data_1P2R
#
_model_server_result.job_id            bJaU9UrZxgdIazEitcSvBA 
_model_server_result.datetime_utc      '2024-12-18 02:23:50' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1p2r 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":966}' 
#
_entry.id    1P2R 
#
_exptl.entry_id    1P2R 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              154.251 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '2-HYDROXYETHYL DISULFIDE' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            1P2R 
_cell.length_a            59.996 
_cell.length_b            59.996 
_cell.length_c            95.229 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1P2R 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        154 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 32 2 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             E 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OE2 GLU 11 A GLU 11 1_555 B K K . A K 972 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.141 ? 
metalc ? metalc2 A O GLU 11 A GLU 11 1_555 B K K . A K 972 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.932 ? 
metalc ? metalc3 A OH TYR 18 A TYR 18 1_555 B K K . A K 972 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.987 ? 
metalc ? metalc4 F O HOH . A HOH 204 1_555 B K K . A K 972 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.966 ? 
metalc ? metalc5 F O HOH . A HOH 207 1_555 B K K . A K 972 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.968 ? 
metalc ? metalc6 F O HOH . A HOH 304 1_555 B K K . A K 972 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.962 ? 
metalc ? metalc7 F O HOH . A HOH 405 1_555 B K K . A K 972 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.465 ? 
#
_chem_comp.formula           'C4 H10 O2 S2' 
_chem_comp.formula_weight    154.251 
_chem_comp.id                HED 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '2-HYDROXYETHYL DISULFIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 HED sing 129 n n 
C1 C2 HED sing 130 n n 
C1 H11 HED sing 131 n n 
C1 H12 HED sing 132 n n 
O1 HO1 HED sing 133 n n 
C2 S3 HED sing 134 n n 
C2 H21 HED sing 135 n n 
C2 H22 HED sing 136 n n 
S3 S4 HED sing 137 n n 
S4 C5 HED sing 138 n n 
C5 C6 HED sing 139 n n 
C5 H51 HED sing 140 n n 
C5 H52 HED sing 141 n n 
C6 O6 HED sing 142 n n 
C6 H61 HED sing 143 n n 
C6 H62 HED sing 144 n n 
O6 HO6 HED sing 145 n n 
#
_atom_sites.entry_id                     1P2R 
_atom_sites.fract_transf_matrix[1][1]    0.016668 
_atom_sites.fract_transf_matrix[1][2]    0.009623 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.019246 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010501 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 K A 1 972 972 K K . 
C 3 CL A 1 973 973 CL CL . 
D 3 CL A 1 978 978 CL CL . 
E 4 HED A 1 966 966 HED HED . 
F 5 HOH A 1 171 171 HOH HOH . 
F 5 HOH A 2 172 172 HOH HOH . 
F 5 HOH A 3 174 174 HOH HOH . 
F 5 HOH A 4 175 175 HOH HOH . 
F 5 HOH A 5 177 177 HOH HOH . 
F 5 HOH A 6 179 179 HOH HOH . 
F 5 HOH A 7 180 180 HOH HOH . 
F 5 HOH A 8 181 181 HOH HOH . 
F 5 HOH A 9 182 182 HOH HOH . 
F 5 HOH A 10 183 183 HOH HOH . 
F 5 HOH A 11 184 184 HOH HOH . 
F 5 HOH A 12 185 185 HOH HOH . 
F 5 HOH A 13 186 186 HOH HOH . 
F 5 HOH A 14 187 187 HOH HOH . 
F 5 HOH A 15 188 188 HOH HOH . 
F 5 HOH A 16 189 189 HOH HOH . 
F 5 HOH A 17 190 190 HOH HOH . 
F 5 HOH A 18 191 191 HOH HOH . 
F 5 HOH A 19 192 192 HOH HOH . 
F 5 HOH A 20 193 193 HOH HOH . 
F 5 HOH A 21 194 194 HOH HOH . 
F 5 HOH A 22 195 195 HOH HOH . 
F 5 HOH A 23 196 196 HOH HOH . 
F 5 HOH A 24 197 197 HOH HOH . 
F 5 HOH A 25 200 200 HOH HOH . 
F 5 HOH A 26 202 202 HOH HOH . 
F 5 HOH A 27 204 204 HOH HOH . 
F 5 HOH A 28 206 206 HOH HOH . 
F 5 HOH A 29 207 207 HOH HOH . 
F 5 HOH A 30 208 208 HOH HOH . 
F 5 HOH A 31 209 209 HOH HOH . 
F 5 HOH A 32 211 211 HOH HOH . 
F 5 HOH A 33 213 213 HOH HOH . 
F 5 HOH A 34 214 214 HOH HOH . 
F 5 HOH A 35 215 215 HOH HOH . 
F 5 HOH A 36 216 216 HOH HOH . 
F 5 HOH A 37 217 217 HOH HOH . 
F 5 HOH A 38 218 218 HOH HOH . 
F 5 HOH A 39 219 219 HOH HOH . 
F 5 HOH A 40 220 220 HOH HOH . 
F 5 HOH A 41 221 221 HOH HOH . 
F 5 HOH A 42 222 222 HOH HOH . 
F 5 HOH A 43 223 223 HOH HOH . 
F 5 HOH A 44 224 224 HOH HOH . 
F 5 HOH A 45 225 225 HOH HOH . 
F 5 HOH A 46 226 226 HOH HOH . 
F 5 HOH A 47 227 227 HOH HOH . 
F 5 HOH A 48 228 228 HOH HOH . 
F 5 HOH A 49 230 230 HOH HOH . 
F 5 HOH A 50 231 231 HOH HOH . 
F 5 HOH A 51 232 232 HOH HOH . 
F 5 HOH A 52 233 233 HOH HOH . 
F 5 HOH A 53 234 234 HOH HOH . 
F 5 HOH A 54 236 236 HOH HOH . 
F 5 HOH A 55 237 237 HOH HOH . 
F 5 HOH A 56 238 238 HOH HOH . 
F 5 HOH A 57 239 239 HOH HOH . 
F 5 HOH A 58 240 240 HOH HOH . 
F 5 HOH A 59 242 242 HOH HOH . 
F 5 HOH A 60 244 244 HOH HOH . 
F 5 HOH A 61 246 246 HOH HOH . 
F 5 HOH A 62 247 247 HOH HOH . 
F 5 HOH A 63 248 248 HOH HOH . 
F 5 HOH A 64 249 249 HOH HOH . 
F 5 HOH A 65 250 250 HOH HOH . 
F 5 HOH A 66 251 251 HOH HOH . 
F 5 HOH A 67 253 253 HOH HOH . 
F 5 HOH A 68 254 254 HOH HOH . 
F 5 HOH A 69 256 256 HOH HOH . 
F 5 HOH A 70 259 259 HOH HOH . 
F 5 HOH A 71 260 260 HOH HOH . 
F 5 HOH A 72 261 261 HOH HOH . 
F 5 HOH A 73 262 262 HOH HOH . 
F 5 HOH A 74 266 266 HOH HOH . 
F 5 HOH A 75 269 269 HOH HOH . 
F 5 HOH A 76 270 270 HOH HOH . 
F 5 HOH A 77 272 272 HOH HOH . 
F 5 HOH A 78 273 273 HOH HOH . 
F 5 HOH A 79 274 274 HOH HOH . 
F 5 HOH A 80 276 276 HOH HOH . 
F 5 HOH A 81 278 278 HOH HOH . 
F 5 HOH A 82 279 279 HOH HOH . 
F 5 HOH A 83 281 281 HOH HOH . 
F 5 HOH A 84 282 282 HOH HOH . 
F 5 HOH A 85 283 283 HOH HOH . 
F 5 HOH A 86 286 286 HOH HOH . 
F 5 HOH A 87 288 288 HOH HOH . 
F 5 HOH A 88 292 292 HOH HOH . 
F 5 HOH A 89 293 293 HOH HOH . 
F 5 HOH A 90 294 294 HOH HOH . 
F 5 HOH A 91 295 295 HOH HOH . 
F 5 HOH A 92 296 296 HOH HOH . 
F 5 HOH A 93 297 297 HOH HOH . 
F 5 HOH A 94 299 299 HOH HOH . 
F 5 HOH A 95 302 302 HOH HOH . 
F 5 HOH A 96 304 304 HOH HOH . 
F 5 HOH A 97 306 306 HOH HOH . 
F 5 HOH A 98 308 308 HOH HOH . 
F 5 HOH A 99 311 311 HOH HOH . 
F 5 HOH A 100 312 312 HOH HOH . 
F 5 HOH A 101 313 313 HOH HOH . 
F 5 HOH A 102 314 314 HOH HOH . 
F 5 HOH A 103 315 315 HOH HOH . 
F 5 HOH A 104 317 317 HOH HOH . 
F 5 HOH A 105 319 319 HOH HOH . 
F 5 HOH A 106 320 320 HOH HOH . 
F 5 HOH A 107 402 402 HOH HOH . 
F 5 HOH A 108 405 405 HOH HOH . 
F 5 HOH A 109 406 406 HOH HOH . 
F 5 HOH A 110 407 407 HOH HOH . 
F 5 HOH A 111 408 408 HOH HOH . 
F 5 HOH A 112 409 409 HOH HOH . 
F 5 HOH A 113 410 410 HOH HOH . 
F 5 HOH A 114 411 411 HOH HOH . 
F 5 HOH A 115 412 412 HOH HOH . 
F 5 HOH A 116 413 413 HOH HOH . 
F 5 HOH A 117 414 414 HOH HOH . 
F 5 HOH A 118 415 415 HOH HOH . 
F 5 HOH A 119 417 417 HOH HOH . 
F 5 HOH A 120 418 418 HOH HOH . 
F 5 HOH A 121 420 420 HOH HOH . 
F 5 HOH A 122 423 423 HOH HOH . 
F 5 HOH A 123 424 424 HOH HOH . 
F 5 HOH A 124 427 427 HOH HOH . 
F 5 HOH A 125 428 428 HOH HOH . 
F 5 HOH A 126 429 429 HOH HOH . 
F 5 HOH A 127 430 430 HOH HOH . 
F 5 HOH A 128 431 431 HOH HOH . 
F 5 HOH A 129 432 432 HOH HOH . 
F 5 HOH A 130 435 435 HOH HOH . 
F 5 HOH A 131 436 436 HOH HOH . 
F 5 HOH A 132 437 437 HOH HOH . 
F 5 HOH A 133 439 439 HOH HOH . 
F 5 HOH A 134 440 440 HOH HOH . 
F 5 HOH A 135 442 442 HOH HOH . 
F 5 HOH A 136 444 444 HOH HOH . 
F 5 HOH A 137 448 448 HOH HOH . 
F 5 HOH A 138 449 449 HOH HOH . 
F 5 HOH A 139 450 450 HOH HOH . 
F 5 HOH A 140 453 453 HOH HOH . 
F 5 HOH A 141 454 454 HOH HOH . 
F 5 HOH A 142 456 456 HOH HOH . 
F 5 HOH A 143 457 457 HOH HOH . 
F 5 HOH A 144 458 458 HOH HOH . 
F 5 HOH A 145 459 459 HOH HOH . 
F 5 HOH A 146 460 460 HOH HOH . 
F 5 HOH A 147 461 461 HOH HOH . 
F 5 HOH A 148 462 462 HOH HOH . 
F 5 HOH A 149 466 466 HOH HOH . 
F 5 HOH A 150 467 467 HOH HOH . 
F 5 HOH A 151 468 468 HOH HOH . 
F 5 HOH A 152 469 469 HOH HOH . 
F 5 HOH A 153 470 470 HOH HOH . 
F 5 HOH A 154 471 471 HOH HOH . 
F 5 HOH A 155 473 473 HOH HOH . 
F 5 HOH A 156 474 474 HOH HOH . 
F 5 HOH A 157 475 475 HOH HOH . 
F 5 HOH A 158 476 476 HOH HOH . 
F 5 HOH A 159 477 477 HOH HOH . 
F 5 HOH A 160 480 480 HOH HOH . 
F 5 HOH A 161 482 482 HOH HOH . 
F 5 HOH A 162 491 491 HOH HOH . 
F 5 HOH A 163 492 492 HOH HOH . 
F 5 HOH A 164 493 493 HOH HOH . 
F 5 HOH A 165 496 496 HOH HOH . 
F 5 HOH A 166 500 500 HOH HOH . 
F 5 HOH A 167 502 502 HOH HOH . 
F 5 HOH A 168 503 503 HOH HOH . 
F 5 HOH A 169 504 504 HOH HOH . 
F 5 HOH A 170 505 505 HOH HOH . 
F 5 HOH A 171 506 506 HOH HOH . 
F 5 HOH A 172 507 507 HOH HOH . 
F 5 HOH A 173 508 508 HOH HOH . 
F 5 HOH A 174 509 509 HOH HOH . 
F 5 HOH A 175 510 510 HOH HOH . 
F 5 HOH A 176 512 512 HOH HOH . 
F 5 HOH A 177 513 513 HOH HOH . 
F 5 HOH A 178 515 515 HOH HOH . 
F 5 HOH A 179 516 516 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 HED . . . E 4 32.664 0.8 21.682 0.5 16.6 ? C1 HED 966 A 1 
HETATM 2 O O1 HED . . . E 4 33.246 1.988 22.175 0.5 20.61 ? O1 HED 966 A 1 
HETATM 3 C C2 HED . . . E 4 33.334 0.295 20.39 0.5 6.17 ? C2 HED 966 A 1 
HETATM 4 S S3 HED . . . E 4 33.344 1.446 18.973 0.5 27.67 ? S3 HED 966 A 1 
HETATM 5 S S4 HED . . . E 4 31.665 1.146 17.848 0.5 33.59 ? S4 HED 966 A 1 
HETATM 6 C C5 HED . . . E 4 32.259 0.692 16.192 0.5 100 ? C5 HED 966 A 1 
HETATM 7 C C6 HED . . . E 4 32.884 -0.719 16.048 0.5 10.1 ? C6 HED 966 A 1 
HETATM 8 O O6 HED . . . E 4 32.248 -1.431 14.993 0.5 42.02 ? O6 HED 966 A 1 
#
_model_server_stats.io_time_ms              62 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           313 
_model_server_stats.encode_time_ms          10 
_model_server_stats.element_count           8 
#