data_1OYK
#
_model_server_result.job_id            Pa90FPsOyf1lG2-NsMQfMQ 
_model_server_result.datetime_utc      '2025-01-20 14:18:02' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1oyk 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":300}' 
#
_entry.id    1OYK 
#
_exptl.entry_id    1OYK 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              616.487 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PROTOPORPHYRIN IX CONTAINING FE' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1OYK 
_cell.length_a            55.665 
_cell.length_b            77.662 
_cell.length_c            100.318 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1OYK 
_symmetry.cell_setting             orthorhombic 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,E 1 1 
B,D,F 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 25 A HIS 25 1_555 C FE HEM . A HEM 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.18 ? 
metalc ? metalc2 B NE2 HIS 25 B HIS 25 1_555 D FE HEM . B HEM 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.119 ? 
metalc ? metalc3 D FE HEM . B HEM 300 1_555 F O HOH . B HOH 320 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.85 ? 
#
_chem_comp.formula           'C34 H32 Fe N4 O4' 
_chem_comp.formula_weight    616.487 
_chem_comp.id                HEM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PROTOPORPHYRIN IX CONTAINING FE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     HEME 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CHA C1A HEM sing 116 n n 
CHA C4D HEM doub 117 n n 
CHA HHA HEM sing 118 n n 
CHB C4A HEM sing 119 n n 
CHB C1B HEM doub 120 n n 
CHB HHB HEM sing 121 n n 
CHC C4B HEM sing 122 n n 
CHC C1C HEM doub 123 n n 
CHC HHC HEM sing 124 n n 
CHD C4C HEM doub 125 n n 
CHD C1D HEM sing 126 n n 
CHD HHD HEM sing 127 n n 
C1A C2A HEM doub 128 n y 
C1A NA HEM sing 129 n y 
C2A C3A HEM sing 130 n y 
C2A CAA HEM sing 131 n n 
C3A C4A HEM doub 132 n y 
C3A CMA HEM sing 133 n n 
C4A NA HEM sing 134 n y 
CMA HMA HEM sing 135 n n 
CMA HMAA HEM sing 136 n n 
CMA HMAB HEM sing 137 n n 
CAA CBA HEM sing 138 n n 
CAA HAA HEM sing 139 n n 
CAA HAAA HEM sing 140 n n 
CBA CGA HEM sing 141 n n 
CBA HBA HEM sing 142 n n 
CBA HBAA HEM sing 143 n n 
CGA O1A HEM doub 144 n n 
CGA O2A HEM sing 145 n n 
C1B C2B HEM sing 146 n n 
C1B NB HEM sing 147 n n 
C2B C3B HEM doub 148 n n 
C2B CMB HEM sing 149 n n 
C3B C4B HEM sing 150 n n 
C3B CAB HEM sing 151 n n 
C4B NB HEM doub 152 n n 
CMB HMB HEM sing 153 n n 
CMB HMBA HEM sing 154 n n 
CMB HMBB HEM sing 155 n n 
CAB CBB HEM doub 156 n n 
CAB HAB HEM sing 157 n n 
CBB HBB HEM sing 158 n n 
CBB HBBA HEM sing 159 n n 
C1C C2C HEM sing 160 n y 
C1C NC HEM sing 161 n y 
C2C C3C HEM doub 162 n y 
C2C CMC HEM sing 163 n n 
C3C C4C HEM sing 164 n y 
C3C CAC HEM sing 165 n n 
C4C NC HEM sing 166 n y 
CMC HMC HEM sing 167 n n 
CMC HMCA HEM sing 168 n n 
CMC HMCB HEM sing 169 n n 
CAC CBC HEM doub 170 n n 
CAC HAC HEM sing 171 n n 
CBC HBC HEM sing 172 n n 
CBC HBCA HEM sing 173 n n 
C1D C2D HEM sing 174 n n 
C1D ND HEM doub 175 n n 
C2D C3D HEM doub 176 n n 
C2D CMD HEM sing 177 n n 
C3D C4D HEM sing 178 n n 
C3D CAD HEM sing 179 n n 
C4D ND HEM sing 180 n n 
CMD HMD HEM sing 181 n n 
CMD HMDA HEM sing 182 n n 
CMD HMDB HEM sing 183 n n 
CAD CBD HEM sing 184 n n 
CAD HAD HEM sing 185 n n 
CAD HADA HEM sing 186 n n 
CBD CGD HEM sing 187 n n 
CBD HBD HEM sing 188 n n 
CBD HBDA HEM sing 189 n n 
CGD O1D HEM doub 190 n n 
CGD O2D HEM sing 191 n n 
O2A H2A HEM sing 192 n n 
O2D H2D HEM sing 193 n n 
FE NA HEM sing 194 n n 
FE NB HEM sing 195 n n 
FE NC HEM sing 196 n n 
FE ND HEM sing 197 n n 
#
_atom_sites.entry_id                     1OYK 
_atom_sites.fract_transf_matrix[1][1]    0.017965 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012876 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009968 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 HEM A 1 300 300 HEM HEM . 
D 2 HEM B 1 300 300 HEM HEM . 
E 3 HOH A 1 301 1 HOH HOH . 
E 3 HOH A 2 302 2 HOH HOH . 
E 3 HOH A 3 303 4 HOH HOH . 
E 3 HOH A 4 304 5 HOH HOH . 
E 3 HOH A 5 305 6 HOH HOH . 
E 3 HOH A 6 306 9 HOH HOH . 
E 3 HOH A 7 307 11 HOH HOH . 
E 3 HOH A 8 308 12 HOH HOH . 
E 3 HOH A 9 309 13 HOH HOH . 
E 3 HOH A 10 310 14 HOH HOH . 
E 3 HOH A 11 311 15 HOH HOH . 
E 3 HOH A 12 312 16 HOH HOH . 
E 3 HOH A 13 313 18 HOH HOH . 
E 3 HOH A 14 314 19 HOH HOH . 
E 3 HOH A 15 315 27 HOH HOH . 
E 3 HOH A 16 316 28 HOH HOH . 
E 3 HOH A 17 317 29 HOH HOH . 
E 3 HOH A 18 318 30 HOH HOH . 
E 3 HOH A 19 319 31 HOH HOH . 
E 3 HOH A 20 320 32 HOH HOH . 
E 3 HOH A 21 321 35 HOH HOH . 
E 3 HOH A 22 322 37 HOH HOH . 
E 3 HOH A 23 323 38 HOH HOH . 
E 3 HOH A 24 324 39 HOH HOH . 
E 3 HOH A 25 325 40 HOH HOH . 
E 3 HOH A 26 326 41 HOH HOH . 
E 3 HOH A 27 327 42 HOH HOH . 
E 3 HOH A 28 328 43 HOH HOH . 
E 3 HOH A 29 329 44 HOH HOH . 
E 3 HOH A 30 330 46 HOH HOH . 
E 3 HOH A 31 331 47 HOH HOH . 
E 3 HOH A 32 332 48 HOH HOH . 
E 3 HOH A 33 333 49 HOH HOH . 
E 3 HOH A 34 334 63 HOH HOH . 
E 3 HOH A 35 335 80 HOH HOH . 
E 3 HOH A 36 336 81 HOH HOH . 
E 3 HOH A 37 337 82 HOH HOH . 
E 3 HOH A 38 338 83 HOH HOH . 
E 3 HOH A 39 339 84 HOH HOH . 
E 3 HOH A 40 340 85 HOH HOH . 
E 3 HOH A 41 341 86 HOH HOH . 
E 3 HOH A 42 342 87 HOH HOH . 
E 3 HOH A 43 343 88 HOH HOH . 
E 3 HOH A 44 344 89 HOH HOH . 
E 3 HOH A 45 345 91 HOH HOH . 
E 3 HOH A 46 346 93 HOH HOH . 
F 3 HOH B 1 301 3 HOH HOH . 
F 3 HOH B 2 302 7 HOH HOH . 
F 3 HOH B 3 303 8 HOH HOH . 
F 3 HOH B 4 304 10 HOH HOH . 
F 3 HOH B 5 305 17 HOH HOH . 
F 3 HOH B 6 306 20 HOH HOH . 
F 3 HOH B 7 307 21 HOH HOH . 
F 3 HOH B 8 308 22 HOH HOH . 
F 3 HOH B 9 309 23 HOH HOH . 
F 3 HOH B 10 310 24 HOH HOH . 
F 3 HOH B 11 311 25 HOH HOH . 
F 3 HOH B 12 312 26 HOH HOH . 
F 3 HOH B 13 313 33 HOH HOH . 
F 3 HOH B 14 314 34 HOH HOH . 
F 3 HOH B 15 315 36 HOH HOH . 
F 3 HOH B 16 316 45 HOH HOH . 
F 3 HOH B 17 317 50 HOH HOH . 
F 3 HOH B 18 318 51 HOH HOH . 
F 3 HOH B 19 319 52 HOH HOH . 
F 3 HOH B 20 320 53 HOH HOH . 
F 3 HOH B 21 321 54 HOH HOH . 
F 3 HOH B 22 322 55 HOH HOH . 
F 3 HOH B 23 323 56 HOH HOH . 
F 3 HOH B 24 324 57 HOH HOH . 
F 3 HOH B 25 325 58 HOH HOH . 
F 3 HOH B 26 326 59 HOH HOH . 
F 3 HOH B 27 327 60 HOH HOH . 
F 3 HOH B 28 328 61 HOH HOH . 
F 3 HOH B 29 329 62 HOH HOH . 
F 3 HOH B 30 330 64 HOH HOH . 
F 3 HOH B 31 331 65 HOH HOH . 
F 3 HOH B 32 332 66 HOH HOH . 
F 3 HOH B 33 333 67 HOH HOH . 
F 3 HOH B 34 334 68 HOH HOH . 
F 3 HOH B 35 335 69 HOH HOH . 
F 3 HOH B 36 336 70 HOH HOH . 
F 3 HOH B 37 337 71 HOH HOH . 
F 3 HOH B 38 338 72 HOH HOH . 
F 3 HOH B 39 339 73 HOH HOH . 
F 3 HOH B 40 340 74 HOH HOH . 
F 3 HOH B 41 341 75 HOH HOH . 
F 3 HOH B 42 342 76 HOH HOH . 
F 3 HOH B 43 343 77 HOH HOH . 
F 3 HOH B 44 344 79 HOH HOH . 
F 3 HOH B 45 345 90 HOH HOH . 
F 3 HOH B 46 346 92 HOH HOH . 
F 3 HOH B 47 347 94 HOH HOH . 
F 3 HOH B 48 348 95 HOH HOH . 
F 3 HOH B 49 349 96 HOH HOH . 
F 3 HOH B 50 350 97 HOH HOH . 
F 3 HOH B 51 351 98 HOH HOH . 
F 3 HOH B 52 352 99 HOH HOH . 
F 3 HOH B 53 353 100 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CHA HEM . . . D 2 8.641 22.718 68.462 1 67.25 ? CHA HEM 300 B 1 
HETATM 2 C CHB HEM . . . D 2 7.725 21.548 73.075 1 67.22 ? CHB HEM 300 B 1 
HETATM 3 C CHC HEM . . . D 2 4.106 18.64 71.591 1 67.19 ? CHC HEM 300 B 1 
HETATM 4 C CHD HEM . . . D 2 4.947 19.945 66.958 1 66.72 ? CHD HEM 300 B 1 
HETATM 5 C C1A HEM . . . D 2 8.751 22.575 69.831 1 67.53 ? C1A HEM 300 B 1 
HETATM 6 C C2A HEM . . . D 2 9.722 23.273 70.673 1 68.05 ? C2A HEM 300 B 1 
HETATM 7 C C3A HEM . . . D 2 9.346 23.042 71.939 1 67.77 ? C3A HEM 300 B 1 
HETATM 8 C C4A HEM . . . D 2 8.299 22.072 71.928 1 67.43 ? C4A HEM 300 B 1 
HETATM 9 C CMA HEM . . . D 2 9.84 23.889 73.102 1 67.92 ? CMA HEM 300 B 1 
HETATM 10 C CAA HEM . . . D 2 11.04 24.004 70.372 1 68.68 ? CAA HEM 300 B 1 
HETATM 11 C CBA HEM . . . D 2 11.01 25.343 69.646 1 69.56 ? CBA HEM 300 B 1 
HETATM 12 C CGA HEM . . . D 2 11.415 25.24 68.177 1 70.27 ? CGA HEM 300 B 1 
HETATM 13 O O1A HEM . . . D 2 11.334 26.273 67.476 1 70.31 ? O1A HEM 300 B 1 
HETATM 14 O O2A HEM . . . D 2 11.82 24.139 67.725 1 70.5 ? O2A HEM 300 B 1 
HETATM 15 C C1B HEM . . . D 2 6.631 20.673 73.06 1 67.27 ? C1B HEM 300 B 1 
HETATM 16 C C2B HEM . . . D 2 5.997 20.149 74.25 1 67.4 ? C2B HEM 300 B 1 
HETATM 17 C C3B HEM . . . D 2 5.071 19.254 73.835 1 67.29 ? C3B HEM 300 B 1 
HETATM 18 C C4B HEM . . . D 2 5.051 19.286 72.382 1 67.23 ? C4B HEM 300 B 1 
HETATM 19 C CMB HEM . . . D 2 6.257 20.584 75.696 1 67.36 ? CMB HEM 300 B 1 
HETATM 20 C CAB HEM . . . D 2 4.355 18.411 74.671 1 67.53 ? CAB HEM 300 B 1 
HETATM 21 C CBB HEM . . . D 2 4.839 17.063 74.988 1 67.58 ? CBB HEM 300 B 1 
HETATM 22 C C1C HEM . . . D 2 3.968 18.813 70.217 1 67 ? C1C HEM 300 B 1 
HETATM 23 C C2C HEM . . . D 2 2.945 18.16 69.428 1 66.9 ? C2C HEM 300 B 1 
HETATM 24 C C3C HEM . . . D 2 3.168 18.521 68.143 1 66.82 ? C3C HEM 300 B 1 
HETATM 25 C C4C HEM . . . D 2 4.32 19.423 68.118 1 66.8 ? C4C HEM 300 B 1 
HETATM 26 C CMC HEM . . . D 2 1.843 17.233 69.928 1 66.62 ? CMC HEM 300 B 1 
HETATM 27 C CAC HEM . . . D 2 2.488 18.007 67.063 1 67 ? CAC HEM 300 B 1 
HETATM 28 C CBC HEM . . . D 2 2.991 16.789 66.466 1 67.3 ? CBC HEM 300 B 1 
HETATM 29 C C1D HEM . . . D 2 6.097 20.745 66.958 1 66.55 ? C1D HEM 300 B 1 
HETATM 30 C C2D HEM . . . D 2 6.711 21.361 65.79 1 66.57 ? C2D HEM 300 B 1 
HETATM 31 C C3D HEM . . . D 2 7.707 22.149 66.223 1 66.63 ? C3D HEM 300 B 1 
HETATM 32 C C4D HEM . . . D 2 7.727 22.036 67.655 1 66.81 ? C4D HEM 300 B 1 
HETATM 33 C CMD HEM . . . D 2 6.315 21.238 64.328 1 66.41 ? CMD HEM 300 B 1 
HETATM 34 C CAD HEM . . . D 2 8.605 23.012 65.361 1 66.65 ? CAD HEM 300 B 1 
HETATM 35 C CBD HEM . . . D 2 7.837 24.163 64.729 1 67.16 ? CBD HEM 300 B 1 
HETATM 36 C CGD HEM . . . D 2 8.661 24.93 63.709 1 67.4 ? CGD HEM 300 B 1 
HETATM 37 O O1D HEM . . . D 2 8.075 25.711 62.925 1 67.49 ? O1D HEM 300 B 1 
HETATM 38 O O2D HEM . . . D 2 9.898 24.755 63.692 1 67.41 ? O2D HEM 300 B 1 
HETATM 39 N NA HEM . . . D 2 7.882 21.813 70.603 1 67.33 ? NA HEM 300 B 1 
HETATM 40 N NB HEM . . . D 2 6 20.173 71.892 1 67.25 ? NB HEM 300 B 1 
HETATM 41 N NC HEM . . . D 2 4.792 19.609 69.417 1 66.99 ? NC HEM 300 B 1 
HETATM 42 N ND HEM . . . D 2 6.743 21.164 68.106 1 66.71 ? ND HEM 300 B 1 
HETATM 43 FE FE HEM . . . D 2 6.33 20.682 69.972 1 66.77 ? FE HEM 300 B 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           268 
_model_server_stats.encode_time_ms          14 
_model_server_stats.element_count           43 
#