data_1OYB # _model_server_result.job_id XsMUKVqJFF4Dxi-Ngx8emQ _model_server_result.datetime_utc '2024-11-08 04:37:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1oyb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 1OYB # _exptl.entry_id 1OYB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 456.344 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN MONONUCLEOTIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1OYB _cell.length_a 142.88 _cell.length_b 142.88 _cell.length_c 43.01 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1OYB _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_556 y,x,-z+1 0 1 0 1 0 0 0 0 -1 0 0 43.01 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C17 H21 N4 O9 P' _chem_comp.formula_weight 456.344 _chem_comp.id FMN _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN MONONUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'RIBOFLAVIN MONOPHOSPHATE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 FMN sing 70 n n N1 C10 FMN doub 71 n n C2 O2 FMN doub 72 n n C2 N3 FMN sing 73 n n N3 C4 FMN sing 74 n n N3 HN3 FMN sing 75 n n C4 O4 FMN doub 76 n n C4 C4A FMN sing 77 n n C4A N5 FMN doub 78 n n C4A C10 FMN sing 79 n n N5 C5A FMN sing 80 n n C5A C6 FMN doub 81 n y C5A C9A FMN sing 82 n y C6 C7 FMN sing 83 n y C6 H6 FMN sing 84 n n C7 C7M FMN sing 85 n n C7 C8 FMN doub 86 n y C7M HM71 FMN sing 87 n n C7M HM72 FMN sing 88 n n C7M HM73 FMN sing 89 n n C8 C8M FMN sing 90 n n C8 C9 FMN sing 91 n y C8M HM81 FMN sing 92 n n C8M HM82 FMN sing 93 n n C8M HM83 FMN sing 94 n n C9 C9A FMN doub 95 n y C9 H9 FMN sing 96 n n C9A N10 FMN sing 97 n n N10 C10 FMN sing 98 n n N10 C1' FMN sing 99 n n C1' C2' FMN sing 100 n n C1' "H1'1" FMN sing 101 n n C1' "H1'2" FMN sing 102 n n C2' O2' FMN sing 103 n n C2' C3' FMN sing 104 n n C2' H2' FMN sing 105 n n O2' HO2' FMN sing 106 n n C3' O3' FMN sing 107 n n C3' C4' FMN sing 108 n n C3' H3' FMN sing 109 n n O3' HO3' FMN sing 110 n n C4' O4' FMN sing 111 n n C4' C5' FMN sing 112 n n C4' H4' FMN sing 113 n n O4' HO4' FMN sing 114 n n C5' O5' FMN sing 115 n n C5' "H5'1" FMN sing 116 n n C5' "H5'2" FMN sing 117 n n O5' P FMN sing 118 n n P O1P FMN doub 119 n n P O2P FMN sing 120 n n P O3P FMN sing 121 n n O2P HOP2 FMN sing 122 n n O3P HOP3 FMN sing 123 n n # _atom_sites.entry_id 1OYB _atom_sites.fract_transf_matrix[1][1] 0.006999 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006999 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.02325 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FMN A 1 401 401 FMN FMN . C 3 HBA A 1 402 402 HBA HBA . D 4 HOH A 1 501 501 HOH HOH . D 4 HOH A 2 502 502 HOH HOH . D 4 HOH A 3 504 504 HOH HOH . D 4 HOH A 4 505 505 HOH HOH . D 4 HOH A 5 506 506 HOH HOH . D 4 HOH A 6 507 507 HOH HOH . D 4 HOH A 7 508 508 HOH HOH . D 4 HOH A 8 509 509 HOH HOH . D 4 HOH A 9 510 510 HOH HOH . D 4 HOH A 10 511 511 HOH HOH . D 4 HOH A 11 512 512 HOH HOH . D 4 HOH A 12 514 514 HOH HOH . D 4 HOH A 13 515 515 HOH HOH . D 4 HOH A 14 516 516 HOH HOH . D 4 HOH A 15 518 518 HOH HOH . D 4 HOH A 16 519 519 HOH HOH . D 4 HOH A 17 520 520 HOH HOH . D 4 HOH A 18 522 522 HOH HOH . D 4 HOH A 19 523 523 HOH HOH . D 4 HOH A 20 524 524 HOH HOH . D 4 HOH A 21 525 525 HOH HOH . D 4 HOH A 22 526 526 HOH HOH . D 4 HOH A 23 527 527 HOH HOH . D 4 HOH A 24 531 531 HOH HOH . D 4 HOH A 25 533 533 HOH HOH . D 4 HOH A 26 534 534 HOH HOH . D 4 HOH A 27 535 535 HOH HOH . D 4 HOH A 28 536 536 HOH HOH . D 4 HOH A 29 537 537 HOH HOH . D 4 HOH A 30 538 538 HOH HOH . D 4 HOH A 31 539 539 HOH HOH . D 4 HOH A 32 540 540 HOH HOH . D 4 HOH A 33 541 541 HOH HOH . D 4 HOH A 34 542 542 HOH HOH . D 4 HOH A 35 543 543 HOH HOH . D 4 HOH A 36 544 544 HOH HOH . D 4 HOH A 37 545 545 HOH HOH . D 4 HOH A 38 546 546 HOH HOH . D 4 HOH A 39 547 547 HOH HOH . D 4 HOH A 40 548 548 HOH HOH . D 4 HOH A 41 549 549 HOH HOH . D 4 HOH A 42 550 550 HOH HOH . D 4 HOH A 43 551 551 HOH HOH . D 4 HOH A 44 552 552 HOH HOH . D 4 HOH A 45 553 553 HOH HOH . D 4 HOH A 46 554 554 HOH HOH . D 4 HOH A 47 555 555 HOH HOH . D 4 HOH A 48 556 556 HOH HOH . D 4 HOH A 49 557 557 HOH HOH . D 4 HOH A 50 558 558 HOH HOH . D 4 HOH A 51 559 559 HOH HOH . D 4 HOH A 52 560 560 HOH HOH . D 4 HOH A 53 562 562 HOH HOH . D 4 HOH A 54 563 563 HOH HOH . D 4 HOH A 55 564 564 HOH HOH . D 4 HOH A 56 565 565 HOH HOH . D 4 HOH A 57 566 566 HOH HOH . D 4 HOH A 58 568 568 HOH HOH . D 4 HOH A 59 569 569 HOH HOH . D 4 HOH A 60 570 570 HOH HOH . D 4 HOH A 61 571 571 HOH HOH . D 4 HOH A 62 573 573 HOH HOH . D 4 HOH A 63 574 574 HOH HOH . D 4 HOH A 64 575 575 HOH HOH . D 4 HOH A 65 577 577 HOH HOH . D 4 HOH A 66 578 578 HOH HOH . D 4 HOH A 67 580 580 HOH HOH . D 4 HOH A 68 581 581 HOH HOH . D 4 HOH A 69 583 583 HOH HOH . D 4 HOH A 70 584 584 HOH HOH . D 4 HOH A 71 585 585 HOH HOH . D 4 HOH A 72 586 586 HOH HOH . D 4 HOH A 73 587 587 HOH HOH . D 4 HOH A 74 588 588 HOH HOH . D 4 HOH A 75 589 589 HOH HOH . D 4 HOH A 76 590 590 HOH HOH . D 4 HOH A 77 591 591 HOH HOH . D 4 HOH A 78 592 592 HOH HOH . D 4 HOH A 79 600 600 HOH HOH . D 4 HOH A 80 603 603 HOH HOH . D 4 HOH A 81 604 604 HOH HOH . D 4 HOH A 82 605 605 HOH HOH . D 4 HOH A 83 606 606 HOH HOH . D 4 HOH A 84 607 607 HOH HOH . D 4 HOH A 85 608 608 HOH HOH . D 4 HOH A 86 609 609 HOH HOH . D 4 HOH A 87 611 611 HOH HOH . D 4 HOH A 88 612 612 HOH HOH . D 4 HOH A 89 613 613 HOH HOH . D 4 HOH A 90 614 614 HOH HOH . D 4 HOH A 91 615 615 HOH HOH . D 4 HOH A 92 616 616 HOH HOH . D 4 HOH A 93 619 619 HOH HOH . D 4 HOH A 94 621 621 HOH HOH . D 4 HOH A 95 622 622 HOH HOH . D 4 HOH A 96 623 623 HOH HOH . D 4 HOH A 97 624 624 HOH HOH . D 4 HOH A 98 627 627 HOH HOH . D 4 HOH A 99 628 628 HOH HOH . D 4 HOH A 100 630 630 HOH HOH . D 4 HOH A 101 631 631 HOH HOH . D 4 HOH A 102 632 632 HOH HOH . D 4 HOH A 103 633 633 HOH HOH . D 4 HOH A 104 634 634 HOH HOH . D 4 HOH A 105 635 635 HOH HOH . D 4 HOH A 106 637 637 HOH HOH . D 4 HOH A 107 638 638 HOH HOH . D 4 HOH A 108 639 639 HOH HOH . D 4 HOH A 109 640 640 HOH HOH . D 4 HOH A 110 641 641 HOH HOH . D 4 HOH A 111 643 643 HOH HOH . D 4 HOH A 112 644 644 HOH HOH . D 4 HOH A 113 645 645 HOH HOH . D 4 HOH A 114 646 646 HOH HOH . D 4 HOH A 115 647 647 HOH HOH . D 4 HOH A 116 648 648 HOH HOH . D 4 HOH A 117 649 649 HOH HOH . D 4 HOH A 118 650 650 HOH HOH . D 4 HOH A 119 651 651 HOH HOH . D 4 HOH A 120 652 652 HOH HOH . D 4 HOH A 121 654 654 HOH HOH . D 4 HOH A 122 655 655 HOH HOH . D 4 HOH A 123 656 656 HOH HOH . D 4 HOH A 124 657 657 HOH HOH . D 4 HOH A 125 659 659 HOH HOH . D 4 HOH A 126 660 660 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 FMN . . . B 2 35.196 67.845 22.262 1 7.64 ? N1 FMN 401 A 1 HETATM 2 C C2 FMN . . . B 2 35.897 68.565 23.115 1 8.46 ? C2 FMN 401 A 1 HETATM 3 O O2 FMN . . . B 2 36.912 68.097 23.589 1 10.2 ? O2 FMN 401 A 1 HETATM 4 N N3 FMN . . . B 2 35.519 69.87 23.432 1 11.6 ? N3 FMN 401 A 1 HETATM 5 C C4 FMN . . . B 2 34.294 70.427 23.036 1 10.78 ? C4 FMN 401 A 1 HETATM 6 O O4 FMN . . . B 2 33.913 71.506 23.54 1 11.38 ? O4 FMN 401 A 1 HETATM 7 C C4A FMN . . . B 2 33.555 69.676 22.028 1 10.78 ? C4A FMN 401 A 1 HETATM 8 N N5 FMN . . . B 2 32.395 70.137 21.502 1 9.5 ? N5 FMN 401 A 1 HETATM 9 C C5A FMN . . . B 2 31.696 69.394 20.641 1 7.44 ? C5A FMN 401 A 1 HETATM 10 C C6 FMN . . . B 2 30.489 69.938 20.162 1 7.21 ? C6 FMN 401 A 1 HETATM 11 C C7 FMN . . . B 2 29.693 69.133 19.344 1 12.01 ? C7 FMN 401 A 1 HETATM 12 C C7M FMN . . . B 2 28.368 69.649 18.885 1 8.58 ? C7M FMN 401 A 1 HETATM 13 C C8 FMN . . . B 2 30.158 67.809 18.949 1 10.66 ? C8 FMN 401 A 1 HETATM 14 C C8M FMN . . . B 2 29.385 66.917 18.032 1 9.43 ? C8M FMN 401 A 1 HETATM 15 C C9 FMN . . . B 2 31.337 67.292 19.455 1 8.61 ? C9 FMN 401 A 1 HETATM 16 C C9A FMN . . . B 2 32.126 68.079 20.302 1 9.13 ? C9A FMN 401 A 1 HETATM 17 N N10 FMN . . . B 2 33.318 67.599 20.819 1 10.75 ? N10 FMN 401 A 1 HETATM 18 C C10 FMN . . . B 2 34.074 68.37 21.663 1 11.14 ? C10 FMN 401 A 1 HETATM 19 C C1' FMN . . . B 2 33.751 66.193 20.545 1 10.23 ? C1' FMN 401 A 1 HETATM 20 C C2' FMN . . . B 2 32.957 65.195 21.439 1 10.54 ? C2' FMN 401 A 1 HETATM 21 O O2' FMN . . . B 2 33.279 65.413 22.828 1 8.91 ? O2' FMN 401 A 1 HETATM 22 C C3' FMN . . . B 2 33.171 63.729 21.104 1 10.26 ? C3' FMN 401 A 1 HETATM 23 O O3' FMN . . . B 2 34.545 63.313 21.321 1 9.29 ? O3' FMN 401 A 1 HETATM 24 C C4' FMN . . . B 2 32.755 63.374 19.696 1 10.57 ? C4' FMN 401 A 1 HETATM 25 O O4' FMN . . . B 2 31.486 63.919 19.498 1 14.51 ? O4' FMN 401 A 1 HETATM 26 C C5' FMN . . . B 2 32.706 61.863 19.518 1 10.06 ? C5' FMN 401 A 1 HETATM 27 O O5' FMN . . . B 2 31.668 61.294 20.426 1 8.99 ? O5' FMN 401 A 1 HETATM 28 P P FMN . . . B 2 30.31 60.901 19.844 1 15.58 ? P FMN 401 A 1 HETATM 29 O O1P FMN . . . B 2 30.467 60.006 18.715 1 11.46 ? O1P FMN 401 A 1 HETATM 30 O O2P FMN . . . B 2 29.52 62.114 19.697 1 14.45 ? O2P FMN 401 A 1 HETATM 31 O O3P FMN . . . B 2 29.7 60.151 21.011 1 11.85 ? O3P FMN 401 A 1 HETATM 32 H HN3 FMN . . . B 2 36.197 70.484 23.825 1 0 ? HN3 FMN 401 A 1 HETATM 33 H HO2' FMN . . . B 2 33.063 66.333 23.022 1 0 ? HO2' FMN 401 A 1 HETATM 34 H HO3' FMN . . . B 2 34.532 62.354 21.327 1 0 ? HO3' FMN 401 A 1 HETATM 35 H HO4' FMN . . . B 2 30.85 63.205 19.641 1 0 ? HO4' FMN 401 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 326 _model_server_stats.encode_time_ms 12 _model_server_stats.element_count 35 #