data_1OYQ # _model_server_result.job_id '_HvGuxpGjIkLsVJtCg9Mdg' _model_server_result.datetime_utc '2024-11-01 05:32:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1oyq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":1}' # _entry.id 1OYQ # _exptl.entry_id 1OYQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 525.602 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '[(1-{2[(4-CARBAMIMIDOYL-PHENYLAMINO)-METHYL]-1-METHYL-1H-BENZOIMIDAZOL-5-YL}-CYCLOPROPYL)-PYRIDIN-2-YL-METHYLENEAMINOOXY]-ACETIC ACID ETHYL ESTER' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1OYQ _cell.length_a 63.2 _cell.length_b 69.3 _cell.length_c 63.8 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1OYQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 7 A CYS 22 1_555 A SG CYS 137 A CYS 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf2 A SG CYS 25 A CYS 42 1_555 A SG CYS 41 A CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf3 A SG CYS 109 A CYS 128 1_555 A SG CYS 210 A CYS 232 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf4 A SG CYS 116 A CYS 136 1_555 A SG CYS 183 A CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? disulf ? disulf5 A SG CYS 148 A CYS 168 1_555 A SG CYS 162 A CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf6 A SG CYS 173 A CYS 191 1_555 A SG CYS 197 A CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? metalc ? metalc1 B CA CA . A CA 800 1_555 A OE1 GLU 52 A GLU 70 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.335 ? metalc ? metalc2 B CA CA . A CA 800 1_555 A O ASN 54 A ASN 72 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.219 ? metalc ? metalc3 B CA CA . A CA 800 1_555 A O VAL 57 A VAL 75 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.239 ? metalc ? metalc4 B CA CA . A CA 800 1_555 A OE2 GLU 62 A GLU 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.297 ? metalc ? metalc5 B CA CA . A CA 800 1_555 E O HOH . A HOH 510 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.373 ? metalc ? metalc6 B CA CA . A CA 800 1_555 E O HOH . A HOH 516 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.282 ? # _chem_comp.formula 'C29 H31 N7 O3' _chem_comp.formula_weight 525.602 _chem_comp.id T87 _chem_comp.mon_nstd_flag . _chem_comp.name '[(1-{2[(4-CARBAMIMIDOYL-PHENYLAMINO)-METHYL]-1-METHYL-1H-BENZOIMIDAZOL-5-YL}-CYCLOPROPYL)-PYRIDIN-2-YL-METHYLENEAMINOOXY]-ACETIC ACID ETHYL ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1OYQ _atom_sites.fract_transf_matrix[1][1] 0.015823 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01443 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015674 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CA A 1 800 800 CA CA . C 3 SO4 A 1 999 999 SO4 SO4 . D 4 T87 A 1 1 1 T87 T87 . E 5 HOH A 1 500 500 HOH HOH . E 5 HOH A 2 501 501 HOH HOH . E 5 HOH A 3 502 502 HOH HOH . E 5 HOH A 4 503 503 HOH HOH . E 5 HOH A 5 504 504 HOH HOH . E 5 HOH A 6 505 505 HOH HOH . E 5 HOH A 7 506 506 HOH HOH . E 5 HOH A 8 507 507 HOH HOH . E 5 HOH A 9 508 508 HOH HOH . E 5 HOH A 10 509 509 HOH HOH . E 5 HOH A 11 510 510 HOH HOH . E 5 HOH A 12 511 511 HOH HOH . E 5 HOH A 13 512 512 HOH HOH . E 5 HOH A 14 513 513 HOH HOH . E 5 HOH A 15 514 514 HOH HOH . E 5 HOH A 16 515 515 HOH HOH . E 5 HOH A 17 516 516 HOH HOH . E 5 HOH A 18 517 517 HOH HOH . E 5 HOH A 19 518 518 HOH HOH . E 5 HOH A 20 519 519 HOH HOH . E 5 HOH A 21 520 520 HOH HOH . E 5 HOH A 22 521 521 HOH HOH . E 5 HOH A 23 522 522 HOH HOH . E 5 HOH A 24 523 523 HOH HOH . E 5 HOH A 25 524 524 HOH HOH . E 5 HOH A 26 525 525 HOH HOH . E 5 HOH A 27 526 526 HOH HOH . E 5 HOH A 28 527 527 HOH HOH . E 5 HOH A 29 528 528 HOH HOH . E 5 HOH A 30 529 529 HOH HOH . E 5 HOH A 31 530 530 HOH HOH . E 5 HOH A 32 531 531 HOH HOH . E 5 HOH A 33 532 532 HOH HOH . E 5 HOH A 34 533 533 HOH HOH . E 5 HOH A 35 534 534 HOH HOH . E 5 HOH A 36 535 535 HOH HOH . E 5 HOH A 37 536 536 HOH HOH . E 5 HOH A 38 537 537 HOH HOH . E 5 HOH A 39 538 538 HOH HOH . E 5 HOH A 40 539 539 HOH HOH . E 5 HOH A 41 540 540 HOH HOH . E 5 HOH A 42 541 541 HOH HOH . E 5 HOH A 43 542 542 HOH HOH . E 5 HOH A 44 543 543 HOH HOH . E 5 HOH A 45 544 544 HOH HOH . E 5 HOH A 46 545 545 HOH HOH . E 5 HOH A 47 546 546 HOH HOH . E 5 HOH A 48 547 547 HOH HOH . E 5 HOH A 49 548 548 HOH HOH . E 5 HOH A 50 549 549 HOH HOH . E 5 HOH A 51 550 550 HOH HOH . E 5 HOH A 52 551 551 HOH HOH . E 5 HOH A 53 552 552 HOH HOH . E 5 HOH A 54 553 553 HOH HOH . E 5 HOH A 55 554 554 HOH HOH . E 5 HOH A 56 555 555 HOH HOH . E 5 HOH A 57 556 556 HOH HOH . E 5 HOH A 58 557 557 HOH HOH . E 5 HOH A 59 558 558 HOH HOH . E 5 HOH A 60 559 559 HOH HOH . E 5 HOH A 61 560 560 HOH HOH . E 5 HOH A 62 561 561 HOH HOH . E 5 HOH A 63 562 562 HOH HOH . E 5 HOH A 64 563 563 HOH HOH . E 5 HOH A 65 564 564 HOH HOH . E 5 HOH A 66 565 565 HOH HOH . E 5 HOH A 67 566 566 HOH HOH . E 5 HOH A 68 567 567 HOH HOH . E 5 HOH A 69 568 568 HOH HOH . E 5 HOH A 70 569 569 HOH HOH . E 5 HOH A 71 570 570 HOH HOH . E 5 HOH A 72 571 571 HOH HOH . E 5 HOH A 73 572 572 HOH HOH . E 5 HOH A 74 573 573 HOH HOH . E 5 HOH A 75 574 574 HOH HOH . E 5 HOH A 76 575 575 HOH HOH . E 5 HOH A 77 576 576 HOH HOH . E 5 HOH A 78 577 577 HOH HOH . E 5 HOH A 79 578 578 HOH HOH . E 5 HOH A 80 579 579 HOH HOH . E 5 HOH A 81 580 580 HOH HOH . E 5 HOH A 82 581 581 HOH HOH . E 5 HOH A 83 582 582 HOH HOH . E 5 HOH A 84 583 583 HOH HOH . E 5 HOH A 85 584 584 HOH HOH . E 5 HOH A 86 585 585 HOH HOH . E 5 HOH A 87 586 586 HOH HOH . E 5 HOH A 88 587 587 HOH HOH . E 5 HOH A 89 588 588 HOH HOH . E 5 HOH A 90 589 589 HOH HOH . E 5 HOH A 91 590 590 HOH HOH . E 5 HOH A 92 591 591 HOH HOH . E 5 HOH A 93 592 592 HOH HOH . E 5 HOH A 94 593 593 HOH HOH . E 5 HOH A 95 594 594 HOH HOH . E 5 HOH A 96 595 595 HOH HOH . E 5 HOH A 97 596 596 HOH HOH . E 5 HOH A 98 597 597 HOH HOH . E 5 HOH A 99 598 598 HOH HOH . E 5 HOH A 100 599 599 HOH HOH . E 5 HOH A 101 600 600 HOH HOH . E 5 HOH A 102 601 601 HOH HOH . E 5 HOH A 103 602 602 HOH HOH . E 5 HOH A 104 603 603 HOH HOH . E 5 HOH A 105 604 604 HOH HOH . E 5 HOH A 106 605 605 HOH HOH . E 5 HOH A 107 606 606 HOH HOH . E 5 HOH A 108 607 607 HOH HOH . E 5 HOH A 109 608 608 HOH HOH . E 5 HOH A 110 609 609 HOH HOH . E 5 HOH A 111 610 610 HOH HOH . E 5 HOH A 112 611 611 HOH HOH . E 5 HOH A 113 612 612 HOH HOH . E 5 HOH A 114 613 613 HOH HOH . E 5 HOH A 115 614 614 HOH HOH . E 5 HOH A 116 615 615 HOH HOH . E 5 HOH A 117 616 616 HOH HOH . E 5 HOH A 118 617 617 HOH HOH . E 5 HOH A 119 618 618 HOH HOH . E 5 HOH A 120 619 619 HOH HOH . E 5 HOH A 121 620 620 HOH HOH . E 5 HOH A 122 621 621 HOH HOH . E 5 HOH A 123 622 622 HOH HOH . E 5 HOH A 124 623 623 HOH HOH . E 5 HOH A 125 624 624 HOH HOH . E 5 HOH A 126 625 625 HOH HOH . E 5 HOH A 127 626 626 HOH HOH . E 5 HOH A 128 627 627 HOH HOH . E 5 HOH A 129 628 628 HOH HOH . E 5 HOH A 130 629 629 HOH HOH . E 5 HOH A 131 630 630 HOH HOH . E 5 HOH A 132 631 631 HOH HOH . E 5 HOH A 133 632 632 HOH HOH . E 5 HOH A 134 633 633 HOH HOH . E 5 HOH A 135 634 634 HOH HOH . E 5 HOH A 136 635 635 HOH HOH . E 5 HOH A 137 636 636 HOH HOH . E 5 HOH A 138 637 637 HOH HOH . E 5 HOH A 139 638 638 HOH HOH . E 5 HOH A 140 639 639 HOH HOH . E 5 HOH A 141 640 640 HOH HOH . E 5 HOH A 142 641 641 HOH HOH . E 5 HOH A 143 642 642 HOH HOH . E 5 HOH A 144 643 643 HOH HOH . E 5 HOH A 145 644 644 HOH HOH . E 5 HOH A 146 645 645 HOH HOH . E 5 HOH A 147 646 646 HOH HOH . E 5 HOH A 148 647 647 HOH HOH . E 5 HOH A 149 648 648 HOH HOH . E 5 HOH A 150 649 649 HOH HOH . E 5 HOH A 151 650 650 HOH HOH . E 5 HOH A 152 651 651 HOH HOH . E 5 HOH A 153 652 652 HOH HOH . E 5 HOH A 154 653 653 HOH HOH . E 5 HOH A 155 654 654 HOH HOH . E 5 HOH A 156 655 655 HOH HOH . E 5 HOH A 157 656 656 HOH HOH . E 5 HOH A 158 657 657 HOH HOH . E 5 HOH A 159 658 658 HOH HOH . E 5 HOH A 160 659 659 HOH HOH . E 5 HOH A 161 660 660 HOH HOH . E 5 HOH A 162 661 661 HOH HOH . E 5 HOH A 163 662 662 HOH HOH . E 5 HOH A 164 663 663 HOH HOH . E 5 HOH A 165 664 664 HOH HOH . E 5 HOH A 166 665 665 HOH HOH . E 5 HOH A 167 666 666 HOH HOH . E 5 HOH A 168 667 667 HOH HOH . E 5 HOH A 169 668 668 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 T87 . . . D 4 -5.019 10.131 19.805 1 18.69 ? N1 T87 1 A 1 HETATM 2 N N2 T87 . . . D 4 -3.109 10.832 19.018 1 17.81 ? N2 T87 1 A 1 HETATM 3 C C1 T87 . . . D 4 -3.759 9.811 19.543 1 18.87 ? C1 T87 1 A 1 HETATM 4 C C2 T87 . . . D 4 -3.199 8.547 19.767 1 18.01 ? C2 T87 1 A 1 HETATM 5 C C3 T87 . . . D 4 -3.96 7.491 20.359 1 19.2 ? C3 T87 1 A 1 HETATM 6 C C4 T87 . . . D 4 -3.405 6.226 20.581 1 20.73 ? C4 T87 1 A 1 HETATM 7 C C5 T87 . . . D 4 -2.067 5.96 20.219 1 20.29 ? C5 T87 1 A 1 HETATM 8 C C6 T87 . . . D 4 -1.286 6.972 19.635 1 20.18 ? C6 T87 1 A 1 HETATM 9 C C7 T87 . . . D 4 -1.837 8.244 19.411 1 17.99 ? C7 T87 1 A 1 HETATM 10 N N T87 . . . D 4 -1.462 4.671 20.428 1 23.09 ? N T87 1 A 1 HETATM 11 C C T87 . . . D 4 -1.914 3.581 21.325 1 28.6 ? C T87 1 A 1 HETATM 12 N N3 T87 . . . D 4 -3.321 4.279 23.276 1 36.84 ? N3 T87 1 A 1 HETATM 13 C C8 T87 . . . D 4 -2.049 3.947 22.809 1 32.16 ? C8 T87 1 A 1 HETATM 14 N N9 T87 . . . D 4 -0.936 3.954 23.679 1 33.36 ? N9 T87 1 A 1 HETATM 15 C C3A T87 . . . D 4 -1.605 4.343 24.84 1 35.53 ? C3A T87 1 A 1 HETATM 16 C C7A T87 . . . D 4 -3.018 4.535 24.594 1 37.25 ? C7A T87 1 A 1 HETATM 17 C C10 T87 . . . D 4 -1.078 4.56 26.155 1 37.27 ? C10 T87 1 A 1 HETATM 18 C C11 T87 . . . D 4 -1.948 4.961 27.181 1 37.43 ? C11 T87 1 A 1 HETATM 19 C C12 T87 . . . D 4 -3.347 5.154 26.954 1 38.48 ? C12 T87 1 A 1 HETATM 20 C C13 T87 . . . D 4 -3.887 4.941 25.656 1 37.55 ? C13 T87 1 A 1 HETATM 21 C C14 T87 . . . D 4 0.51 3.647 23.449 1 32.01 ? C14 T87 1 A 1 HETATM 22 C C9 T87 . . . D 4 -5.781 5.603 28.077 1 40.02 ? C9 T87 1 A 1 HETATM 23 C C15 T87 . . . D 4 -5.03 6.905 27.708 1 41.15 ? C15 T87 1 A 1 HETATM 24 C C16 T87 . . . D 4 -4.27 5.667 28.112 1 40.18 ? C16 T87 1 A 1 HETATM 25 C C17 T87 . . . D 4 -3.624 5.241 29.462 1 40.7 ? C17 T87 1 A 1 HETATM 26 N N4 T87 . . . D 4 -3.773 4.009 29.897 1 40.24 ? N4 T87 1 A 1 HETATM 27 N N5 T87 . . . D 4 -2.806 6.29 31.693 1 40.87 ? N5 T87 1 A 1 HETATM 28 C C18 T87 . . . D 4 -2.789 6.283 30.273 1 39.63 ? C18 T87 1 A 1 HETATM 29 C C19 T87 . . . D 4 -2 7.241 29.594 1 38.65 ? C19 T87 1 A 1 HETATM 30 C C20 T87 . . . D 4 -1.242 8.185 30.327 1 39.32 ? C20 T87 1 A 1 HETATM 31 C C21 T87 . . . D 4 -1.261 8.19 31.745 1 39.59 ? C21 T87 1 A 1 HETATM 32 C C22 T87 . . . D 4 -2.043 7.242 32.432 1 39.81 ? C22 T87 1 A 1 HETATM 33 O OH T87 . . . D 4 -4.571 3.037 29.1 0 37.23 ? OH T87 1 A 1 HETATM 34 C C23 T87 . . . D 4 -4.6 1.762 29.746 0 35.7 ? C23 T87 1 A 1 HETATM 35 C C24 T87 . . . D 4 -5.37 0.767 28.86 0 34.49 ? C24 T87 1 A 1 HETATM 36 O O2 T87 . . . D 4 -6.052 -0.119 29.396 0 34.24 ? O2 T87 1 A 1 HETATM 37 O O3 T87 . . . D 4 -5.287 0.881 27.487 0 34 ? O3 T87 1 A 1 HETATM 38 C C25 T87 . . . D 4 -6.281 0.279 25.343 0 33.59 ? C25 T87 1 A 1 HETATM 39 C C26 T87 . . . D 4 -6.067 -0.129 26.815 0 33.65 ? C26 T87 1 A 1 # _model_server_stats.io_time_ms 51 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 31 _model_server_stats.query_time_ms 379 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 39 #