data_1P1K # _model_server_result.job_id '_oajNCVrZvISGfsN_MbMPw' _model_server_result.datetime_utc '2024-11-30 06:16:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1p1k # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":650}' # _entry.id 1P1K # _exptl.entry_id 1P1K _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 665.441 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 126.15 _cell.angle_gamma 90 _cell.entry_id 1P1K _cell.length_a 151.978 _cell.length_b 97.613 _cell.length_c 121.717 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1P1K _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C21 H29 N7 O14 P2' _chem_comp.formula_weight 665.441 _chem_comp.id NAI _chem_comp.mon_nstd_flag . _chem_comp.name '1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms NADH # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAI doub 237 n n PA O2A NAI sing 238 n n PA O5B NAI sing 239 n n PA O3 NAI sing 240 n n O2A HOA2 NAI sing 241 n n O5B C5B NAI sing 242 n n C5B C4B NAI sing 243 n n C5B H51A NAI sing 244 n n C5B H52A NAI sing 245 n n C4B O4B NAI sing 246 n n C4B C3B NAI sing 247 n n C4B H4B NAI sing 248 n n O4B C1B NAI sing 249 n n C3B O3B NAI sing 250 n n C3B C2B NAI sing 251 n n C3B H3B NAI sing 252 n n O3B HO3A NAI sing 253 n n C2B O2B NAI sing 254 n n C2B C1B NAI sing 255 n n C2B H2B NAI sing 256 n n O2B HO2A NAI sing 257 n n C1B N9A NAI sing 258 n n C1B H1B NAI sing 259 n n N9A C8A NAI sing 260 n y N9A C4A NAI sing 261 n y C8A N7A NAI doub 262 n y C8A H8A NAI sing 263 n n N7A C5A NAI sing 264 n y C5A C6A NAI sing 265 n y C5A C4A NAI doub 266 n y C6A N6A NAI sing 267 n n C6A N1A NAI doub 268 n y N6A H61A NAI sing 269 n n N6A H62A NAI sing 270 n n N1A C2A NAI sing 271 n y C2A N3A NAI doub 272 n y C2A H2A NAI sing 273 n n N3A C4A NAI sing 274 n y O3 PN NAI sing 275 n n PN O1N NAI sing 276 n n PN O2N NAI doub 277 n n PN O5D NAI sing 278 n n O1N HO1N NAI sing 279 n n O5D C5D NAI sing 280 n n C5D C4D NAI sing 281 n n C5D H51N NAI sing 282 n n C5D H52N NAI sing 283 n n C4D O4D NAI sing 284 n n C4D C3D NAI sing 285 n n C4D H4D NAI sing 286 n n O4D C1D NAI sing 287 n n C3D O3D NAI sing 288 n n C3D C2D NAI sing 289 n n C3D H3D NAI sing 290 n n O3D HO3N NAI sing 291 n n C2D O2D NAI sing 292 n n C2D C1D NAI sing 293 n n C2D H2D NAI sing 294 n n O2D HO2N NAI sing 295 n n C1D N1N NAI sing 296 n n C1D H1D NAI sing 297 n n N1N C2N NAI sing 298 n n N1N C6N NAI sing 299 n n C2N C3N NAI doub 300 n n C2N H2N NAI sing 301 n n C3N C7N NAI sing 302 n n C3N C4N NAI sing 303 n n C7N O7N NAI doub 304 n n C7N N7N NAI sing 305 n n N7N H71N NAI sing 306 n n N7N H72N NAI sing 307 n n C4N C5N NAI sing 308 n n C4N H4N NAI sing 309 n n C4N H42N NAI sing 310 n n C5N C6N NAI doub 311 n n C5N H5N NAI sing 312 n n C6N H6N NAI sing 313 n n # _atom_sites.entry_id 1P1K _atom_sites.fract_transf_matrix[1][1] 0.00658 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004807 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010245 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010175 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NAI A 1 650 650 NAI NAI . D 2 NAI B 1 660 660 NAI NAI . E 3 HOH A 1 651 1 HOH WAT . E 3 HOH A 2 652 3 HOH WAT . E 3 HOH A 3 653 4 HOH WAT . E 3 HOH A 4 654 5 HOH WAT . E 3 HOH A 5 655 6 HOH WAT . E 3 HOH A 6 656 7 HOH WAT . E 3 HOH A 7 657 8 HOH WAT . E 3 HOH A 8 658 9 HOH WAT . E 3 HOH A 9 659 10 HOH WAT . E 3 HOH A 10 660 11 HOH WAT . E 3 HOH A 11 661 12 HOH WAT . E 3 HOH A 12 662 13 HOH WAT . E 3 HOH A 13 663 14 HOH WAT . E 3 HOH A 14 664 15 HOH WAT . E 3 HOH A 15 665 16 HOH WAT . E 3 HOH A 16 666 17 HOH WAT . E 3 HOH A 17 667 18 HOH WAT . E 3 HOH A 18 668 19 HOH WAT . E 3 HOH A 19 669 24 HOH WAT . E 3 HOH A 20 670 26 HOH WAT . E 3 HOH A 21 671 28 HOH WAT . E 3 HOH A 22 672 29 HOH WAT . E 3 HOH A 23 673 30 HOH WAT . E 3 HOH A 24 674 31 HOH WAT . E 3 HOH A 25 675 33 HOH WAT . E 3 HOH A 26 676 34 HOH WAT . E 3 HOH A 27 677 35 HOH WAT . E 3 HOH A 28 678 44 HOH WAT . E 3 HOH A 29 679 54 HOH WAT . E 3 HOH A 30 680 55 HOH WAT . E 3 HOH A 31 681 56 HOH WAT . E 3 HOH A 32 682 57 HOH WAT . E 3 HOH A 33 683 58 HOH WAT . E 3 HOH A 34 684 59 HOH WAT . E 3 HOH A 35 685 60 HOH WAT . E 3 HOH A 36 686 61 HOH WAT . E 3 HOH A 37 687 62 HOH WAT . E 3 HOH A 38 688 63 HOH WAT . E 3 HOH A 39 689 64 HOH WAT . E 3 HOH A 40 690 65 HOH WAT . E 3 HOH A 41 691 66 HOH WAT . E 3 HOH A 42 692 67 HOH WAT . E 3 HOH A 43 693 68 HOH WAT . E 3 HOH A 44 694 69 HOH WAT . E 3 HOH A 45 695 75 HOH WAT . E 3 HOH A 46 696 76 HOH WAT . E 3 HOH A 47 697 77 HOH WAT . E 3 HOH A 48 698 78 HOH WAT . E 3 HOH A 49 699 79 HOH WAT . E 3 HOH A 50 700 81 HOH WAT . E 3 HOH A 51 701 82 HOH WAT . E 3 HOH A 52 702 83 HOH WAT . E 3 HOH A 53 703 84 HOH WAT . E 3 HOH A 54 704 86 HOH WAT . E 3 HOH A 55 705 87 HOH WAT . E 3 HOH A 56 706 88 HOH WAT . E 3 HOH A 57 707 89 HOH WAT . E 3 HOH A 58 708 90 HOH WAT . E 3 HOH A 59 709 91 HOH WAT . E 3 HOH A 60 710 92 HOH WAT . E 3 HOH A 61 711 93 HOH WAT . E 3 HOH A 62 712 94 HOH WAT . E 3 HOH A 63 713 95 HOH WAT . E 3 HOH A 64 714 96 HOH WAT . E 3 HOH A 65 715 99 HOH WAT . E 3 HOH A 66 716 100 HOH WAT . E 3 HOH A 67 717 101 HOH WAT . E 3 HOH A 68 718 102 HOH WAT . E 3 HOH A 69 719 103 HOH WAT . E 3 HOH A 70 720 109 HOH WAT . E 3 HOH A 71 721 124 HOH WAT . E 3 HOH A 72 722 125 HOH WAT . E 3 HOH A 73 723 126 HOH WAT . E 3 HOH A 74 724 127 HOH WAT . E 3 HOH A 75 725 140 HOH WAT . E 3 HOH A 76 726 141 HOH WAT . E 3 HOH A 77 727 142 HOH WAT . E 3 HOH A 78 728 143 HOH WAT . E 3 HOH A 79 729 144 HOH WAT . E 3 HOH A 80 730 145 HOH WAT . E 3 HOH A 81 731 147 HOH WAT . E 3 HOH A 82 732 149 HOH WAT . E 3 HOH A 83 733 152 HOH WAT . E 3 HOH A 84 734 153 HOH WAT . E 3 HOH A 85 735 154 HOH WAT . E 3 HOH A 86 736 155 HOH WAT . E 3 HOH A 87 737 156 HOH WAT . E 3 HOH A 88 738 157 HOH WAT . E 3 HOH A 89 739 158 HOH WAT . E 3 HOH A 90 740 159 HOH WAT . E 3 HOH A 91 741 161 HOH WAT . E 3 HOH A 92 742 165 HOH WAT . E 3 HOH A 93 743 169 HOH WAT . E 3 HOH A 94 744 170 HOH WAT . E 3 HOH A 95 745 171 HOH WAT . E 3 HOH A 96 746 173 HOH WAT . E 3 HOH A 97 747 174 HOH WAT . E 3 HOH A 98 748 175 HOH WAT . E 3 HOH A 99 749 176 HOH WAT . F 3 HOH B 1 661 2 HOH WAT . F 3 HOH B 2 662 20 HOH WAT . F 3 HOH B 3 663 21 HOH WAT . F 3 HOH B 4 664 22 HOH WAT . F 3 HOH B 5 665 23 HOH WAT . F 3 HOH B 6 666 25 HOH WAT . F 3 HOH B 7 667 27 HOH WAT . F 3 HOH B 8 668 32 HOH WAT . F 3 HOH B 9 669 36 HOH WAT . F 3 HOH B 10 670 37 HOH WAT . F 3 HOH B 11 671 38 HOH WAT . F 3 HOH B 12 672 39 HOH WAT . F 3 HOH B 13 673 40 HOH WAT . F 3 HOH B 14 674 41 HOH WAT . F 3 HOH B 15 675 42 HOH WAT . F 3 HOH B 16 676 43 HOH WAT . F 3 HOH B 17 677 45 HOH WAT . F 3 HOH B 18 678 46 HOH WAT . F 3 HOH B 19 679 47 HOH WAT . F 3 HOH B 20 680 48 HOH WAT . F 3 HOH B 21 681 49 HOH WAT . F 3 HOH B 22 682 50 HOH WAT . F 3 HOH B 23 683 51 HOH WAT . F 3 HOH B 24 684 52 HOH WAT . F 3 HOH B 25 685 70 HOH WAT . F 3 HOH B 26 686 71 HOH WAT . F 3 HOH B 27 687 72 HOH WAT . F 3 HOH B 28 688 73 HOH WAT . F 3 HOH B 29 689 74 HOH WAT . F 3 HOH B 30 690 80 HOH WAT . F 3 HOH B 31 691 97 HOH WAT . F 3 HOH B 32 692 98 HOH WAT . F 3 HOH B 33 693 104 HOH WAT . F 3 HOH B 34 694 105 HOH WAT . F 3 HOH B 35 695 106 HOH WAT . F 3 HOH B 36 696 107 HOH WAT . F 3 HOH B 37 697 108 HOH WAT . F 3 HOH B 38 698 110 HOH WAT . F 3 HOH B 39 699 111 HOH WAT . F 3 HOH B 40 700 112 HOH WAT . F 3 HOH B 41 701 113 HOH WAT . F 3 HOH B 42 702 114 HOH WAT . F 3 HOH B 43 703 115 HOH WAT . F 3 HOH B 44 704 116 HOH WAT . F 3 HOH B 45 705 117 HOH WAT . F 3 HOH B 46 706 118 HOH WAT . F 3 HOH B 47 707 119 HOH WAT . F 3 HOH B 48 708 120 HOH WAT . F 3 HOH B 49 709 121 HOH WAT . F 3 HOH B 50 710 122 HOH WAT . F 3 HOH B 51 711 123 HOH WAT . F 3 HOH B 52 712 128 HOH WAT . F 3 HOH B 53 713 129 HOH WAT . F 3 HOH B 54 714 130 HOH WAT . F 3 HOH B 55 715 131 HOH WAT . F 3 HOH B 56 716 132 HOH WAT . F 3 HOH B 57 717 133 HOH WAT . F 3 HOH B 58 718 134 HOH WAT . F 3 HOH B 59 719 135 HOH WAT . F 3 HOH B 60 720 136 HOH WAT . F 3 HOH B 61 721 137 HOH WAT . F 3 HOH B 62 722 138 HOH WAT . F 3 HOH B 63 723 139 HOH WAT . F 3 HOH B 64 724 146 HOH WAT . F 3 HOH B 65 725 148 HOH WAT . F 3 HOH B 66 726 150 HOH WAT . F 3 HOH B 67 727 151 HOH WAT . F 3 HOH B 68 728 160 HOH WAT . F 3 HOH B 69 729 162 HOH WAT . F 3 HOH B 70 730 163 HOH WAT . F 3 HOH B 71 731 164 HOH WAT . F 3 HOH B 72 732 166 HOH WAT . F 3 HOH B 73 733 167 HOH WAT . F 3 HOH B 74 734 168 HOH WAT . F 3 HOH B 75 735 172 HOH WAT . F 3 HOH B 76 736 177 HOH WAT . F 3 HOH B 77 737 178 HOH WAT . F 3 HOH B 78 738 179 HOH WAT . F 3 HOH B 79 739 180 HOH WAT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAI . . . C 2 -20.462 44.44 5.716 1 34.28 ? PA NAI 650 A 1 HETATM 2 O O1A NAI . . . C 2 -19.789 45.512 4.992 1 34.41 ? O1A NAI 650 A 1 HETATM 3 O O2A NAI . . . C 2 -21.169 43.486 4.847 1 33.9 ? O2A NAI 650 A 1 HETATM 4 O O5B NAI . . . C 2 -21.59 44.954 6.696 1 34.95 ? O5B NAI 650 A 1 HETATM 5 C C5B NAI . . . C 2 -21.473 46.219 7.392 1 35.3 ? C5B NAI 650 A 1 HETATM 6 C C4B NAI . . . C 2 -22.822 46.876 7.402 1 35.28 ? C4B NAI 650 A 1 HETATM 7 O O4B NAI . . . C 2 -22.659 48.064 8.207 1 34.77 ? O4B NAI 650 A 1 HETATM 8 C C3B NAI . . . C 2 -23.283 47.404 6.018 1 35.73 ? C3B NAI 650 A 1 HETATM 9 O O3B NAI . . . C 2 -24.621 46.949 5.724 1 35.1 ? O3B NAI 650 A 1 HETATM 10 C C2B NAI . . . C 2 -23.127 48.957 6.155 1 34.83 ? C2B NAI 650 A 1 HETATM 11 O O2B NAI . . . C 2 -24.152 49.674 5.391 1 36.21 ? O2B NAI 650 A 1 HETATM 12 C C1B NAI . . . C 2 -23.374 49.115 7.658 1 31.99 ? C1B NAI 650 A 1 HETATM 13 N N9A NAI . . . C 2 -22.818 50.352 8.226 1 28.11 ? N9A NAI 650 A 1 HETATM 14 C C8A NAI . . . C 2 -21.611 51.002 7.969 1 28.07 ? C8A NAI 650 A 1 HETATM 15 N N7A NAI . . . C 2 -21.405 52.119 8.721 1 28.34 ? N7A NAI 650 A 1 HETATM 16 C C5A NAI . . . C 2 -22.556 52.143 9.522 1 26.27 ? C5A NAI 650 A 1 HETATM 17 C C6A NAI . . . C 2 -23.022 53.075 10.551 1 25.22 ? C6A NAI 650 A 1 HETATM 18 N N6A NAI . . . C 2 -22.354 54.17 10.916 1 26.87 ? N6A NAI 650 A 1 HETATM 19 N N1A NAI . . . C 2 -24.23 52.794 11.142 1 25.15 ? N1A NAI 650 A 1 HETATM 20 C C2A NAI . . . C 2 -24.941 51.638 10.761 1 26.51 ? C2A NAI 650 A 1 HETATM 21 N N3A NAI . . . C 2 -24.599 50.75 9.833 1 25.04 ? N3A NAI 650 A 1 HETATM 22 C C4A NAI . . . C 2 -23.418 51.05 9.239 1 25.1 ? C4A NAI 650 A 1 HETATM 23 O O3 NAI . . . C 2 -19.409 43.748 6.654 1 36.39 ? O3 NAI 650 A 1 HETATM 24 P PN NAI . . . C 2 -19.388 42.459 7.638 1 36.2 ? PN NAI 650 A 1 HETATM 25 O O1N NAI . . . C 2 -18.761 41.39 6.78 1 35.93 ? O1N NAI 650 A 1 HETATM 26 O O2N NAI . . . C 2 -20.741 42.129 8.153 1 31.04 ? O2N NAI 650 A 1 HETATM 27 O O5D NAI . . . C 2 -18.321 42.905 8.753 1 40.13 ? O5D NAI 650 A 1 HETATM 28 C C5D NAI . . . C 2 -18.728 43.831 9.779 1 47.09 ? C5D NAI 650 A 1 HETATM 29 C C4D NAI . . . C 2 -17.522 44.206 10.625 1 52.38 ? C4D NAI 650 A 1 HETATM 30 O O4D NAI . . . C 2 -17.017 43.031 11.326 1 55.21 ? O4D NAI 650 A 1 HETATM 31 C C3D NAI . . . C 2 -16.378 44.907 9.896 1 54.62 ? C3D NAI 650 A 1 HETATM 32 O O3D NAI . . . C 2 -15.88 46.088 10.562 1 53.06 ? O3D NAI 650 A 1 HETATM 33 C C2D NAI . . . C 2 -15.325 43.773 9.823 1 57.56 ? C2D NAI 650 A 1 HETATM 34 O O2D NAI . . . C 2 -13.99 44.301 9.836 1 59.89 ? O2D NAI 650 A 1 HETATM 35 C C1D NAI . . . C 2 -15.634 42.907 11.048 1 59.78 ? C1D NAI 650 A 1 HETATM 36 N N1N NAI . . . C 2 -15.264 41.466 10.861 1 65.43 ? N1N NAI 650 A 1 HETATM 37 C C2N NAI . . . C 2 -16.01 40.729 9.899 1 67.04 ? C2N NAI 650 A 1 HETATM 38 C C3N NAI . . . C 2 -15.72 39.393 9.644 1 68.46 ? C3N NAI 650 A 1 HETATM 39 C C7N NAI . . . C 2 -16.407 38.693 8.47 1 69.98 ? C7N NAI 650 A 1 HETATM 40 O O7N NAI . . . C 2 -16.143 37.533 8.243 1 73.51 ? O7N NAI 650 A 1 HETATM 41 N N7N NAI . . . C 2 -17.242 39.354 7.636 1 69.14 ? N7N NAI 650 A 1 HETATM 42 C C4N NAI . . . C 2 -14.641 38.706 10.434 1 68.07 ? C4N NAI 650 A 1 HETATM 43 C C5N NAI . . . C 2 -13.856 39.465 11.398 1 67.42 ? C5N NAI 650 A 1 HETATM 44 C C6N NAI . . . C 2 -14.154 40.83 11.587 1 67.86 ? C6N NAI 650 A 1 # _model_server_stats.io_time_ms 70 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 1130 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 44 #