data_1P2T
#
_model_server_result.job_id            t3ZU8pdKbn5VR9vTsStnNA 
_model_server_result.datetime_utc      '2024-11-02 12:31:33' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1p2t 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":167}' 
#
_entry.id    1P2T 
#
_exptl.entry_id    1P2T 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              522.196 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            1P2T 
_cell.length_a            40.17 
_cell.length_b            40.17 
_cell.length_c            161.4 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1P2T 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        154 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 32 2 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OG SER 17 A SER 17 1_555 B MG MG . A MG 168 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.242 ? 
metalc ? metalc2 A OG1 THR 35 A THR 35 1_555 B MG MG . A MG 168 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.281 ? 
metalc ? metalc3 C O2G GNP . A GNP 167 1_555 B MG MG . A MG 168 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.295 ? 
metalc ? metalc4 C O2B GNP . A GNP 167 1_555 B MG MG . A MG 168 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.27 ? 
metalc ? metalc5 B MG MG . A MG 168 1_555 D O HOH . A HOH 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.266 ? 
metalc ? metalc6 B MG MG . A MG 168 1_555 D O HOH . A HOH 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.318 ? 
#
_chem_comp.formula           'C10 H17 N6 O13 P3' 
_chem_comp.formula_weight    522.196 
_chem_comp.id                GNP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G GNP doub 129 n n 
PG O2G GNP sing 130 n n 
PG O3G GNP sing 131 n n 
PG N3B GNP sing 132 n n 
O2G HOG2 GNP sing 133 n n 
O3G HOG3 GNP sing 134 n n 
N3B PB GNP sing 135 n n 
N3B HNB3 GNP sing 136 n n 
PB O1B GNP doub 137 n n 
PB O2B GNP sing 138 n n 
PB O3A GNP sing 139 n n 
O2B HOB2 GNP sing 140 n n 
O3A PA GNP sing 141 n n 
PA O1A GNP doub 142 n n 
PA O2A GNP sing 143 n n 
PA O5' GNP sing 144 n n 
O2A HOA2 GNP sing 145 n n 
O5' C5' GNP sing 146 n n 
C5' C4' GNP sing 147 n n 
C5' "H5'2" GNP sing 148 n n 
C5' "H5'1" GNP sing 149 n n 
C4' O4' GNP sing 150 n n 
C4' C3' GNP sing 151 n n 
C4' H4' GNP sing 152 n n 
O4' C1' GNP sing 153 n n 
C3' O3' GNP sing 154 n n 
C3' C2' GNP sing 155 n n 
C3' H3' GNP sing 156 n n 
O3' HO3' GNP sing 157 n n 
C2' O2' GNP sing 158 n n 
C2' C1' GNP sing 159 n n 
C2' H2' GNP sing 160 n n 
O2' HO2' GNP sing 161 n n 
C1' N9 GNP sing 162 n n 
C1' H1' GNP sing 163 n n 
N9 C8 GNP sing 164 n y 
N9 C4 GNP sing 165 n y 
C8 N7 GNP doub 166 n y 
C8 H8 GNP sing 167 n n 
N7 C5 GNP sing 168 n y 
C5 C6 GNP sing 169 n y 
C5 C4 GNP doub 170 n y 
C6 O6 GNP doub 171 n n 
C6 N1 GNP sing 172 n y 
N1 C2 GNP sing 173 n y 
N1 HN1 GNP sing 174 n n 
C2 N2 GNP sing 175 n n 
C2 N3 GNP doub 176 n y 
N2 HN21 GNP sing 177 n n 
N2 HN22 GNP sing 178 n n 
N3 C4 GNP sing 179 n y 
#
_atom_sites.entry_id                     1P2T 
_atom_sites.fract_transf_matrix[1][1]    0.024894 
_atom_sites.fract_transf_matrix[1][2]    0.014373 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.028745 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006196 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 MG A 1 168 168 MG MG . 
C 3 GNP A 1 167 167 GNP GNP . 
D 4 HOH A 1 202 202 HOH HOH . 
D 4 HOH A 2 203 203 HOH HOH . 
D 4 HOH A 3 204 204 HOH HOH . 
D 4 HOH A 4 205 205 HOH HOH . 
D 4 HOH A 5 206 206 HOH HOH . 
D 4 HOH A 6 207 207 HOH HOH . 
D 4 HOH A 7 208 208 HOH HOH . 
D 4 HOH A 8 209 209 HOH HOH . 
D 4 HOH A 9 210 210 HOH HOH . 
D 4 HOH A 10 211 211 HOH HOH . 
D 4 HOH A 11 212 212 HOH HOH . 
D 4 HOH A 12 213 213 HOH HOH . 
D 4 HOH A 13 214 214 HOH HOH . 
D 4 HOH A 14 216 216 HOH HOH . 
D 4 HOH A 15 217 217 HOH HOH . 
D 4 HOH A 16 218 218 HOH HOH . 
D 4 HOH A 17 219 219 HOH HOH . 
D 4 HOH A 18 220 220 HOH HOH . 
D 4 HOH A 19 221 221 HOH HOH . 
D 4 HOH A 20 222 222 HOH HOH . 
D 4 HOH A 21 223 223 HOH HOH . 
D 4 HOH A 22 224 224 HOH HOH . 
D 4 HOH A 23 225 225 HOH HOH . 
D 4 HOH A 24 226 226 HOH HOH . 
D 4 HOH A 25 227 227 HOH HOH . 
D 4 HOH A 26 228 228 HOH HOH . 
D 4 HOH A 27 229 229 HOH HOH . 
D 4 HOH A 28 230 230 HOH HOH . 
D 4 HOH A 29 231 231 HOH HOH . 
D 4 HOH A 30 232 232 HOH HOH . 
D 4 HOH A 31 233 233 HOH HOH . 
D 4 HOH A 32 234 234 HOH HOH . 
D 4 HOH A 33 235 235 HOH HOH . 
D 4 HOH A 34 236 236 HOH HOH . 
D 4 HOH A 35 237 237 HOH HOH . 
D 4 HOH A 36 238 238 HOH HOH . 
D 4 HOH A 37 239 239 HOH HOH . 
D 4 HOH A 38 240 240 HOH HOH . 
D 4 HOH A 39 241 241 HOH HOH . 
D 4 HOH A 40 242 242 HOH HOH . 
D 4 HOH A 41 243 243 HOH HOH . 
D 4 HOH A 42 244 244 HOH HOH . 
D 4 HOH A 43 245 245 HOH HOH . 
D 4 HOH A 44 246 246 HOH HOH . 
D 4 HOH A 45 247 247 HOH HOH . 
D 4 HOH A 46 248 248 HOH HOH . 
D 4 HOH A 47 249 249 HOH HOH . 
D 4 HOH A 48 250 250 HOH HOH . 
D 4 HOH A 49 251 251 HOH HOH . 
D 4 HOH A 50 252 252 HOH HOH . 
D 4 HOH A 51 253 253 HOH HOH . 
D 4 HOH A 52 254 254 HOH HOH . 
D 4 HOH A 53 255 255 HOH HOH . 
D 4 HOH A 54 256 256 HOH HOH . 
D 4 HOH A 55 257 257 HOH HOH . 
D 4 HOH A 56 258 258 HOH HOH . 
D 4 HOH A 57 259 259 HOH HOH . 
D 4 HOH A 58 260 260 HOH HOH . 
D 4 HOH A 59 261 261 HOH HOH . 
D 4 HOH A 60 262 262 HOH HOH . 
D 4 HOH A 61 263 263 HOH HOH . 
D 4 HOH A 62 264 264 HOH HOH . 
D 4 HOH A 63 265 265 HOH HOH . 
D 4 HOH A 64 266 266 HOH HOH . 
D 4 HOH A 65 267 267 HOH HOH . 
D 4 HOH A 66 268 268 HOH HOH . 
D 4 HOH A 67 269 269 HOH HOH . 
D 4 HOH A 68 270 270 HOH HOH . 
D 4 HOH A 69 271 271 HOH HOH . 
D 4 HOH A 70 272 272 HOH HOH . 
D 4 HOH A 71 273 273 HOH HOH . 
D 4 HOH A 72 274 274 HOH HOH . 
D 4 HOH A 73 275 275 HOH HOH . 
D 4 HOH A 74 276 276 HOH HOH . 
D 4 HOH A 75 277 277 HOH HOH . 
D 4 HOH A 76 278 278 HOH HOH . 
D 4 HOH A 77 279 279 HOH HOH . 
D 4 HOH A 78 280 280 HOH HOH . 
D 4 HOH A 79 281 281 HOH HOH . 
D 4 HOH A 80 282 282 HOH HOH . 
D 4 HOH A 81 283 283 HOH HOH . 
D 4 HOH A 82 284 284 HOH HOH . 
D 4 HOH A 83 285 285 HOH HOH . 
D 4 HOH A 84 286 286 HOH HOH . 
D 4 HOH A 85 287 287 HOH HOH . 
D 4 HOH A 86 288 288 HOH HOH . 
D 4 HOH A 87 289 289 HOH HOH . 
D 4 HOH A 88 290 290 HOH HOH . 
D 4 HOH A 89 291 291 HOH HOH . 
D 4 HOH A 90 292 292 HOH HOH . 
D 4 HOH A 91 293 293 HOH HOH . 
D 4 HOH A 92 294 294 HOH HOH . 
D 4 HOH A 93 295 295 HOH HOH . 
D 4 HOH A 94 296 296 HOH HOH . 
D 4 HOH A 95 297 297 HOH HOH . 
D 4 HOH A 96 298 298 HOH HOH . 
D 4 HOH A 97 299 299 HOH HOH . 
D 4 HOH A 98 300 300 HOH HOH . 
D 4 HOH A 99 301 301 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG GNP . . . C 3 4.987 32.073 21.953 1 11.55 ? PG GNP 167 A 1 
HETATM 2 O O1G GNP . . . C 3 4.735 32.432 23.353 1 9.16 ? O1G GNP 167 A 1 
HETATM 3 O O2G GNP . . . C 3 4.048 32.739 21.121 1 10.38 ? O2G GNP 167 A 1 
HETATM 4 O O3G GNP . . . C 3 4.54 30.627 21.747 1 9.98 ? O3G GNP 167 A 1 
HETATM 5 N N3B GNP . . . C 3 6.564 32.211 21.561 1 9.51 ? N3B GNP 167 A 1 
HETATM 6 P PB GNP . . . C 3 7.197 31.891 20.073 1 9.66 ? PB GNP 167 A 1 
HETATM 7 O O1B GNP . . . C 3 7.362 30.447 19.814 1 9.36 ? O1B GNP 167 A 1 
HETATM 8 O O2B GNP . . . C 3 6.623 32.586 18.962 1 6.83 ? O2B GNP 167 A 1 
HETATM 9 O O3A GNP . . . C 3 8.658 32.508 20.154 1 10.47 ? O3A GNP 167 A 1 
HETATM 10 P PA GNP . . . C 3 9.161 33.984 19.669 1 11.43 ? PA GNP 167 A 1 
HETATM 11 O O1A GNP . . . C 3 9.155 34.061 18.174 1 12.27 ? O1A GNP 167 A 1 
HETATM 12 O O2A GNP . . . C 3 8.461 35.054 20.422 1 8.28 ? O2A GNP 167 A 1 
HETATM 13 O O5' GNP . . . C 3 10.69 33.873 20.104 1 11.43 ? O5' GNP 167 A 1 
HETATM 14 C C5' GNP . . . C 3 11.021 33.777 21.522 1 12.54 ? C5' GNP 167 A 1 
HETATM 15 C C4' GNP . . . C 3 12.457 34.276 21.792 1 11.97 ? C4' GNP 167 A 1 
HETATM 16 O O4' GNP . . . C 3 13.378 33.471 21.025 1 11.59 ? O4' GNP 167 A 1 
HETATM 17 C C3' GNP . . . C 3 12.701 35.739 21.352 1 15.39 ? C3' GNP 167 A 1 
HETATM 18 O O3' GNP . . . C 3 13.564 36.449 22.282 1 14.03 ? O3' GNP 167 A 1 
HETATM 19 C C2' GNP . . . C 3 13.299 35.565 19.963 1 14.87 ? C2' GNP 167 A 1 
HETATM 20 O O2' GNP . . . C 3 14.167 36.625 19.537 1 17.37 ? O2' GNP 167 A 1 
HETATM 21 C C1' GNP . . . C 3 14.15 34.307 20.156 1 13.51 ? C1' GNP 167 A 1 
HETATM 22 N N9 GNP . . . C 3 14.374 33.579 18.894 1 14.63 ? N9 GNP 167 A 1 
HETATM 23 C C8 GNP . . . C 3 13.443 33.115 17.967 1 11.38 ? C8 GNP 167 A 1 
HETATM 24 N N7 GNP . . . C 3 13.945 32.506 16.951 1 12.63 ? N7 GNP 167 A 1 
HETATM 25 C C5 GNP . . . C 3 15.337 32.548 17.19 1 13.76 ? C5 GNP 167 A 1 
HETATM 26 C C6 GNP . . . C 3 16.463 32.033 16.415 1 14.18 ? C6 GNP 167 A 1 
HETATM 27 O O6 GNP . . . C 3 16.447 31.426 15.34 1 13.37 ? O6 GNP 167 A 1 
HETATM 28 N N1 GNP . . . C 3 17.701 32.296 17.028 1 12.54 ? N1 GNP 167 A 1 
HETATM 29 C C2 GNP . . . C 3 17.882 32.97 18.238 1 15.03 ? C2 GNP 167 A 1 
HETATM 30 N N2 GNP . . . C 3 19.144 33.139 18.685 1 14.3 ? N2 GNP 167 A 1 
HETATM 31 N N3 GNP . . . C 3 16.835 33.451 18.961 1 14.34 ? N3 GNP 167 A 1 
HETATM 32 C C4 GNP . . . C 3 15.602 33.212 18.387 1 14.15 ? C4 GNP 167 A 1 
#
_model_server_stats.io_time_ms              23 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           320 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           32 
#