data_1P0E
#
_model_server_result.job_id            96IHHHAhSmY3Ljg4sGpPjw 
_model_server_result.datetime_utc      '2024-11-06 14:33:53' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1p0e 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":900}' 
#
_entry.id    1P0E 
#
_exptl.entry_id    1P0E 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              179.179 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            7-DEAZA-7-AMINOMETHYL-GUANINE 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1P0E 
_cell.length_a            64.47 
_cell.length_b            91.87 
_cell.length_c            165.83 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1P0E 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 4_565 x,-y+1,-z 1 0 0 0 -1 0 0 0 -1 0 91.87 0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A SG CYS 318 A CYS 318 1_555 B ZN ZN . A ZN 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.261 ? 
metalc ? metalc2 A SG CYS 320 A CYS 320 1_555 B ZN ZN . A ZN 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.367 ? 
metalc ? metalc3 A SG CYS 323 A CYS 323 1_555 B ZN ZN . A ZN 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.216 ? 
metalc ? metalc4 A ND1 HIS 349 A HIS 349 1_555 B ZN ZN . A ZN 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.19 ? 
#
_chem_comp.formula           'C7 H9 N5 O' 
_chem_comp.formula_weight    179.179 
_chem_comp.id                PRF 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              7-DEAZA-7-AMINOMETHYL-GUANINE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 PRF sing 260 n n 
N1 C6 PRF sing 261 n n 
N1 H91 PRF sing 262 n n 
C2 N3 PRF doub 263 n n 
C2 N2 PRF sing 264 n n 
N3 C4 PRF sing 265 n n 
C4 C5 PRF doub 266 n y 
C4 N9 PRF sing 267 n y 
C5 C6 PRF sing 268 n n 
C5 C7 PRF sing 269 n y 
C6 O6 PRF doub 270 n n 
C7 C10 PRF sing 271 n n 
C7 C8 PRF doub 272 n y 
C10 N11 PRF sing 273 n n 
C10 H101 PRF sing 274 n n 
C10 H102 PRF sing 275 n n 
N11 H111 PRF sing 276 n n 
N11 H112 PRF sing 277 n n 
C8 N9 PRF sing 278 n y 
C8 H81 PRF sing 279 n n 
N9 HN91 PRF sing 280 n n 
N2 HN21 PRF sing 281 n n 
N2 HN22 PRF sing 282 n n 
#
_atom_sites.entry_id                     1P0E 
_atom_sites.fract_transf_matrix[1][1]    0.015511 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010885 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00603 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 ZN A 1 400 400 ZN ZN2 . 
C 3 PRF A 1 900 900 PRF PRF . 
D 4 HOH A 1 1005 1005 HOH HOH . 
D 4 HOH A 2 1020 1020 HOH HOH . 
D 4 HOH A 3 1021 1021 HOH HOH . 
D 4 HOH A 4 1022 1022 HOH HOH . 
D 4 HOH A 5 1023 1023 HOH HOH . 
D 4 HOH A 6 1024 1024 HOH HOH . 
D 4 HOH A 7 1025 1025 HOH HOH . 
D 4 HOH A 8 1026 1026 HOH HOH . 
D 4 HOH A 9 1027 1027 HOH HOH . 
D 4 HOH A 10 1028 1028 HOH HOH . 
D 4 HOH A 11 1029 1029 HOH HOH . 
D 4 HOH A 12 1030 1030 HOH HOH . 
D 4 HOH A 13 1031 1031 HOH HOH . 
D 4 HOH A 14 1032 1032 HOH HOH . 
D 4 HOH A 15 1033 1033 HOH HOH . 
D 4 HOH A 16 1034 1034 HOH HOH . 
D 4 HOH A 17 1035 1035 HOH HOH . 
D 4 HOH A 18 1036 1036 HOH HOH . 
D 4 HOH A 19 1037 1037 HOH HOH . 
D 4 HOH A 20 1038 1038 HOH HOH . 
D 4 HOH A 21 1039 1039 HOH HOH . 
D 4 HOH A 22 1040 1040 HOH HOH . 
D 4 HOH A 23 1041 1041 HOH HOH . 
D 4 HOH A 24 1042 1042 HOH HOH . 
D 4 HOH A 25 1043 1043 HOH HOH . 
D 4 HOH A 26 1044 1044 HOH HOH . 
D 4 HOH A 27 1045 1045 HOH HOH . 
D 4 HOH A 28 1046 1046 HOH HOH . 
D 4 HOH A 29 1047 1047 HOH HOH . 
D 4 HOH A 30 1048 1048 HOH HOH . 
D 4 HOH A 31 1049 1049 HOH HOH . 
D 4 HOH A 32 1050 1050 HOH HOH . 
D 4 HOH A 33 1051 1051 HOH HOH . 
D 4 HOH A 34 1052 1052 HOH HOH . 
D 4 HOH A 35 1053 1053 HOH HOH . 
D 4 HOH A 36 1054 1054 HOH HOH . 
D 4 HOH A 37 1055 1055 HOH HOH . 
D 4 HOH A 38 1056 1056 HOH HOH . 
D 4 HOH A 39 1057 1057 HOH HOH . 
D 4 HOH A 40 1058 1058 HOH HOH . 
D 4 HOH A 41 1059 1059 HOH HOH . 
D 4 HOH A 42 1060 1060 HOH HOH . 
D 4 HOH A 43 1061 1061 HOH HOH . 
D 4 HOH A 44 1062 1062 HOH HOH . 
D 4 HOH A 45 1063 1063 HOH HOH . 
D 4 HOH A 46 1064 1064 HOH HOH . 
D 4 HOH A 47 1065 1065 HOH HOH . 
D 4 HOH A 48 1066 1066 HOH HOH . 
D 4 HOH A 49 1067 1067 HOH HOH . 
D 4 HOH A 50 1068 1068 HOH HOH . 
D 4 HOH A 51 1069 1069 HOH HOH . 
D 4 HOH A 52 1070 1070 HOH HOH . 
D 4 HOH A 53 1071 1071 HOH HOH . 
D 4 HOH A 54 1072 1072 HOH HOH . 
D 4 HOH A 55 1073 1073 HOH HOH . 
D 4 HOH A 56 1074 1074 HOH HOH . 
D 4 HOH A 57 1075 1075 HOH HOH . 
D 4 HOH A 58 1076 1076 HOH HOH . 
D 4 HOH A 59 1077 1077 HOH HOH . 
D 4 HOH A 60 1078 1078 HOH HOH . 
D 4 HOH A 61 1079 1079 HOH HOH . 
D 4 HOH A 62 1080 1080 HOH HOH . 
D 4 HOH A 63 1081 1081 HOH HOH . 
D 4 HOH A 64 1082 1082 HOH HOH . 
D 4 HOH A 65 1083 1083 HOH HOH . 
D 4 HOH A 66 1084 1084 HOH HOH . 
D 4 HOH A 67 1085 1085 HOH HOH . 
D 4 HOH A 68 1086 1086 HOH HOH . 
D 4 HOH A 69 1087 1087 HOH HOH . 
D 4 HOH A 70 1088 1088 HOH HOH . 
D 4 HOH A 71 1089 1089 HOH HOH . 
D 4 HOH A 72 1090 1090 HOH HOH . 
D 4 HOH A 73 1091 1091 HOH HOH . 
D 4 HOH A 74 1092 1092 HOH HOH . 
D 4 HOH A 75 1093 1093 HOH HOH . 
D 4 HOH A 76 1094 1094 HOH HOH . 
D 4 HOH A 77 1095 1095 HOH HOH . 
D 4 HOH A 78 1096 1096 HOH HOH . 
D 4 HOH A 79 1097 1097 HOH HOH . 
D 4 HOH A 80 1098 1098 HOH HOH . 
D 4 HOH A 81 1099 1099 HOH HOH . 
D 4 HOH A 82 1100 1100 HOH HOH . 
D 4 HOH A 83 1101 1101 HOH HOH . 
D 4 HOH A 84 1102 1102 HOH HOH . 
D 4 HOH A 85 1103 1103 HOH HOH . 
D 4 HOH A 86 1104 1104 HOH HOH . 
D 4 HOH A 87 1105 1105 HOH HOH . 
D 4 HOH A 88 1106 1106 HOH HOH . 
D 4 HOH A 89 1107 1107 HOH HOH . 
D 4 HOH A 90 1108 1108 HOH HOH . 
D 4 HOH A 91 1109 1109 HOH HOH . 
D 4 HOH A 92 1110 1110 HOH HOH . 
D 4 HOH A 93 1111 1111 HOH HOH . 
D 4 HOH A 94 1112 1112 HOH HOH . 
D 4 HOH A 95 1113 1113 HOH HOH . 
D 4 HOH A 96 1114 1114 HOH HOH . 
D 4 HOH A 97 1115 1115 HOH HOH . 
D 4 HOH A 98 1116 1116 HOH HOH . 
D 4 HOH A 99 1117 1117 HOH HOH . 
D 4 HOH A 100 1118 1118 HOH HOH . 
D 4 HOH A 101 1119 1119 HOH HOH . 
D 4 HOH A 102 1120 1120 HOH HOH . 
D 4 HOH A 103 1121 1121 HOH HOH . 
D 4 HOH A 104 1122 1122 HOH HOH . 
D 4 HOH A 105 1123 1123 HOH HOH . 
D 4 HOH A 106 1124 1124 HOH HOH . 
D 4 HOH A 107 1125 1125 HOH HOH . 
D 4 HOH A 108 1126 1126 HOH HOH . 
D 4 HOH A 109 1127 1127 HOH HOH . 
D 4 HOH A 110 1128 1128 HOH HOH . 
D 4 HOH A 111 1129 1129 HOH HOH . 
D 4 HOH A 112 1130 1130 HOH HOH . 
D 4 HOH A 113 1131 1131 HOH HOH . 
D 4 HOH A 114 1132 1132 HOH HOH . 
D 4 HOH A 115 1133 1133 HOH HOH . 
D 4 HOH A 116 1134 1134 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 PRF . . . C 3 25.929 29.569 23.886 1 31.53 ? N1 PRF 900 A 1 
HETATM 2 C C2 PRF . . . C 3 25.325 30.738 23.487 1 34.73 ? C2 PRF 900 A 1 
HETATM 3 N N3 PRF . . . C 3 25.043 30.98 22.239 1 36.55 ? N3 PRF 900 A 1 
HETATM 4 C C4 PRF . . . C 3 25.316 30.095 21.239 1 31.47 ? C4 PRF 900 A 1 
HETATM 5 C C5 PRF . . . C 3 25.929 28.873 21.524 1 32.42 ? C5 PRF 900 A 1 
HETATM 6 C C6 PRF . . . C 3 26.266 28.589 22.985 1 32.7 ? C6 PRF 900 A 1 
HETATM 7 O O6 PRF . . . C 3 26.806 27.539 23.297 1 28.96 ? O6 PRF 900 A 1 
HETATM 8 C C7 PRF . . . C 3 26.085 28.176 20.333 1 31.43 ? C7 PRF 900 A 1 
HETATM 9 C C10 PRF . . . C 3 26.701 26.787 20.156 1 32.83 ? C10 PRF 900 A 1 
HETATM 10 N N11 PRF . . . C 3 27.039 26.558 18.744 1 35.37 ? N11 PRF 900 A 1 
HETATM 11 C C8 PRF . . . C 3 25.559 29.018 19.349 1 32.53 ? C8 PRF 900 A 1 
HETATM 12 N N9 PRF . . . C 3 25.11 30.154 19.924 1 31.28 ? N9 PRF 900 A 1 
HETATM 13 N N2 PRF . . . C 3 25.03 31.636 24.424 1 34.28 ? N2 PRF 900 A 1 
#
_model_server_stats.io_time_ms              66 
_model_server_stats.parse_time_ms           17 
_model_server_stats.create_model_time_ms    16 
_model_server_stats.query_time_ms           291 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           13 
#