data_1OYD # _model_server_result.job_id 1OqsgUKDgH2g_qsPSe0lNA _model_server_result.datetime_utc '2025-06-28 20:59:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1oyd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":4001}' # _entry.id 1OYD # _exptl.entry_id 1OYD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 456.665 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description DEQUALINIUM _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1OYD _cell.length_a 144.767 _cell.length_b 144.767 _cell.length_c 517.891 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1OYD _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'H 3 2' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_665 -y+1,x-y+1,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 72.3835 125.3719 0 3 'crystal symmetry operation' 3_565 -x+y,-x+1,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 -72.3835 125.3719 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C30 H40 N4 2' _chem_comp.formula_weight 456.665 _chem_comp.id DEQ _chem_comp.mon_nstd_flag . _chem_comp.name DEQUALINIUM _chem_comp.type non-polymer _chem_comp.pdbx_synonyms DEQUADIN # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 DEQ doub 83 n y C1 C5 DEQ sing 84 n y C1 H11 DEQ sing 85 n n C2 C3 DEQ sing 86 n y C2 H21 DEQ sing 87 n n C3 C4 DEQ doub 88 n y C3 H31 DEQ sing 89 n n C4 C6 DEQ sing 90 n y C4 H41 DEQ sing 91 n n C5 C6 DEQ doub 92 n y C5 N1 DEQ sing 93 n y C6 C7 DEQ sing 94 n y C7 C8 DEQ doub 95 n y C7 N4 DEQ sing 96 n n C8 C9 DEQ sing 97 n y C8 H81 DEQ sing 98 n n C9 N1 DEQ doub 99 n y C9 C30 DEQ sing 100 n n N1 C28 DEQ sing 101 n n C10 C11 DEQ doub 102 n y C10 C14 DEQ sing 103 n y C10 C15 DEQ sing 104 n y C11 N2 DEQ sing 105 n y C11 C18 DEQ sing 106 n y N2 C12 DEQ doub 107 n y N2 C19 DEQ sing 108 n n C12 C13 DEQ sing 109 n y C12 C29 DEQ sing 110 n n C13 C14 DEQ doub 111 n y C13 H131 DEQ sing 112 n n C14 N3 DEQ sing 113 n n C15 C16 DEQ doub 114 n y C15 H151 DEQ sing 115 n n C16 C17 DEQ sing 116 n y C16 H161 DEQ sing 117 n n C17 C18 DEQ doub 118 n y C17 H171 DEQ sing 119 n n C18 H181 DEQ sing 120 n n C19 C20 DEQ sing 121 n n C19 H191 DEQ sing 122 n n C19 H192 DEQ sing 123 n n C20 C21 DEQ sing 124 n n C20 H201 DEQ sing 125 n n C20 H202 DEQ sing 126 n n C21 C22 DEQ sing 127 n n C21 H211 DEQ sing 128 n n C21 H212 DEQ sing 129 n n C22 C23 DEQ sing 130 n n C22 H221 DEQ sing 131 n n C22 H222 DEQ sing 132 n n C23 C24 DEQ sing 133 n n C23 H231 DEQ sing 134 n n C23 H232 DEQ sing 135 n n C24 C25 DEQ sing 136 n n C24 H241 DEQ sing 137 n n C24 H242 DEQ sing 138 n n C25 C26 DEQ sing 139 n n C25 H251 DEQ sing 140 n n C25 H252 DEQ sing 141 n n C26 C27 DEQ sing 142 n n C26 H261 DEQ sing 143 n n C26 H262 DEQ sing 144 n n C27 C28 DEQ sing 145 n n C27 H271 DEQ sing 146 n n C27 H272 DEQ sing 147 n n C28 H281 DEQ sing 148 n n C28 H282 DEQ sing 149 n n C30 H301 DEQ sing 150 n n C30 H302 DEQ sing 151 n n C30 H303 DEQ sing 152 n n C29 H291 DEQ sing 153 n n C29 H292 DEQ sing 154 n n C29 H293 DEQ sing 155 n n N4 HN41 DEQ sing 156 n n N4 HN42 DEQ sing 157 n n N3 HN31 DEQ sing 158 n n N3 HN32 DEQ sing 159 n n # _atom_sites.entry_id 1OYD _atom_sites.fract_transf_matrix[1][1] 0.006908 _atom_sites.fract_transf_matrix[1][2] 0.003988 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007976 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.001931 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id B _pdbx_nonpoly_scheme.entity_id 2 _pdbx_nonpoly_scheme.mon_id DEQ _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 4001 _pdbx_nonpoly_scheme.auth_seq_num 4001 _pdbx_nonpoly_scheme.pdb_mon_id DEQ _pdbx_nonpoly_scheme.auth_mon_id DEQ _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 DEQ . . . B 2 -2.167 90.024 214.011 1 223.11 ? C1 DEQ 4001 A 1 HETATM 2 C C2 DEQ . . . B 2 -0.871 90.524 213.726 1 210.24 ? C2 DEQ 4001 A 1 HETATM 3 C C3 DEQ . . . B 2 0.136 90.454 214.711 1 211.86 ? C3 DEQ 4001 A 1 HETATM 4 C C4 DEQ . . . B 2 -0.151 89.872 215.965 1 253.39 ? C4 DEQ 4001 A 1 HETATM 5 C C5 DEQ . . . B 2 -2.505 89.419 215.271 1 237.04 ? C5 DEQ 4001 A 1 HETATM 6 C C6 DEQ . . . B 2 -1.453 89.358 216.273 1 221.2 ? C6 DEQ 4001 A 1 HETATM 7 C C7 DEQ . . . B 2 -1.711 88.771 217.551 1 219.47 ? C7 DEQ 4001 A 1 HETATM 8 C C8 DEQ . . . B 2 -2.989 88.261 217.853 1 213.89 ? C8 DEQ 4001 A 1 HETATM 9 C C9 DEQ . . . B 2 -4.077 88.276 216.971 1 216.21 ? C9 DEQ 4001 A 1 HETATM 10 N N1 DEQ . . . B 2 -3.906 88.871 215.645 1 315.83 ? N1 DEQ 4001 A 1 HETATM 11 C C10 DEQ . . . B 2 2.42 86.164 207.716 1 213.62 ? C10 DEQ 4001 A 1 HETATM 12 C C11 DEQ . . . B 2 0.976 85.94 207.631 1 230.95 ? C11 DEQ 4001 A 1 HETATM 13 N N2 DEQ . . . B 2 0.302 85.731 206.217 1 302.18 ? N2 DEQ 4001 A 1 HETATM 14 C C12 DEQ . . . B 2 1.339 85.742 205.094 1 325.58 ? C12 DEQ 4001 A 1 HETATM 15 C C13 DEQ . . . B 2 2.69 85.964 205.307 1 241.55 ? C13 DEQ 4001 A 1 HETATM 16 C C14 DEQ . . . B 2 3.245 86.167 206.551 1 219.84 ? C14 DEQ 4001 A 1 HETATM 17 C C15 DEQ . . . B 2 3.031 86.357 208.994 1 199.46 ? C15 DEQ 4001 A 1 HETATM 18 C C16 DEQ . . . B 2 2.289 86.355 210.196 1 185.19 ? C16 DEQ 4001 A 1 HETATM 19 C C17 DEQ . . . B 2 0.902 86.147 210.142 1 195.81 ? C17 DEQ 4001 A 1 HETATM 20 C C18 DEQ . . . B 2 0.269 85.952 208.887 1 214.64 ? C18 DEQ 4001 A 1 HETATM 21 C C19 DEQ . . . B 2 -1.199 85.798 205.713 1 396.18 ? C19 DEQ 4001 A 1 HETATM 22 C C20 DEQ . . . B 2 -1.779 86.836 206.822 1 413.78 ? C20 DEQ 4001 A 1 HETATM 23 C C21 DEQ . . . B 2 -2.829 88.288 206.954 1 401.45 ? C21 DEQ 4001 A 1 HETATM 24 C C22 DEQ . . . B 2 -3.186 88.172 208.42 1 322.11 ? C22 DEQ 4001 A 1 HETATM 25 C C23 DEQ . . . B 2 -4.603 89.16 209.011 1 273.17 ? C23 DEQ 4001 A 1 HETATM 26 C C24 DEQ . . . B 2 -4.609 88.644 210.634 1 256.23 ? C24 DEQ 4001 A 1 HETATM 27 C C25 DEQ . . . B 2 -5.072 88.901 211.816 1 267.77 ? C25 DEQ 4001 A 1 HETATM 28 C C26 DEQ . . . B 2 -5.123 90.171 212.465 1 319.6 ? C26 DEQ 4001 A 1 HETATM 29 C C27 DEQ . . . B 2 -5.054 90.497 213.849 1 376.98 ? C27 DEQ 4001 A 1 HETATM 30 C C28 DEQ . . . B 2 -5.172 88.893 214.743 1 346.22 ? C28 DEQ 4001 A 1 HETATM 31 C C30 DEQ . . . B 2 -5.385 87.676 217.518 1 204.34 ? C30 DEQ 4001 A 1 HETATM 32 C C29 DEQ . . . B 2 0.943 85.542 203.635 1 298.21 ? C29 DEQ 4001 A 1 HETATM 33 N N4 DEQ . . . B 2 -0.741 88.661 218.609 1 196.08 ? N4 DEQ 4001 A 1 HETATM 34 N N3 DEQ . . . B 2 4.67 86.371 206.444 1 210.66 ? N3 DEQ 4001 A 1 # _model_server_stats.io_time_ms 64 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 33 _model_server_stats.query_time_ms 344 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 34 #