data_1OYV
#
_model_server_result.job_id            uPT46yJ48vK5x5h0MDarAA 
_model_server_result.datetime_utc      '2025-03-05 20:29:20' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1oyv 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":276}' 
#
_entry.id    1OYV 
#
_exptl.entry_id    1OYV 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              40.078 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'CALCIUM ION' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          119.54 
_cell.angle_gamma         90 
_cell.entry_id            1OYV 
_cell.length_a            154.971 
_cell.length_b            55.099 
_cell.length_c            91.338 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1OYV 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 E N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 C SG CYS 3 I CYS 3 1_555 C SG CYS 91 I CYS 91 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf2 C SG CYS 7 I CYS 7 1_555 C SG CYS 87 I CYS 87 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? 
disulf ? disulf3 C SG CYS 15 I CYS 15 1_555 C SG CYS 97 I CYS 97 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf4 C SG CYS 27 I CYS 27 1_555 C SG CYS 64 I CYS 64 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? 
disulf ? disulf5 C SG CYS 30 I CYS 30 1_555 C SG CYS 48 I CYS 48 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? 
disulf ? disulf6 C SG CYS 31 I CYS 31 1_555 C SG CYS 60 I CYS 60 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
disulf ? disulf7 C SG CYS 37 I CYS 37 1_555 C SG CYS 73 I CYS 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? 
disulf ? disulf8 C SG CYS 90 I CYS 90 1_555 C SG CYS 108 I CYS 108 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? 
metalc ? metalc1 A OE1 GLN 2 A GLN 2 1_555 D CA CA . A CA 276 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.343 ? 
metalc ? metalc2 A OD1 ASP 41 A ASP 41 1_555 D CA CA . A CA 276 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.424 ? 
metalc ? metalc3 A OD2 ASP 41 A ASP 41 1_555 D CA CA . A CA 276 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.183 ? 
metalc ? metalc4 A O LEU 74 A LEU 75 1_555 D CA CA . A CA 276 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.683 ? 
metalc ? metalc5 A OD1 ASN 76 A ASN 77 1_555 D CA CA . A CA 276 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.395 ? 
metalc ? metalc6 A O THR 78 A THR 79 1_555 D CA CA . A CA 276 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.253 ? 
metalc ? metalc7 A O VAL 80 A VAL 81 1_555 D CA CA . A CA 276 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.259 ? 
metalc ? metalc8 B OE1 GLN 2 B GLN 2 1_555 E CA CA . B CA 276 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.263 ? 
metalc ? metalc9 B OD2 ASP 41 B ASP 41 1_555 E CA CA . B CA 276 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.914 ? 
metalc ? metalc10 B OD1 ASP 41 B ASP 41 1_555 E CA CA . B CA 276 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.431 ? 
metalc ? metalc11 B O LEU 74 B LEU 75 1_555 E CA CA . B CA 276 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.871 ? 
metalc ? metalc12 B OD1 ASN 76 B ASN 77 1_555 E CA CA . B CA 276 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.684 ? 
metalc ? metalc13 B O THR 78 B THR 79 1_555 E CA CA . B CA 276 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.202 ? 
metalc ? metalc14 B O VAL 80 B VAL 81 1_555 E CA CA . B CA 276 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.409 ? 
#
_chem_comp.formula           'Ca 2' 
_chem_comp.formula_weight    40.078 
_chem_comp.id                CA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'CALCIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     1OYV 
_atom_sites.fract_transf_matrix[1][1]    0.006453 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.003657 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.018149 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012584 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 3 CA A 1 276 131 CA CA . 
E 3 CA B 1 276 132 CA CA . 
F 4 HOH A 1 277 1 HOH HOH . 
F 4 HOH A 2 278 2 HOH HOH . 
F 4 HOH A 3 279 3 HOH HOH . 
F 4 HOH A 4 280 4 HOH HOH . 
F 4 HOH A 5 281 5 HOH HOH . 
F 4 HOH A 6 282 6 HOH HOH . 
F 4 HOH A 7 283 7 HOH HOH . 
F 4 HOH A 8 284 9 HOH HOH . 
F 4 HOH A 9 285 10 HOH HOH . 
F 4 HOH A 10 286 12 HOH HOH . 
F 4 HOH A 11 287 13 HOH HOH . 
F 4 HOH A 12 288 14 HOH HOH . 
F 4 HOH A 13 289 15 HOH HOH . 
F 4 HOH A 14 290 16 HOH HOH . 
F 4 HOH A 15 291 19 HOH HOH . 
F 4 HOH A 16 292 20 HOH HOH . 
F 4 HOH A 17 293 23 HOH HOH . 
F 4 HOH A 18 294 24 HOH HOH . 
F 4 HOH A 19 295 26 HOH HOH . 
F 4 HOH A 20 296 27 HOH HOH . 
F 4 HOH A 21 297 29 HOH HOH . 
F 4 HOH A 22 298 30 HOH HOH . 
F 4 HOH A 23 299 31 HOH HOH . 
F 4 HOH A 24 300 34 HOH HOH . 
F 4 HOH A 25 301 35 HOH HOH . 
F 4 HOH A 26 302 36 HOH HOH . 
F 4 HOH A 27 303 37 HOH HOH . 
F 4 HOH A 28 304 38 HOH HOH . 
F 4 HOH A 29 305 40 HOH HOH . 
F 4 HOH A 30 306 47 HOH HOH . 
F 4 HOH A 31 307 48 HOH HOH . 
F 4 HOH A 32 308 49 HOH HOH . 
F 4 HOH A 33 309 50 HOH HOH . 
F 4 HOH A 34 310 52 HOH HOH . 
F 4 HOH A 35 311 54 HOH HOH . 
F 4 HOH A 36 312 55 HOH HOH . 
F 4 HOH A 37 313 58 HOH HOH . 
F 4 HOH A 38 314 63 HOH HOH . 
F 4 HOH A 39 315 64 HOH HOH . 
F 4 HOH A 40 316 65 HOH HOH . 
F 4 HOH A 41 317 66 HOH HOH . 
F 4 HOH A 42 318 71 HOH HOH . 
F 4 HOH A 43 319 73 HOH HOH . 
F 4 HOH A 44 320 75 HOH HOH . 
F 4 HOH A 45 321 77 HOH HOH . 
F 4 HOH A 46 322 82 HOH HOH . 
F 4 HOH A 47 323 85 HOH HOH . 
F 4 HOH A 48 324 86 HOH HOH . 
F 4 HOH A 49 325 87 HOH HOH . 
F 4 HOH A 50 326 89 HOH HOH . 
F 4 HOH A 51 327 92 HOH HOH . 
F 4 HOH A 52 328 93 HOH HOH . 
F 4 HOH A 53 329 94 HOH HOH . 
F 4 HOH A 54 330 95 HOH HOH . 
F 4 HOH A 55 331 96 HOH HOH . 
F 4 HOH A 56 332 97 HOH HOH . 
F 4 HOH A 57 333 100 HOH HOH . 
F 4 HOH A 58 334 101 HOH HOH . 
F 4 HOH A 59 335 103 HOH HOH . 
F 4 HOH A 60 336 105 HOH HOH . 
F 4 HOH A 61 337 106 HOH HOH . 
F 4 HOH A 62 338 107 HOH HOH . 
F 4 HOH A 63 339 111 HOH HOH . 
F 4 HOH A 64 340 112 HOH HOH . 
F 4 HOH A 65 341 113 HOH HOH . 
F 4 HOH A 66 342 114 HOH HOH . 
F 4 HOH A 67 343 117 HOH HOH . 
F 4 HOH A 68 344 118 HOH HOH . 
F 4 HOH A 69 345 119 HOH HOH . 
F 4 HOH A 70 346 120 HOH HOH . 
F 4 HOH A 71 347 121 HOH HOH . 
F 4 HOH A 72 348 122 HOH HOH . 
F 4 HOH A 73 349 123 HOH HOH . 
F 4 HOH A 74 350 124 HOH HOH . 
F 4 HOH A 75 351 125 HOH HOH . 
F 4 HOH A 76 352 127 HOH HOH . 
G 4 HOH B 1 277 11 HOH HOH . 
G 4 HOH B 2 278 17 HOH HOH . 
G 4 HOH B 3 279 18 HOH HOH . 
G 4 HOH B 4 280 22 HOH HOH . 
G 4 HOH B 5 281 28 HOH HOH . 
G 4 HOH B 6 282 32 HOH HOH . 
G 4 HOH B 7 283 33 HOH HOH . 
G 4 HOH B 8 284 39 HOH HOH . 
G 4 HOH B 9 285 41 HOH HOH . 
G 4 HOH B 10 286 43 HOH HOH . 
G 4 HOH B 11 287 44 HOH HOH . 
G 4 HOH B 12 288 45 HOH HOH . 
G 4 HOH B 13 289 46 HOH HOH . 
G 4 HOH B 14 290 51 HOH HOH . 
G 4 HOH B 15 291 53 HOH HOH . 
G 4 HOH B 16 292 56 HOH HOH . 
G 4 HOH B 17 293 59 HOH HOH . 
G 4 HOH B 18 294 60 HOH HOH . 
G 4 HOH B 19 295 69 HOH HOH . 
G 4 HOH B 20 296 70 HOH HOH . 
G 4 HOH B 21 297 76 HOH HOH . 
G 4 HOH B 22 298 78 HOH HOH . 
G 4 HOH B 23 299 79 HOH HOH . 
G 4 HOH B 24 300 81 HOH HOH . 
G 4 HOH B 25 301 83 HOH HOH . 
G 4 HOH B 26 302 88 HOH HOH . 
G 4 HOH B 27 303 90 HOH HOH . 
G 4 HOH B 28 304 91 HOH HOH . 
G 4 HOH B 29 305 99 HOH HOH . 
G 4 HOH B 30 306 102 HOH HOH . 
G 4 HOH B 31 307 104 HOH HOH . 
G 4 HOH B 32 308 109 HOH HOH . 
G 4 HOH B 33 309 115 HOH HOH . 
G 4 HOH B 34 310 116 HOH HOH . 
G 4 HOH B 35 311 126 HOH HOH . 
G 4 HOH B 36 312 128 HOH HOH . 
H 4 HOH I 1 124 8 HOH HOH . 
H 4 HOH I 2 125 21 HOH HOH . 
H 4 HOH I 3 126 25 HOH HOH . 
H 4 HOH I 4 127 42 HOH HOH . 
H 4 HOH I 5 128 57 HOH HOH . 
H 4 HOH I 6 129 61 HOH HOH . 
H 4 HOH I 7 130 62 HOH HOH . 
H 4 HOH I 8 131 67 HOH HOH . 
H 4 HOH I 9 132 68 HOH HOH . 
H 4 HOH I 10 133 72 HOH HOH . 
H 4 HOH I 11 134 74 HOH HOH . 
H 4 HOH I 12 135 80 HOH HOH . 
H 4 HOH I 13 136 84 HOH HOH . 
H 4 HOH I 14 137 98 HOH HOH . 
H 4 HOH I 15 138 108 HOH HOH . 
H 4 HOH I 16 139 110 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           CA 
_atom_site.label_atom_id         CA 
_atom_site.label_comp_id         CA 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         D 
_atom_site.label_entity_id       3 
_atom_site.Cartn_x               5.332 
_atom_site.Cartn_y               -8.291 
_atom_site.Cartn_z               43.815 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        34.33 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          CA 
_atom_site.auth_comp_id          CA 
_atom_site.auth_seq_id           276 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              0 
_model_server_stats.parse_time_ms           16 
_model_server_stats.create_model_time_ms    21 
_model_server_stats.query_time_ms           298 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           1 
#