data_1P2S # _model_server_result.job_id MYi-RHZEIEvn4qIsDyBVjw _model_server_result.datetime_utc '2024-12-27 03:14:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1p2s # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":167}' # _entry.id 1P2S # _exptl.entry_id 1P2S _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 522.196 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1P2S _cell.length_a 40.33 _cell.length_b 40.33 _cell.length_c 161.33 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1P2S _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG SER 17 A SER 17 1_555 B MG MG . A MG 168 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.162 ? metalc ? metalc2 A OG1 THR 35 A THR 35 1_555 B MG MG . A MG 168 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.174 ? metalc ? metalc3 C O2G GNP . A GNP 167 1_555 B MG MG . A MG 168 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.298 ? metalc ? metalc4 C O2B GNP . A GNP 167 1_555 B MG MG . A MG 168 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.19 ? metalc ? metalc5 B MG MG . A MG 168 1_555 E O HOH . A HOH 230 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.18 ? metalc ? metalc6 B MG MG . A MG 168 1_555 E O HOH . A HOH 231 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.166 ? # _chem_comp.formula 'C10 H17 N6 O13 P3' _chem_comp.formula_weight 522.196 _chem_comp.id GNP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G GNP doub 137 n n PG O2G GNP sing 138 n n PG O3G GNP sing 139 n n PG N3B GNP sing 140 n n O2G HOG2 GNP sing 141 n n O3G HOG3 GNP sing 142 n n N3B PB GNP sing 143 n n N3B HNB3 GNP sing 144 n n PB O1B GNP doub 145 n n PB O2B GNP sing 146 n n PB O3A GNP sing 147 n n O2B HOB2 GNP sing 148 n n O3A PA GNP sing 149 n n PA O1A GNP doub 150 n n PA O2A GNP sing 151 n n PA O5' GNP sing 152 n n O2A HOA2 GNP sing 153 n n O5' C5' GNP sing 154 n n C5' C4' GNP sing 155 n n C5' "H5'2" GNP sing 156 n n C5' "H5'1" GNP sing 157 n n C4' O4' GNP sing 158 n n C4' C3' GNP sing 159 n n C4' H4' GNP sing 160 n n O4' C1' GNP sing 161 n n C3' O3' GNP sing 162 n n C3' C2' GNP sing 163 n n C3' H3' GNP sing 164 n n O3' HO3' GNP sing 165 n n C2' O2' GNP sing 166 n n C2' C1' GNP sing 167 n n C2' H2' GNP sing 168 n n O2' HO2' GNP sing 169 n n C1' N9 GNP sing 170 n n C1' H1' GNP sing 171 n n N9 C8 GNP sing 172 n y N9 C4 GNP sing 173 n y C8 N7 GNP doub 174 n y C8 H8 GNP sing 175 n n N7 C5 GNP sing 176 n y C5 C6 GNP sing 177 n y C5 C4 GNP doub 178 n y C6 O6 GNP doub 179 n n C6 N1 GNP sing 180 n y N1 C2 GNP sing 181 n y N1 HN1 GNP sing 182 n n C2 N2 GNP sing 183 n n C2 N3 GNP doub 184 n y N2 HN21 GNP sing 185 n n N2 HN22 GNP sing 186 n n N3 C4 GNP sing 187 n y # _atom_sites.entry_id 1P2S _atom_sites.fract_transf_matrix[1][1] 0.024795 _atom_sites.fract_transf_matrix[1][2] 0.014316 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.028631 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006198 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG A 1 168 168 MG MG . C 3 GNP A 1 167 167 GNP GNP . D 4 ETF A 1 400 400 ETF ETF . E 5 HOH A 1 201 201 HOH HOH . E 5 HOH A 2 202 202 HOH HOH . E 5 HOH A 3 203 203 HOH HOH . E 5 HOH A 4 204 204 HOH HOH . E 5 HOH A 5 205 205 HOH HOH . E 5 HOH A 6 206 206 HOH HOH . E 5 HOH A 7 207 207 HOH HOH . E 5 HOH A 8 208 208 HOH HOH . E 5 HOH A 9 209 209 HOH HOH . E 5 HOH A 10 210 210 HOH HOH . E 5 HOH A 11 211 211 HOH HOH . E 5 HOH A 12 212 212 HOH HOH . E 5 HOH A 13 213 213 HOH HOH . E 5 HOH A 14 214 214 HOH HOH . E 5 HOH A 15 215 215 HOH HOH . E 5 HOH A 16 216 216 HOH HOH . E 5 HOH A 17 217 217 HOH HOH . E 5 HOH A 18 218 218 HOH HOH . E 5 HOH A 19 219 219 HOH HOH . E 5 HOH A 20 220 220 HOH HOH . E 5 HOH A 21 221 221 HOH HOH . E 5 HOH A 22 222 222 HOH HOH . E 5 HOH A 23 223 223 HOH HOH . E 5 HOH A 24 224 224 HOH HOH . E 5 HOH A 25 225 225 HOH HOH . E 5 HOH A 26 226 226 HOH HOH . E 5 HOH A 27 227 227 HOH HOH . E 5 HOH A 28 228 228 HOH HOH . E 5 HOH A 29 229 229 HOH HOH . E 5 HOH A 30 230 230 HOH HOH . E 5 HOH A 31 231 231 HOH HOH . E 5 HOH A 32 232 232 HOH HOH . E 5 HOH A 33 233 233 HOH HOH . E 5 HOH A 34 234 234 HOH HOH . E 5 HOH A 35 235 235 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG GNP . . . C 3 4.931 32.184 21.928 1 19.58 ? PG GNP 167 A 1 HETATM 2 O O1G GNP . . . C 3 4.626 32.518 23.312 1 21.12 ? O1G GNP 167 A 1 HETATM 3 O O2G GNP . . . C 3 4.061 32.878 21.05 1 21.03 ? O2G GNP 167 A 1 HETATM 4 O O3G GNP . . . C 3 4.448 30.747 21.713 1 17.09 ? O3G GNP 167 A 1 HETATM 5 N N3B GNP . . . C 3 6.515 32.267 21.588 1 20.46 ? N3B GNP 167 A 1 HETATM 6 P PB GNP . . . C 3 7.172 31.95 20.093 1 18.53 ? PB GNP 167 A 1 HETATM 7 O O1B GNP . . . C 3 7.399 30.519 19.841 1 19.21 ? O1B GNP 167 A 1 HETATM 8 O O2B GNP . . . C 3 6.563 32.597 18.954 1 18.68 ? O2B GNP 167 A 1 HETATM 9 O O3A GNP . . . C 3 8.6 32.62 20.174 1 16.77 ? O3A GNP 167 A 1 HETATM 10 P PA GNP . . . C 3 9.104 34.076 19.643 1 33.52 ? PA GNP 167 A 1 HETATM 11 O O1A GNP . . . C 3 9.15 34.105 18.153 1 22.3 ? O1A GNP 167 A 1 HETATM 12 O O2A GNP . . . C 3 8.407 35.181 20.339 1 18.81 ? O2A GNP 167 A 1 HETATM 13 O O5' GNP . . . C 3 10.624 33.963 20.124 1 22.6 ? O5' GNP 167 A 1 HETATM 14 C C5' GNP . . . C 3 10.924 33.904 21.551 1 24.11 ? C5' GNP 167 A 1 HETATM 15 C C4' GNP . . . C 3 12.35 34.412 21.827 1 25.38 ? C4' GNP 167 A 1 HETATM 16 O O4' GNP . . . C 3 13.297 33.582 21.096 1 24.61 ? O4' GNP 167 A 1 HETATM 17 C C3' GNP . . . C 3 12.581 35.864 21.344 1 25.4 ? C3' GNP 167 A 1 HETATM 18 O O3' GNP . . . C 3 13.369 36.659 22.295 1 27.28 ? O3' GNP 167 A 1 HETATM 19 C C2' GNP . . . C 3 13.242 35.65 19.988 1 24.73 ? C2' GNP 167 A 1 HETATM 20 O O2' GNP . . . C 3 14.137 36.677 19.593 1 27.06 ? O2' GNP 167 A 1 HETATM 21 C C1' GNP . . . C 3 14.077 34.388 20.218 1 24.14 ? C1' GNP 167 A 1 HETATM 22 N N9 GNP . . . C 3 14.313 33.657 18.948 1 22.91 ? N9 GNP 167 A 1 HETATM 23 C C8 GNP . . . C 3 13.402 33.202 18.009 1 19.69 ? C8 GNP 167 A 1 HETATM 24 N N7 GNP . . . C 3 13.921 32.597 16.996 1 20.31 ? N7 GNP 167 A 1 HETATM 25 C C5 GNP . . . C 3 15.299 32.631 17.25 1 21.58 ? C5 GNP 167 A 1 HETATM 26 C C6 GNP . . . C 3 16.437 32.116 16.482 1 21.03 ? C6 GNP 167 A 1 HETATM 27 O O6 GNP . . . C 3 16.425 31.517 15.412 1 20.79 ? O6 GNP 167 A 1 HETATM 28 N N1 GNP . . . C 3 17.669 32.37 17.108 1 20.32 ? N1 GNP 167 A 1 HETATM 29 C C2 GNP . . . C 3 17.831 33.045 18.334 1 23.7 ? C2 GNP 167 A 1 HETATM 30 N N2 GNP . . . C 3 19.09 33.213 18.81 1 22.51 ? N2 GNP 167 A 1 HETATM 31 N N3 GNP . . . C 3 16.764 33.525 19.046 1 23.15 ? N3 GNP 167 A 1 HETATM 32 C C4 GNP . . . C 3 15.543 33.291 18.454 1 21.62 ? C4 GNP 167 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 301 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 32 #