data_1P2Y # _model_server_result.job_id W82Ybv0AUSZiDWffJ2KJlA _model_server_result.datetime_utc '2024-11-22 10:49:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1p2y # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":430}' # _entry.id 1P2Y # _exptl.entry_id 1P2Y _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1P2Y _cell.length_a 64.05 _cell.length_b 64.05 _cell.length_c 251.06 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1P2Y _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 357 A CYS 357 1_555 B FE HEM . A HEM 430 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.297 ? metalc ? metalc2 B FE HEM . A HEM 430 1_555 C N1 NCT . A NCT 440 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.198 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 129 n n CHA C4D HEM doub 130 n n CHA HHA HEM sing 131 n n CHB C4A HEM sing 132 n n CHB C1B HEM doub 133 n n CHB HHB HEM sing 134 n n CHC C4B HEM sing 135 n n CHC C1C HEM doub 136 n n CHC HHC HEM sing 137 n n CHD C4C HEM doub 138 n n CHD C1D HEM sing 139 n n CHD HHD HEM sing 140 n n C1A C2A HEM doub 141 n y C1A NA HEM sing 142 n y C2A C3A HEM sing 143 n y C2A CAA HEM sing 144 n n C3A C4A HEM doub 145 n y C3A CMA HEM sing 146 n n C4A NA HEM sing 147 n y CMA HMA HEM sing 148 n n CMA HMAA HEM sing 149 n n CMA HMAB HEM sing 150 n n CAA CBA HEM sing 151 n n CAA HAA HEM sing 152 n n CAA HAAA HEM sing 153 n n CBA CGA HEM sing 154 n n CBA HBA HEM sing 155 n n CBA HBAA HEM sing 156 n n CGA O1A HEM doub 157 n n CGA O2A HEM sing 158 n n C1B C2B HEM sing 159 n n C1B NB HEM sing 160 n n C2B C3B HEM doub 161 n n C2B CMB HEM sing 162 n n C3B C4B HEM sing 163 n n C3B CAB HEM sing 164 n n C4B NB HEM doub 165 n n CMB HMB HEM sing 166 n n CMB HMBA HEM sing 167 n n CMB HMBB HEM sing 168 n n CAB CBB HEM doub 169 n n CAB HAB HEM sing 170 n n CBB HBB HEM sing 171 n n CBB HBBA HEM sing 172 n n C1C C2C HEM sing 173 n y C1C NC HEM sing 174 n y C2C C3C HEM doub 175 n y C2C CMC HEM sing 176 n n C3C C4C HEM sing 177 n y C3C CAC HEM sing 178 n n C4C NC HEM sing 179 n y CMC HMC HEM sing 180 n n CMC HMCA HEM sing 181 n n CMC HMCB HEM sing 182 n n CAC CBC HEM doub 183 n n CAC HAC HEM sing 184 n n CBC HBC HEM sing 185 n n CBC HBCA HEM sing 186 n n C1D C2D HEM sing 187 n n C1D ND HEM doub 188 n n C2D C3D HEM doub 189 n n C2D CMD HEM sing 190 n n C3D C4D HEM sing 191 n n C3D CAD HEM sing 192 n n C4D ND HEM sing 193 n n CMD HMD HEM sing 194 n n CMD HMDA HEM sing 195 n n CMD HMDB HEM sing 196 n n CAD CBD HEM sing 197 n n CAD HAD HEM sing 198 n n CAD HADA HEM sing 199 n n CBD CGD HEM sing 200 n n CBD HBD HEM sing 201 n n CBD HBDA HEM sing 202 n n CGD O1D HEM doub 203 n n CGD O2D HEM sing 204 n n O2A H2A HEM sing 205 n n O2D H2D HEM sing 206 n n FE NA HEM sing 207 n n FE NB HEM sing 208 n n FE NC HEM sing 209 n n FE ND HEM sing 210 n n # _atom_sites.entry_id 1P2Y _atom_sites.fract_transf_matrix[1][1] 0.015613 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015613 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003983 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEM A 1 430 430 HEM HEM . C 3 NCT A 1 440 440 NCT NCT . D 4 HOH A 1 441 1 HOH WAT . D 4 HOH A 2 442 2 HOH WAT . D 4 HOH A 3 443 3 HOH WAT . D 4 HOH A 4 444 4 HOH WAT . D 4 HOH A 5 445 5 HOH WAT . D 4 HOH A 6 446 6 HOH WAT . D 4 HOH A 7 447 7 HOH WAT . D 4 HOH A 8 448 8 HOH WAT . D 4 HOH A 9 449 9 HOH WAT . D 4 HOH A 10 450 10 HOH WAT . D 4 HOH A 11 451 11 HOH WAT . D 4 HOH A 12 452 12 HOH WAT . D 4 HOH A 13 453 13 HOH WAT . D 4 HOH A 14 454 14 HOH WAT . D 4 HOH A 15 455 15 HOH WAT . D 4 HOH A 16 456 16 HOH WAT . D 4 HOH A 17 457 17 HOH WAT . D 4 HOH A 18 458 18 HOH WAT . D 4 HOH A 19 459 19 HOH WAT . D 4 HOH A 20 460 20 HOH WAT . D 4 HOH A 21 461 21 HOH WAT . D 4 HOH A 22 462 22 HOH WAT . D 4 HOH A 23 463 23 HOH WAT . D 4 HOH A 24 464 24 HOH WAT . D 4 HOH A 25 465 25 HOH WAT . D 4 HOH A 26 466 26 HOH WAT . D 4 HOH A 27 467 27 HOH WAT . D 4 HOH A 28 468 28 HOH WAT . D 4 HOH A 29 469 29 HOH WAT . D 4 HOH A 30 470 30 HOH WAT . D 4 HOH A 31 471 31 HOH WAT . D 4 HOH A 32 472 32 HOH WAT . D 4 HOH A 33 473 33 HOH WAT . D 4 HOH A 34 474 34 HOH WAT . D 4 HOH A 35 475 35 HOH WAT . D 4 HOH A 36 476 36 HOH WAT . D 4 HOH A 37 477 37 HOH WAT . D 4 HOH A 38 478 38 HOH WAT . D 4 HOH A 39 479 39 HOH WAT . D 4 HOH A 40 480 40 HOH WAT . D 4 HOH A 41 481 41 HOH WAT . D 4 HOH A 42 482 42 HOH WAT . D 4 HOH A 43 483 43 HOH WAT . D 4 HOH A 44 484 44 HOH WAT . D 4 HOH A 45 485 45 HOH WAT . D 4 HOH A 46 486 46 HOH WAT . D 4 HOH A 47 487 47 HOH WAT . D 4 HOH A 48 488 48 HOH WAT . D 4 HOH A 49 489 49 HOH WAT . D 4 HOH A 50 490 50 HOH WAT . D 4 HOH A 51 491 51 HOH WAT . D 4 HOH A 52 492 52 HOH WAT . D 4 HOH A 53 493 53 HOH WAT . D 4 HOH A 54 494 54 HOH WAT . D 4 HOH A 55 495 55 HOH WAT . D 4 HOH A 56 496 56 HOH WAT . D 4 HOH A 57 497 57 HOH WAT . D 4 HOH A 58 498 58 HOH WAT . D 4 HOH A 59 499 59 HOH WAT . D 4 HOH A 60 500 60 HOH WAT . D 4 HOH A 61 501 61 HOH WAT . D 4 HOH A 62 502 62 HOH WAT . D 4 HOH A 63 503 63 HOH WAT . D 4 HOH A 64 504 64 HOH WAT . D 4 HOH A 65 505 65 HOH WAT . D 4 HOH A 66 506 66 HOH WAT . D 4 HOH A 67 507 67 HOH WAT . D 4 HOH A 68 508 68 HOH WAT . D 4 HOH A 69 509 69 HOH WAT . D 4 HOH A 70 510 70 HOH WAT . D 4 HOH A 71 511 71 HOH WAT . D 4 HOH A 72 512 72 HOH WAT . D 4 HOH A 73 513 73 HOH WAT . D 4 HOH A 74 514 74 HOH WAT . D 4 HOH A 75 515 75 HOH WAT . D 4 HOH A 76 516 76 HOH WAT . D 4 HOH A 77 517 77 HOH WAT . D 4 HOH A 78 518 78 HOH WAT . D 4 HOH A 79 519 79 HOH WAT . D 4 HOH A 80 520 80 HOH WAT . D 4 HOH A 81 521 81 HOH WAT . D 4 HOH A 82 522 82 HOH WAT . D 4 HOH A 83 523 83 HOH WAT . D 4 HOH A 84 524 84 HOH WAT . D 4 HOH A 85 525 85 HOH WAT . D 4 HOH A 86 526 86 HOH WAT . D 4 HOH A 87 527 87 HOH WAT . D 4 HOH A 88 528 88 HOH WAT . D 4 HOH A 89 529 89 HOH WAT . D 4 HOH A 90 530 90 HOH WAT . D 4 HOH A 91 531 91 HOH WAT . D 4 HOH A 92 532 92 HOH WAT . D 4 HOH A 93 533 93 HOH WAT . D 4 HOH A 94 534 94 HOH WAT . D 4 HOH A 95 535 95 HOH WAT . D 4 HOH A 96 536 96 HOH WAT . D 4 HOH A 97 537 97 HOH WAT . D 4 HOH A 98 538 98 HOH WAT . D 4 HOH A 99 539 99 HOH WAT . D 4 HOH A 100 540 100 HOH WAT . D 4 HOH A 101 541 101 HOH WAT . D 4 HOH A 102 542 102 HOH WAT . D 4 HOH A 103 543 103 HOH WAT . D 4 HOH A 104 544 104 HOH WAT . D 4 HOH A 105 545 105 HOH WAT . D 4 HOH A 106 546 106 HOH WAT . D 4 HOH A 107 547 107 HOH WAT . D 4 HOH A 108 548 108 HOH WAT . D 4 HOH A 109 549 109 HOH WAT . D 4 HOH A 110 550 110 HOH WAT . D 4 HOH A 111 551 111 HOH WAT . D 4 HOH A 112 552 112 HOH WAT . D 4 HOH A 113 553 113 HOH WAT . D 4 HOH A 114 554 114 HOH WAT . D 4 HOH A 115 555 115 HOH WAT . D 4 HOH A 116 556 116 HOH WAT . D 4 HOH A 117 557 117 HOH WAT . D 4 HOH A 118 558 118 HOH WAT . D 4 HOH A 119 559 119 HOH WAT . D 4 HOH A 120 560 120 HOH WAT . D 4 HOH A 121 561 121 HOH WAT . D 4 HOH A 122 562 122 HOH WAT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . B 2 11.643 13.506 39.293 1 13.85 ? CHA HEM 430 A 1 HETATM 2 C CHB HEM . . . B 2 12.104 10.156 42.711 1 13.85 ? CHB HEM 430 A 1 HETATM 3 C CHC HEM . . . B 2 13.378 6.933 39.401 1 13.85 ? CHC HEM 430 A 1 HETATM 4 C CHD HEM . . . B 2 13.01 10.316 35.966 1 13.85 ? CHD HEM 430 A 1 HETATM 5 C C1A HEM . . . B 2 11.6 12.852 40.507 1 13.85 ? C1A HEM 430 A 1 HETATM 6 C C2A HEM . . . B 2 11.286 13.497 41.762 1 13.85 ? C2A HEM 430 A 1 HETATM 7 C C3A HEM . . . B 2 11.451 12.557 42.728 1 13.85 ? C3A HEM 430 A 1 HETATM 8 C C4A HEM . . . B 2 11.859 11.348 42.056 1 13.85 ? C4A HEM 430 A 1 HETATM 9 C CMA HEM . . . B 2 11.293 12.742 44.246 1 13.91 ? CMA HEM 430 A 1 HETATM 10 C CAA HEM . . . B 2 10.928 14.973 41.975 1 13.91 ? CAA HEM 430 A 1 HETATM 11 C CBA HEM . . . B 2 12.033 15.804 42.622 1 13.91 ? CBA HEM 430 A 1 HETATM 12 C CGA HEM . . . B 2 11.606 17.236 42.921 1 13.91 ? CGA HEM 430 A 1 HETATM 13 O O1A HEM . . . B 2 10.402 17.49 43.131 1 13.91 ? O1A HEM 430 A 1 HETATM 14 O O2A HEM . . . B 2 12.48 18.112 42.945 1 13.91 ? O2A HEM 430 A 1 HETATM 15 C C1B HEM . . . B 2 12.423 8.954 42.115 1 13.85 ? C1B HEM 430 A 1 HETATM 16 C C2B HEM . . . B 2 12.555 7.688 42.832 1 13.85 ? C2B HEM 430 A 1 HETATM 17 C C3B HEM . . . B 2 12.927 6.763 41.874 1 13.85 ? C3B HEM 430 A 1 HETATM 18 C C4B HEM . . . B 2 12.958 7.485 40.607 1 13.85 ? C4B HEM 430 A 1 HETATM 19 C CMB HEM . . . B 2 12.185 7.446 44.31 1 13.91 ? CMB HEM 430 A 1 HETATM 20 C CAB HEM . . . B 2 13.216 5.4 41.993 1 13.91 ? CAB HEM 430 A 1 HETATM 21 C CBB HEM . . . B 2 12.902 4.477 43.076 1 13.91 ? CBB HEM 430 A 1 HETATM 22 C C1C HEM . . . B 2 13.534 7.599 38.191 1 13.85 ? C1C HEM 430 A 1 HETATM 23 C C2C HEM . . . B 2 13.976 6.984 36.954 1 13.85 ? C2C HEM 430 A 1 HETATM 24 C C3C HEM . . . B 2 13.901 7.939 35.971 1 13.85 ? C3C HEM 430 A 1 HETATM 25 C C4C HEM . . . B 2 13.379 9.127 36.63 1 13.85 ? C4C HEM 430 A 1 HETATM 26 C CMC HEM . . . B 2 14.382 5.531 36.841 1 13.91 ? CMC HEM 430 A 1 HETATM 27 C CAC HEM . . . B 2 14.252 7.911 34.626 1 13.91 ? CAC HEM 430 A 1 HETATM 28 C CBC HEM . . . B 2 15.11 6.993 33.945 1 13.91 ? CBC HEM 430 A 1 HETATM 29 C C1D HEM . . . B 2 12.439 11.452 36.552 1 13.85 ? C1D HEM 430 A 1 HETATM 30 C C2D HEM . . . B 2 12.198 12.687 35.851 1 13.85 ? C2D HEM 430 A 1 HETATM 31 C C3D HEM . . . B 2 11.92 13.603 36.784 1 13.85 ? C3D HEM 430 A 1 HETATM 32 C C4D HEM . . . B 2 11.951 12.923 38.077 1 13.85 ? C4D HEM 430 A 1 HETATM 33 C CMD HEM . . . B 2 12.265 12.944 34.362 1 13.91 ? CMD HEM 430 A 1 HETATM 34 C CAD HEM . . . B 2 11.684 15.074 36.533 1 13.91 ? CAD HEM 430 A 1 HETATM 35 C CBD HEM . . . B 2 10.25 15.544 36.64 1 13.91 ? CBD HEM 430 A 1 HETATM 36 C CGD HEM . . . B 2 10.145 17.062 36.704 1 13.91 ? CGD HEM 430 A 1 HETATM 37 O O1D HEM . . . B 2 9.135 17.618 36.212 1 13.91 ? O1D HEM 430 A 1 HETATM 38 O O2D HEM . . . B 2 11.08 17.695 37.252 1 13.91 ? O2D HEM 430 A 1 HETATM 39 N NA HEM . . . B 2 11.938 11.528 40.69 1 13.85 ? NA HEM 430 A 1 HETATM 40 N NB HEM . . . B 2 12.632 8.809 40.761 1 13.85 ? NB HEM 430 A 1 HETATM 41 N NC HEM . . . B 2 13.186 8.924 37.997 1 13.85 ? NC HEM 430 A 1 HETATM 42 N ND HEM . . . B 2 12.253 11.59 37.917 1 13.85 ? ND HEM 430 A 1 HETATM 43 FE FE HEM . . . B 2 12.468 10.202 39.331 1 13.85 ? FE HEM 430 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 315 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 43 #