data_1P1I # _model_server_result.job_id CjQX9Gxz2jMDKb1O0QEGXQ _model_server_result.datetime_utc '2024-12-05 13:50:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1p1i # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":660}' # _entry.id 1P1I # _exptl.entry_id 1P1I _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 663.425 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description NICOTINAMIDE-ADENINE-DINUCLEOTIDE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 126.53 _cell.angle_gamma 90 _cell.entry_id 1P1I _cell.length_a 152.384 _cell.length_b 97.344 _cell.length_c 122.887 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1P1I _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C21 H27 N7 O14 P2' _chem_comp.formula_weight 663.425 _chem_comp.id NAD _chem_comp.mon_nstd_flag . _chem_comp.name NICOTINAMIDE-ADENINE-DINUCLEOTIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAD doub 237 n n PA O2A NAD sing 238 n n PA O5B NAD sing 239 n n PA O3 NAD sing 240 n n O2A HOA2 NAD sing 241 n n O5B C5B NAD sing 242 n n C5B C4B NAD sing 243 n n C5B H51A NAD sing 244 n n C5B H52A NAD sing 245 n n C4B O4B NAD sing 246 n n C4B C3B NAD sing 247 n n C4B H4B NAD sing 248 n n O4B C1B NAD sing 249 n n C3B O3B NAD sing 250 n n C3B C2B NAD sing 251 n n C3B H3B NAD sing 252 n n O3B HO3A NAD sing 253 n n C2B O2B NAD sing 254 n n C2B C1B NAD sing 255 n n C2B H2B NAD sing 256 n n O2B HO2A NAD sing 257 n n C1B N9A NAD sing 258 n n C1B H1B NAD sing 259 n n N9A C8A NAD sing 260 n y N9A C4A NAD sing 261 n y C8A N7A NAD doub 262 n y C8A H8A NAD sing 263 n n N7A C5A NAD sing 264 n y C5A C6A NAD sing 265 n y C5A C4A NAD doub 266 n y C6A N6A NAD sing 267 n n C6A N1A NAD doub 268 n y N6A H61A NAD sing 269 n n N6A H62A NAD sing 270 n n N1A C2A NAD sing 271 n y C2A N3A NAD doub 272 n y C2A H2A NAD sing 273 n n N3A C4A NAD sing 274 n y O3 PN NAD sing 275 n n PN O1N NAD doub 276 n n PN O2N NAD sing 277 n n PN O5D NAD sing 278 n n O5D C5D NAD sing 279 n n C5D C4D NAD sing 280 n n C5D H51N NAD sing 281 n n C5D H52N NAD sing 282 n n C4D O4D NAD sing 283 n n C4D C3D NAD sing 284 n n C4D H4D NAD sing 285 n n O4D C1D NAD sing 286 n n C3D O3D NAD sing 287 n n C3D C2D NAD sing 288 n n C3D H3D NAD sing 289 n n O3D HO3N NAD sing 290 n n C2D O2D NAD sing 291 n n C2D C1D NAD sing 292 n n C2D H2D NAD sing 293 n n O2D HO2N NAD sing 294 n n C1D N1N NAD sing 295 n n C1D H1D NAD sing 296 n n N1N C2N NAD sing 297 n y N1N C6N NAD doub 298 n y C2N C3N NAD doub 299 n y C2N H2N NAD sing 300 n n C3N C7N NAD sing 301 n n C3N C4N NAD sing 302 n y C7N O7N NAD doub 303 n n C7N N7N NAD sing 304 n n N7N H71N NAD sing 305 n n N7N H72N NAD sing 306 n n C4N C5N NAD doub 307 n y C4N H4N NAD sing 308 n n C5N C6N NAD sing 309 n y C5N H5N NAD sing 310 n n C6N H6N NAD sing 311 n n # _atom_sites.entry_id 1P1I _atom_sites.fract_transf_matrix[1][1] 0.006562 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004861 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010273 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010127 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NAD A 1 650 650 NAD NAD . D 2 NAD B 1 660 660 NAD NAD . E 3 HOH A 1 651 1 HOH WAT . E 3 HOH A 2 652 2 HOH WAT . E 3 HOH A 3 653 3 HOH WAT . E 3 HOH A 4 654 4 HOH WAT . E 3 HOH A 5 655 8 HOH WAT . E 3 HOH A 6 656 9 HOH WAT . E 3 HOH A 7 657 11 HOH WAT . E 3 HOH A 8 658 12 HOH WAT . E 3 HOH A 9 659 16 HOH WAT . E 3 HOH A 10 660 20 HOH WAT . E 3 HOH A 11 661 21 HOH WAT . E 3 HOH A 12 662 22 HOH WAT . E 3 HOH A 13 663 24 HOH WAT . E 3 HOH A 14 664 26 HOH WAT . E 3 HOH A 15 665 27 HOH WAT . E 3 HOH A 16 666 28 HOH WAT . E 3 HOH A 17 667 29 HOH WAT . E 3 HOH A 18 668 30 HOH WAT . E 3 HOH A 19 669 31 HOH WAT . E 3 HOH A 20 670 32 HOH WAT . E 3 HOH A 21 671 33 HOH WAT . E 3 HOH A 22 672 34 HOH WAT . E 3 HOH A 23 673 35 HOH WAT . E 3 HOH A 24 674 36 HOH WAT . E 3 HOH A 25 675 37 HOH WAT . E 3 HOH A 26 676 38 HOH WAT . E 3 HOH A 27 677 39 HOH WAT . E 3 HOH A 28 678 41 HOH WAT . E 3 HOH A 29 679 42 HOH WAT . E 3 HOH A 30 680 43 HOH WAT . E 3 HOH A 31 681 44 HOH WAT . E 3 HOH A 32 682 45 HOH WAT . E 3 HOH A 33 683 46 HOH WAT . E 3 HOH A 34 684 47 HOH WAT . E 3 HOH A 35 685 48 HOH WAT . E 3 HOH A 36 686 50 HOH WAT . E 3 HOH A 37 687 51 HOH WAT . E 3 HOH A 38 688 52 HOH WAT . E 3 HOH A 39 689 53 HOH WAT . E 3 HOH A 40 690 55 HOH WAT . E 3 HOH A 41 691 56 HOH WAT . E 3 HOH A 42 692 58 HOH WAT . E 3 HOH A 43 693 59 HOH WAT . E 3 HOH A 44 694 60 HOH WAT . E 3 HOH A 45 695 61 HOH WAT . E 3 HOH A 46 696 62 HOH WAT . E 3 HOH A 47 697 63 HOH WAT . E 3 HOH A 48 698 66 HOH WAT . E 3 HOH A 49 699 71 HOH WAT . E 3 HOH A 50 700 74 HOH WAT . E 3 HOH A 51 701 75 HOH WAT . E 3 HOH A 52 702 79 HOH WAT . E 3 HOH A 53 703 80 HOH WAT . E 3 HOH A 54 704 83 HOH WAT . E 3 HOH A 55 705 84 HOH WAT . E 3 HOH A 56 706 86 HOH WAT . E 3 HOH A 57 707 87 HOH WAT . E 3 HOH A 58 708 88 HOH WAT . E 3 HOH A 59 709 90 HOH WAT . E 3 HOH A 60 710 91 HOH WAT . E 3 HOH A 61 711 92 HOH WAT . E 3 HOH A 62 712 93 HOH WAT . E 3 HOH A 63 713 94 HOH WAT . E 3 HOH A 64 714 95 HOH WAT . E 3 HOH A 65 715 102 HOH WAT . E 3 HOH A 66 716 108 HOH WAT . E 3 HOH A 67 717 109 HOH WAT . E 3 HOH A 68 718 110 HOH WAT . E 3 HOH A 69 719 112 HOH WAT . E 3 HOH A 70 720 113 HOH WAT . E 3 HOH A 71 721 114 HOH WAT . E 3 HOH A 72 722 115 HOH WAT . E 3 HOH A 73 723 116 HOH WAT . E 3 HOH A 74 724 126 HOH WAT . E 3 HOH A 75 725 127 HOH WAT . E 3 HOH A 76 726 128 HOH WAT . E 3 HOH A 77 727 129 HOH WAT . E 3 HOH A 78 728 130 HOH WAT . E 3 HOH A 79 729 131 HOH WAT . E 3 HOH A 80 730 132 HOH WAT . E 3 HOH A 81 731 133 HOH WAT . E 3 HOH A 82 732 134 HOH WAT . E 3 HOH A 83 733 135 HOH WAT . E 3 HOH A 84 734 136 HOH WAT . E 3 HOH A 85 735 137 HOH WAT . E 3 HOH A 86 736 138 HOH WAT . E 3 HOH A 87 737 139 HOH WAT . E 3 HOH A 88 738 140 HOH WAT . E 3 HOH A 89 739 141 HOH WAT . E 3 HOH A 90 740 152 HOH WAT . F 3 HOH B 1 661 5 HOH WAT . F 3 HOH B 2 662 6 HOH WAT . F 3 HOH B 3 663 7 HOH WAT . F 3 HOH B 4 664 10 HOH WAT . F 3 HOH B 5 665 13 HOH WAT . F 3 HOH B 6 666 14 HOH WAT . F 3 HOH B 7 667 15 HOH WAT . F 3 HOH B 8 668 17 HOH WAT . F 3 HOH B 9 669 18 HOH WAT . F 3 HOH B 10 670 19 HOH WAT . F 3 HOH B 11 671 23 HOH WAT . F 3 HOH B 12 672 25 HOH WAT . F 3 HOH B 13 673 40 HOH WAT . F 3 HOH B 14 674 49 HOH WAT . F 3 HOH B 15 675 54 HOH WAT . F 3 HOH B 16 676 57 HOH WAT . F 3 HOH B 17 677 64 HOH WAT . F 3 HOH B 18 678 65 HOH WAT . F 3 HOH B 19 679 67 HOH WAT . F 3 HOH B 20 680 68 HOH WAT . F 3 HOH B 21 681 69 HOH WAT . F 3 HOH B 22 682 70 HOH WAT . F 3 HOH B 23 683 72 HOH WAT . F 3 HOH B 24 684 73 HOH WAT . F 3 HOH B 25 685 76 HOH WAT . F 3 HOH B 26 686 77 HOH WAT . F 3 HOH B 27 687 78 HOH WAT . F 3 HOH B 28 688 81 HOH WAT . F 3 HOH B 29 689 85 HOH WAT . F 3 HOH B 30 690 89 HOH WAT . F 3 HOH B 31 691 96 HOH WAT . F 3 HOH B 32 692 97 HOH WAT . F 3 HOH B 33 693 98 HOH WAT . F 3 HOH B 34 694 99 HOH WAT . F 3 HOH B 35 695 100 HOH WAT . F 3 HOH B 36 696 101 HOH WAT . F 3 HOH B 37 697 103 HOH WAT . F 3 HOH B 38 698 104 HOH WAT . F 3 HOH B 39 699 105 HOH WAT . F 3 HOH B 40 700 106 HOH WAT . F 3 HOH B 41 701 107 HOH WAT . F 3 HOH B 42 702 111 HOH WAT . F 3 HOH B 43 703 117 HOH WAT . F 3 HOH B 44 704 118 HOH WAT . F 3 HOH B 45 705 119 HOH WAT . F 3 HOH B 46 706 120 HOH WAT . F 3 HOH B 47 707 121 HOH WAT . F 3 HOH B 48 708 122 HOH WAT . F 3 HOH B 49 709 123 HOH WAT . F 3 HOH B 50 710 124 HOH WAT . F 3 HOH B 51 711 125 HOH WAT . F 3 HOH B 52 712 142 HOH WAT . F 3 HOH B 53 713 143 HOH WAT . F 3 HOH B 54 714 144 HOH WAT . F 3 HOH B 55 715 145 HOH WAT . F 3 HOH B 56 716 146 HOH WAT . F 3 HOH B 57 717 147 HOH WAT . F 3 HOH B 58 718 148 HOH WAT . F 3 HOH B 59 719 149 HOH WAT . F 3 HOH B 60 720 150 HOH WAT . F 3 HOH B 61 721 151 HOH WAT . F 3 HOH B 62 722 153 HOH WAT . F 3 HOH B 63 723 154 HOH WAT . F 3 HOH B 64 724 155 HOH WAT . F 3 HOH B 65 725 156 HOH WAT . F 3 HOH B 66 726 157 HOH WAT . F 3 HOH B 67 727 158 HOH WAT . F 3 HOH B 68 728 159 HOH WAT . F 3 HOH B 69 729 160 HOH WAT . F 3 HOH B 70 730 161 HOH WAT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAD . . . D 2 18.436 6.881 11.174 1 57.05 ? PA NAD 660 B 1 HETATM 2 O O1A NAD . . . D 2 18.069 5.795 10.244 1 57.39 ? O1A NAD 660 B 1 HETATM 3 O O2A NAD . . . D 2 19.45 7.819 10.612 1 53.5 ? O2A NAD 660 B 1 HETATM 4 O O5B NAD . . . D 2 19.104 6.345 12.497 1 56.26 ? O5B NAD 660 B 1 HETATM 5 C C5B NAD . . . D 2 18.985 4.97 12.888 1 51.82 ? C5B NAD 660 B 1 HETATM 6 C C4B NAD . . . D 2 20.36 4.476 13.203 1 49.04 ? C4B NAD 660 B 1 HETATM 7 O O4B NAD . . . D 2 20.1 3.269 13.905 1 50.38 ? O4B NAD 660 B 1 HETATM 8 C C3B NAD . . . D 2 21.219 4.07 11.996 1 46.54 ? C3B NAD 660 B 1 HETATM 9 O O3B NAD . . . D 2 22.547 4.611 12.09 1 43.38 ? O3B NAD 660 B 1 HETATM 10 C C2B NAD . . . D 2 21.169 2.539 12.051 1 47.83 ? C2B NAD 660 B 1 HETATM 11 O O2B NAD . . . D 2 22.424 1.968 11.633 1 49.52 ? O2B NAD 660 B 1 HETATM 12 C C1B NAD . . . D 2 20.977 2.307 13.534 1 50.32 ? C1B NAD 660 B 1 HETATM 13 N N9A NAD . . . D 2 20.311 1.065 13.868 1 51.67 ? N9A NAD 660 B 1 HETATM 14 C C8A NAD . . . D 2 19.214 0.456 13.278 1 52.41 ? C8A NAD 660 B 1 HETATM 15 N N7A NAD . . . D 2 18.792 -0.675 13.909 1 53.7 ? N7A NAD 660 B 1 HETATM 16 C C5A NAD . . . D 2 19.69 -0.773 14.973 1 53.56 ? C5A NAD 660 B 1 HETATM 17 C C6A NAD . . . D 2 19.897 -1.805 15.994 1 53.08 ? C6A NAD 660 B 1 HETATM 18 N N6A NAD . . . D 2 19.255 -2.974 15.985 1 52.39 ? N6A NAD 660 B 1 HETATM 19 N N1A NAD . . . D 2 20.859 -1.533 16.972 1 52.74 ? N1A NAD 660 B 1 HETATM 20 C C2A NAD . . . D 2 21.586 -0.327 16.925 1 53.39 ? C2A NAD 660 B 1 HETATM 21 N N3A NAD . . . D 2 21.532 0.618 15.98 1 52.68 ? N3A NAD 660 B 1 HETATM 22 C C4A NAD . . . D 2 20.582 0.342 15.018 1 52.92 ? C4A NAD 660 B 1 HETATM 23 O O3 NAD . . . D 2 17.15 7.566 11.717 1 56.88 ? O3 NAD 660 B 1 HETATM 24 P PN NAD . . . D 2 16.846 8.753 12.746 1 57.67 ? PN NAD 660 B 1 HETATM 25 O O1N NAD . . . D 2 16.373 9.875 11.876 1 58.44 ? O1N NAD 660 B 1 HETATM 26 O O2N NAD . . . D 2 18.076 9.041 13.524 1 56.06 ? O2N NAD 660 B 1 HETATM 27 O O5D NAD . . . D 2 15.585 8.204 13.582 1 59.12 ? O5D NAD 660 B 1 HETATM 28 C C5D NAD . . . D 2 15.663 6.897 14.207 1 64.03 ? C5D NAD 660 B 1 HETATM 29 C C4D NAD . . . D 2 14.28 6.411 14.621 1 67.32 ? C4D NAD 660 B 1 HETATM 30 O O4D NAD . . . D 2 13.644 7.357 15.536 1 69.07 ? O4D NAD 660 B 1 HETATM 31 C C3D NAD . . . D 2 13.322 6.133 13.476 1 69.23 ? C3D NAD 660 B 1 HETATM 32 O O3D NAD . . . D 2 13.43 4.822 12.891 1 69.16 ? O3D NAD 660 B 1 HETATM 33 C C2D NAD . . . D 2 11.956 6.391 14.153 1 70.25 ? C2D NAD 660 B 1 HETATM 34 O O2D NAD . . . D 2 11.503 5.189 14.787 1 71.59 ? O2D NAD 660 B 1 HETATM 35 C C1D NAD . . . D 2 12.281 7.48 15.161 1 71.59 ? C1D NAD 660 B 1 HETATM 36 N N1N NAD . . . D 2 11.85 8.888 14.812 1 76.1 ? N1N NAD 660 B 1 HETATM 37 C C2N NAD . . . D 2 12.763 9.756 14.118 1 78.28 ? C2N NAD 660 B 1 HETATM 38 C C3N NAD . . . D 2 12.44 11.124 13.904 1 79.22 ? C3N NAD 660 B 1 HETATM 39 C C7N NAD . . . D 2 13.372 12.036 13.084 1 79.12 ? C7N NAD 660 B 1 HETATM 40 O O7N NAD . . . D 2 13.081 13.213 12.939 1 81.21 ? O7N NAD 660 B 1 HETATM 41 N N7N NAD . . . D 2 14.468 11.556 12.475 1 78.01 ? N7N NAD 660 B 1 HETATM 42 C C4N NAD . . . D 2 11.137 11.655 14.417 1 79.72 ? C4N NAD 660 B 1 HETATM 43 C C5N NAD . . . D 2 10.208 10.753 15.078 1 79.62 ? C5N NAD 660 B 1 HETATM 44 C C6N NAD . . . D 2 10.568 9.407 15.266 1 78.26 ? C6N NAD 660 B 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 36 _model_server_stats.query_time_ms 260 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 44 #