data_1P1W # _model_server_result.job_id 0fHhlAfrCQpBGrWcyOxqKg _model_server_result.datetime_utc '2024-11-28 07:25:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1p1w # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":428}' # _entry.id 1P1W # _exptl.entry_id 1P1W _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 186.165 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(S)-ALPHA-AMINO-3-HYDROXY-5-METHYL-4-ISOXAZOLEPROPIONIC ACID' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1P1W _cell.length_a 98.883 _cell.length_b 121.471 _cell.length_c 47.229 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1P1W _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 206 A CYS 206 1_555 A SG CYS 261 A CYS 261 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf2 B SG CYS 206 B CYS 206 1_555 B SG CYS 261 B CYS 261 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? # _chem_comp.formula 'C7 H10 N2 O4' _chem_comp.formula_weight 186.165 _chem_comp.id AMQ _chem_comp.mon_nstd_flag . _chem_comp.name '(S)-ALPHA-AMINO-3-HYDROXY-5-METHYL-4-ISOXAZOLEPROPIONIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms AMPA # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA AMQ sing 13 n n N H AMQ sing 14 n n N HN2 AMQ sing 15 n n CA C AMQ sing 16 n n CA CB AMQ sing 17 n n CA HA AMQ sing 18 n n C OT1 AMQ doub 19 n n C OT2 AMQ sing 20 n n OT2 HXT AMQ sing 21 n n CB CG AMQ sing 22 n n CB HB1 AMQ sing 23 n n CB HB2 AMQ sing 24 n n CG CD1 AMQ sing 25 n y CG CD2 AMQ doub 26 n y CD1 OE1 AMQ sing 27 n n CD1 NE1 AMQ doub 28 n y CD2 CE2 AMQ sing 29 n n CD2 OE2 AMQ sing 30 n y CE2 HE21 AMQ sing 31 n n CE2 HE22 AMQ sing 32 n n CE2 HE23 AMQ sing 33 n n OE1 HE1 AMQ sing 34 n n NE1 OE2 AMQ sing 35 n y # _atom_sites.entry_id 1P1W _atom_sites.fract_transf_matrix[1][1] 0.010113 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008232 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.021173 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SO4 A 1 502 2 SO4 SO4 . D 3 AMQ A 1 428 428 AMQ AMQ . E 2 SO4 B 1 501 1 SO4 SO4 . F 3 AMQ B 1 427 427 AMQ AMQ . G 4 HOH A 1 503 2 HOH TIP . G 4 HOH A 2 504 4 HOH TIP . G 4 HOH A 3 505 5 HOH TIP . G 4 HOH A 4 506 7 HOH TIP . G 4 HOH A 5 507 8 HOH TIP . G 4 HOH A 6 508 9 HOH TIP . G 4 HOH A 7 509 10 HOH TIP . G 4 HOH A 8 510 11 HOH TIP . G 4 HOH A 9 511 12 HOH TIP . G 4 HOH A 10 512 14 HOH TIP . G 4 HOH A 11 513 17 HOH TIP . G 4 HOH A 12 514 18 HOH TIP . G 4 HOH A 13 515 20 HOH TIP . G 4 HOH A 14 516 21 HOH TIP . G 4 HOH A 15 517 23 HOH TIP . G 4 HOH A 16 518 24 HOH TIP . G 4 HOH A 17 519 25 HOH TIP . G 4 HOH A 18 520 28 HOH TIP . G 4 HOH A 19 521 29 HOH TIP . G 4 HOH A 20 522 30 HOH TIP . G 4 HOH A 21 523 31 HOH TIP . G 4 HOH A 22 524 35 HOH TIP . G 4 HOH A 23 525 37 HOH TIP . G 4 HOH A 24 526 38 HOH TIP . G 4 HOH A 25 527 39 HOH TIP . G 4 HOH A 26 528 40 HOH TIP . G 4 HOH A 27 529 42 HOH TIP . G 4 HOH A 28 530 44 HOH TIP . G 4 HOH A 29 531 48 HOH TIP . G 4 HOH A 30 532 50 HOH TIP . G 4 HOH A 31 533 51 HOH TIP . G 4 HOH A 32 534 53 HOH TIP . G 4 HOH A 33 535 57 HOH TIP . G 4 HOH A 34 536 60 HOH TIP . G 4 HOH A 35 537 64 HOH TIP . G 4 HOH A 36 538 65 HOH TIP . G 4 HOH A 37 539 66 HOH TIP . G 4 HOH A 38 540 67 HOH TIP . G 4 HOH A 39 541 69 HOH TIP . G 4 HOH A 40 542 72 HOH TIP . G 4 HOH A 41 543 78 HOH TIP . G 4 HOH A 42 544 79 HOH TIP . G 4 HOH A 43 545 80 HOH TIP . G 4 HOH A 44 546 84 HOH TIP . G 4 HOH A 45 547 85 HOH TIP . G 4 HOH A 46 548 90 HOH TIP . G 4 HOH A 47 549 91 HOH TIP . G 4 HOH A 48 550 92 HOH TIP . G 4 HOH A 49 551 93 HOH TIP . G 4 HOH A 50 552 94 HOH TIP . G 4 HOH A 51 553 96 HOH TIP . G 4 HOH A 52 554 104 HOH TIP . G 4 HOH A 53 555 109 HOH TIP . G 4 HOH A 54 556 111 HOH TIP . G 4 HOH A 55 557 112 HOH TIP . G 4 HOH A 56 558 113 HOH TIP . G 4 HOH A 57 559 114 HOH TIP . G 4 HOH A 58 560 116 HOH TIP . G 4 HOH A 59 561 120 HOH TIP . G 4 HOH A 60 562 129 HOH TIP . G 4 HOH A 61 563 130 HOH TIP . G 4 HOH A 62 564 131 HOH TIP . G 4 HOH A 63 565 134 HOH TIP . G 4 HOH A 64 566 136 HOH TIP . G 4 HOH A 65 567 138 HOH TIP . G 4 HOH A 66 568 141 HOH TIP . G 4 HOH A 67 569 142 HOH TIP . G 4 HOH A 68 570 145 HOH TIP . G 4 HOH A 69 571 146 HOH TIP . G 4 HOH A 70 572 148 HOH TIP . G 4 HOH A 71 573 149 HOH TIP . G 4 HOH A 72 574 150 HOH TIP . G 4 HOH A 73 575 151 HOH TIP . G 4 HOH A 74 576 153 HOH TIP . G 4 HOH A 75 577 154 HOH TIP . G 4 HOH A 76 578 155 HOH TIP . G 4 HOH A 77 579 157 HOH TIP . G 4 HOH A 78 580 160 HOH TIP . G 4 HOH A 79 581 168 HOH TIP . G 4 HOH A 80 582 170 HOH TIP . G 4 HOH A 81 583 171 HOH TIP . G 4 HOH A 82 584 172 HOH TIP . G 4 HOH A 83 585 173 HOH TIP . G 4 HOH A 84 586 174 HOH TIP . G 4 HOH A 85 587 175 HOH TIP . G 4 HOH A 86 588 180 HOH TIP . G 4 HOH A 87 589 182 HOH TIP . G 4 HOH A 88 590 184 HOH TIP . G 4 HOH A 89 591 192 HOH TIP . G 4 HOH A 90 592 197 HOH TIP . G 4 HOH A 91 593 198 HOH TIP . G 4 HOH A 92 594 199 HOH TIP . G 4 HOH A 93 595 200 HOH TIP . G 4 HOH A 94 596 203 HOH TIP . G 4 HOH A 95 597 205 HOH TIP . G 4 HOH A 96 598 206 HOH TIP . G 4 HOH A 97 599 207 HOH TIP . G 4 HOH A 98 600 211 HOH TIP . G 4 HOH A 99 601 212 HOH TIP . G 4 HOH A 100 602 214 HOH TIP . G 4 HOH A 101 603 222 HOH TIP . G 4 HOH A 102 604 224 HOH TIP . G 4 HOH A 103 605 225 HOH TIP . G 4 HOH A 104 606 229 HOH TIP . H 4 HOH B 1 502 1 HOH TIP . H 4 HOH B 2 503 3 HOH TIP . H 4 HOH B 3 504 6 HOH TIP . H 4 HOH B 4 505 13 HOH TIP . H 4 HOH B 5 506 15 HOH TIP . H 4 HOH B 6 507 16 HOH TIP . H 4 HOH B 7 508 19 HOH TIP . H 4 HOH B 8 509 22 HOH TIP . H 4 HOH B 9 510 26 HOH TIP . H 4 HOH B 10 511 27 HOH TIP . H 4 HOH B 11 512 32 HOH TIP . H 4 HOH B 12 513 33 HOH TIP . H 4 HOH B 13 514 34 HOH TIP . H 4 HOH B 14 515 36 HOH TIP . H 4 HOH B 15 516 41 HOH TIP . H 4 HOH B 16 517 43 HOH TIP . H 4 HOH B 17 518 45 HOH TIP . H 4 HOH B 18 519 46 HOH TIP . H 4 HOH B 19 520 47 HOH TIP . H 4 HOH B 20 521 49 HOH TIP . H 4 HOH B 21 522 52 HOH TIP . H 4 HOH B 22 523 54 HOH TIP . H 4 HOH B 23 524 55 HOH TIP . H 4 HOH B 24 525 56 HOH TIP . H 4 HOH B 25 526 58 HOH TIP . H 4 HOH B 26 527 59 HOH TIP . H 4 HOH B 27 528 61 HOH TIP . H 4 HOH B 28 529 62 HOH TIP . H 4 HOH B 29 530 63 HOH TIP . H 4 HOH B 30 531 68 HOH TIP . H 4 HOH B 31 532 70 HOH TIP . H 4 HOH B 32 533 71 HOH TIP . H 4 HOH B 33 534 73 HOH TIP . H 4 HOH B 34 535 74 HOH TIP . H 4 HOH B 35 536 75 HOH TIP . H 4 HOH B 36 537 76 HOH TIP . H 4 HOH B 37 538 77 HOH TIP . H 4 HOH B 38 539 81 HOH TIP . H 4 HOH B 39 540 82 HOH TIP . H 4 HOH B 40 541 83 HOH TIP . H 4 HOH B 41 542 86 HOH TIP . H 4 HOH B 42 543 87 HOH TIP . H 4 HOH B 43 544 88 HOH TIP . H 4 HOH B 44 545 89 HOH TIP . H 4 HOH B 45 546 95 HOH TIP . H 4 HOH B 46 547 97 HOH TIP . H 4 HOH B 47 548 98 HOH TIP . H 4 HOH B 48 549 99 HOH TIP . H 4 HOH B 49 550 100 HOH TIP . H 4 HOH B 50 551 101 HOH TIP . H 4 HOH B 51 552 102 HOH TIP . H 4 HOH B 52 553 103 HOH TIP . H 4 HOH B 53 554 105 HOH TIP . H 4 HOH B 54 555 106 HOH TIP . H 4 HOH B 55 556 107 HOH TIP . H 4 HOH B 56 557 108 HOH TIP . H 4 HOH B 57 558 110 HOH TIP . H 4 HOH B 58 559 115 HOH TIP . H 4 HOH B 59 560 117 HOH TIP . H 4 HOH B 60 561 118 HOH TIP . H 4 HOH B 61 562 119 HOH TIP . H 4 HOH B 62 563 121 HOH TIP . H 4 HOH B 63 564 122 HOH TIP . H 4 HOH B 64 565 123 HOH TIP . H 4 HOH B 65 566 124 HOH TIP . H 4 HOH B 66 567 125 HOH TIP . H 4 HOH B 67 568 126 HOH TIP . H 4 HOH B 68 569 127 HOH TIP . H 4 HOH B 69 570 128 HOH TIP . H 4 HOH B 70 571 132 HOH TIP . H 4 HOH B 71 572 133 HOH TIP . H 4 HOH B 72 573 135 HOH TIP . H 4 HOH B 73 574 137 HOH TIP . H 4 HOH B 74 575 139 HOH TIP . H 4 HOH B 75 576 140 HOH TIP . H 4 HOH B 76 577 143 HOH TIP . H 4 HOH B 77 578 144 HOH TIP . H 4 HOH B 78 579 147 HOH TIP . H 4 HOH B 79 580 152 HOH TIP . H 4 HOH B 80 581 156 HOH TIP . H 4 HOH B 81 582 158 HOH TIP . H 4 HOH B 82 583 159 HOH TIP . H 4 HOH B 83 584 161 HOH TIP . H 4 HOH B 84 585 162 HOH TIP . H 4 HOH B 85 586 163 HOH TIP . H 4 HOH B 86 587 164 HOH TIP . H 4 HOH B 87 588 165 HOH TIP . H 4 HOH B 88 589 166 HOH TIP . H 4 HOH B 89 590 167 HOH TIP . H 4 HOH B 90 591 169 HOH TIP . H 4 HOH B 91 592 176 HOH TIP . H 4 HOH B 92 593 177 HOH TIP . H 4 HOH B 93 594 178 HOH TIP . H 4 HOH B 94 595 179 HOH TIP . H 4 HOH B 95 596 181 HOH TIP . H 4 HOH B 96 597 183 HOH TIP . H 4 HOH B 97 598 185 HOH TIP . H 4 HOH B 98 599 186 HOH TIP . H 4 HOH B 99 600 187 HOH TIP . H 4 HOH B 100 601 188 HOH TIP . H 4 HOH B 101 602 189 HOH TIP . H 4 HOH B 102 603 190 HOH TIP . H 4 HOH B 103 604 191 HOH TIP . H 4 HOH B 104 605 193 HOH TIP . H 4 HOH B 105 606 194 HOH TIP . H 4 HOH B 106 607 195 HOH TIP . H 4 HOH B 107 608 196 HOH TIP . H 4 HOH B 108 609 201 HOH TIP . H 4 HOH B 109 610 202 HOH TIP . H 4 HOH B 110 611 204 HOH TIP . H 4 HOH B 111 612 208 HOH TIP . H 4 HOH B 112 613 209 HOH TIP . H 4 HOH B 113 614 210 HOH TIP . H 4 HOH B 114 615 213 HOH TIP . H 4 HOH B 115 616 215 HOH TIP . H 4 HOH B 116 617 216 HOH TIP . H 4 HOH B 117 618 217 HOH TIP . H 4 HOH B 118 619 218 HOH TIP . H 4 HOH B 119 620 219 HOH TIP . H 4 HOH B 120 621 220 HOH TIP . H 4 HOH B 121 622 221 HOH TIP . H 4 HOH B 122 623 223 HOH TIP . H 4 HOH B 123 624 226 HOH TIP . H 4 HOH B 124 625 227 HOH TIP . H 4 HOH B 125 626 228 HOH TIP . H 4 HOH B 126 627 230 HOH TIP . H 4 HOH B 127 628 231 HOH TIP . H 4 HOH B 128 629 232 HOH TIP . H 4 HOH B 129 630 233 HOH TIP . H 4 HOH B 130 631 234 HOH TIP . H 4 HOH B 131 632 235 HOH TIP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N AMQ . . . D 3 10.391 26.065 19.423 1 17.98 ? N AMQ 428 A 1 HETATM 2 C CA AMQ . . . D 3 8.894 26.02 19.331 1 17.32 ? CA AMQ 428 A 1 HETATM 3 C C AMQ . . . D 3 8.405 25.975 17.843 1 29.05 ? C AMQ 428 A 1 HETATM 4 O OT1 AMQ . . . D 3 7.165 25.955 17.644 1 17.94 ? OT1 AMQ 428 A 1 HETATM 5 O OT2 AMQ . . . D 3 9.291 25.921 16.95 1 17.29 ? OT2 AMQ 428 A 1 HETATM 6 C CB AMQ . . . D 3 8.291 27.236 20.067 1 16.23 ? CB AMQ 428 A 1 HETATM 7 C CG AMQ . . . D 3 8.601 27.292 21.546 1 14.42 ? CG AMQ 428 A 1 HETATM 8 C CD1 AMQ . . . D 3 7.897 26.672 22.623 1 14.41 ? CD1 AMQ 428 A 1 HETATM 9 C CD2 AMQ . . . D 3 9.578 27.947 22.223 1 12.73 ? CD2 AMQ 428 A 1 HETATM 10 C CE2 AMQ . . . D 3 10.733 28.803 21.813 1 15.61 ? CE2 AMQ 428 A 1 HETATM 11 O OE1 AMQ . . . D 3 6.811 25.963 22.315 1 15.87 ? OE1 AMQ 428 A 1 HETATM 12 N NE1 AMQ . . . D 3 8.329 26.869 23.843 1 14.7 ? NE1 AMQ 428 A 1 HETATM 13 O OE2 AMQ . . . D 3 9.463 27.728 23.585 1 14.98 ? OE2 AMQ 428 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 347 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 13 #