 1 HETATM 3 C C3 ET . . . B 2 3.238 5.765 129.103 1 216.3 ? C3 ET 3001 A 1 HETATM 4 C C4 ET . . . B 2 1.843 5.743 128.735 1 216.48 ? C4 ET 3001 A 1 HETATM 5 N N5 ET . . . B 2 -0.619 5.313 129.353 1 219.48 ? N5 ET 3001 A 1 HETATM 6 C C6 ET . . . B 2 -1.734 4.9 130.411 1 221.87 ? C6 ET 3001 A 1 HETATM 7 C C7 ET . . . B 2 -2.275 4.227 132.676 1 229.18 ? C7 ET 3001 A 1 HETATM 8 C C8 ET . . . B 2 -1.971 3.897 134.014 1 226.22 ? C8 ET 3001 A 1 HETATM 9 C C9 ET . . . B 2 -0.602 3.964 134.373 1 228.83 ? C9 ET 3001 A 1 HETATM 10 C C10 ET . . . B 2 0.423 4.296 133.459 1 221.92 ? C10 ET 3001 A 1 HETATM 11 C C11 ET . . . B 2 -1.256 4.603 131.671 1 226.14 ? C11 ET 3001 A 1 HETATM 12 C C12 ET . . . B 2 0.161 4.651 132.08 1 225.45 ? C12 ET 3001 A 1 HETATM 13 C C13 ET . . . B 2 1.194 5.014 131.067 1 225.2 ? C13 ET 3001 A 1 HETATM 14 C C14 ET . . . B 2 0.779 5.365 129.726 1 223.25 ? C14 ET 3001 A 1 HETATM 15 C C15 ET . . . B 2 -3.245 4.816 130.002 1 219.03 ? C15 ET 3001 A 1 HETATM 16 C C16 ET . . . B 2 -4.122 6.01 130.041 1 213.07 ? C16 ET 3001 A 1 HETATM 17 C C17 ET . . . B 2 -5.508 5.964 129.714 1 211.15 ? C17 ET 3001 A 1 HETATM 18 C C18 ET . . . B 2 -6.14 4.762 129.331 1 209.48 ? C18 ET 3001 A 1 HETATM 19 C C19 ET . . . B 2 -5.365 3.569 129.278 1 210.69 ? C19 ET 3001 A 1 HETATM 20 C C20 ET . . . B 2 -3.972 3.593 129.598 1 215.59 ? C20 ET 3001 A 1 HETATM 21 C C21 ET . . . B 2 -1.15 5.654 127.999 1 205 ? C21 ET 3001 A 1 HETATM 22 C C22 ET . . . B 2 -1.636 7.122 127.918 1 194.92 ? C22 ET 3001 A 1 HETATM 23 N N23 ET . . . B 2 4.234 6.125 128.21 1 209.33 ? N23 ET 3001 A 1 HETATM 24 N N24 ET . . . B 2 -2.969 3.529 134.961 1 213.71 ? N24 ET 3001 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 316 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 24 #