data_1P33 # _model_server_result.job_id yOO3D48lvzdh18IjhPDJkw _model_server_result.datetime_utc '2025-02-23 02:30:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1p33 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":352}' # _entry.id 1P33 # _exptl.entry_id 1P33 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 454.439 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description METHOTREXATE _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1P33 _cell.length_a 91.301 _cell.length_b 96.103 _cell.length_c 195.545 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1P33 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 F N N ? 3 H N N ? 3 J N N ? 3 L N N # _chem_comp.formula 'C20 H22 N8 O5' _chem_comp.formula_weight 454.439 _chem_comp.id MTX _chem_comp.mon_nstd_flag . _chem_comp.name METHOTREXATE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 MTX doub 237 n y N1 C8A MTX sing 238 n y C2 NA2 MTX sing 239 n n C2 N3 MTX sing 240 n y NA2 HN21 MTX sing 241 n n NA2 HN22 MTX sing 242 n n N3 C4 MTX doub 243 n y C4 NA4 MTX sing 244 n n C4 C4A MTX sing 245 n y NA4 HN41 MTX sing 246 n n NA4 HN42 MTX sing 247 n n C4A N5 MTX sing 248 n y C4A C8A MTX doub 249 n y N5 C6 MTX doub 250 n y C6 C7 MTX sing 251 n y C6 C9 MTX sing 252 n n C7 N8 MTX doub 253 n y C7 H7 MTX sing 254 n n N8 C8A MTX sing 255 n y C9 N10 MTX sing 256 n n C9 H91 MTX sing 257 n n C9 H92 MTX sing 258 n n N10 CM MTX sing 259 n n N10 C14 MTX sing 260 n n CM HM1 MTX sing 261 n n CM HM2 MTX sing 262 n n CM HM3 MTX sing 263 n n C11 C12 MTX doub 264 n y C11 C16 MTX sing 265 n y C11 C MTX sing 266 n n C12 C13 MTX sing 267 n y C12 H12 MTX sing 268 n n C13 C14 MTX doub 269 n y C13 H13 MTX sing 270 n n C14 C15 MTX sing 271 n y C15 C16 MTX doub 272 n y C15 H15 MTX sing 273 n n C16 H16 MTX sing 274 n n C O MTX doub 275 n n C N MTX sing 276 n n N CA MTX sing 277 n n N HN MTX sing 278 n n CA CT MTX sing 279 n n CA CB MTX sing 280 n n CA HA MTX sing 281 n n CT O1 MTX doub 282 n n CT O2 MTX sing 283 n n O2 HO2 MTX sing 284 n n CB CG MTX sing 285 n n CB HB1 MTX sing 286 n n CB HB2 MTX sing 287 n n CG CD MTX sing 288 n n CG HG1 MTX sing 289 n n CG HG2 MTX sing 290 n n CD OE1 MTX doub 291 n n CD OE2 MTX sing 292 n n OE2 HOE2 MTX sing 293 n n # _atom_sites.entry_id 1P33 _atom_sites.fract_transf_matrix[1][1] 0.010953 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010406 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005114 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 NDP A 1 300 300 NDP NDP . F 3 MTX A 1 351 351 MTX MTX . G 2 NDP B 1 301 301 NDP NDP . H 3 MTX B 1 352 352 MTX MTX . I 2 NDP C 1 302 302 NDP NDP . J 3 MTX C 1 353 353 MTX MTX . K 2 NDP D 1 303 303 NDP NDP . L 3 MTX D 1 354 354 MTX MTX . M 4 HOH A 1 400 400 HOH HOH . M 4 HOH A 2 401 401 HOH HOH . M 4 HOH A 3 402 402 HOH HOH . M 4 HOH A 4 403 403 HOH HOH . M 4 HOH A 5 410 410 HOH HOH . M 4 HOH A 6 415 415 HOH HOH . M 4 HOH A 7 418 418 HOH HOH . M 4 HOH A 8 419 419 HOH HOH . M 4 HOH A 9 420 420 HOH HOH . M 4 HOH A 10 435 435 HOH HOH . M 4 HOH A 11 439 439 HOH HOH . M 4 HOH A 12 441 441 HOH HOH . M 4 HOH A 13 446 446 HOH HOH . M 4 HOH A 14 447 447 HOH HOH . M 4 HOH A 15 449 449 HOH HOH . M 4 HOH A 16 450 450 HOH HOH . M 4 HOH A 17 454 454 HOH HOH . M 4 HOH A 18 463 463 HOH HOH . M 4 HOH A 19 464 464 HOH HOH . M 4 HOH A 20 465 465 HOH HOH . M 4 HOH A 21 468 468 HOH HOH . M 4 HOH A 22 473 473 HOH HOH . M 4 HOH A 23 483 483 HOH HOH . M 4 HOH A 24 484 484 HOH HOH . M 4 HOH A 25 486 486 HOH HOH . M 4 HOH A 26 493 493 HOH HOH . M 4 HOH A 27 495 495 HOH HOH . M 4 HOH A 28 496 496 HOH HOH . M 4 HOH A 29 497 497 HOH HOH . M 4 HOH A 30 507 507 HOH HOH . M 4 HOH A 31 508 508 HOH HOH . M 4 HOH A 32 510 510 HOH HOH . M 4 HOH A 33 515 515 HOH HOH . M 4 HOH A 34 520 520 HOH HOH . M 4 HOH A 35 528 528 HOH HOH . M 4 HOH A 36 529 529 HOH HOH . M 4 HOH A 37 531 531 HOH HOH . M 4 HOH A 38 536 536 HOH HOH . M 4 HOH A 39 539 539 HOH HOH . M 4 HOH A 40 540 540 HOH HOH . M 4 HOH A 41 541 541 HOH HOH . M 4 HOH A 42 545 545 HOH HOH . M 4 HOH A 43 546 546 HOH HOH . M 4 HOH A 44 551 551 HOH HOH . M 4 HOH A 45 553 553 HOH HOH . M 4 HOH A 46 554 554 HOH HOH . M 4 HOH A 47 562 562 HOH HOH . M 4 HOH A 48 565 565 HOH HOH . M 4 HOH A 49 569 569 HOH HOH . M 4 HOH A 50 572 572 HOH HOH . M 4 HOH A 51 573 573 HOH HOH . M 4 HOH A 52 574 574 HOH HOH . N 4 HOH B 1 404 404 HOH HOH . N 4 HOH B 2 406 406 HOH HOH . N 4 HOH B 3 408 408 HOH HOH . N 4 HOH B 4 409 409 HOH HOH . N 4 HOH B 5 411 411 HOH HOH . N 4 HOH B 6 412 412 HOH HOH . N 4 HOH B 7 413 413 HOH HOH . N 4 HOH B 8 416 416 HOH HOH . N 4 HOH B 9 421 421 HOH HOH . N 4 HOH B 10 424 424 HOH HOH . N 4 HOH B 11 425 425 HOH HOH . N 4 HOH B 12 426 426 HOH HOH . N 4 HOH B 13 427 427 HOH HOH . N 4 HOH B 14 431 431 HOH HOH . N 4 HOH B 15 433 433 HOH HOH . N 4 HOH B 16 436 436 HOH HOH . N 4 HOH B 17 438 438 HOH HOH . N 4 HOH B 18 442 442 HOH HOH . N 4 HOH B 19 444 444 HOH HOH . N 4 HOH B 20 445 445 HOH HOH . N 4 HOH B 21 453 453 HOH HOH . N 4 HOH B 22 456 456 HOH HOH . N 4 HOH B 23 459 459 HOH HOH . N 4 HOH B 24 460 460 HOH HOH . N 4 HOH B 25 462 462 HOH HOH . N 4 HOH B 26 466 466 HOH HOH . N 4 HOH B 27 467 467 HOH HOH . N 4 HOH B 28 472 472 HOH HOH . N 4 HOH B 29 474 474 HOH HOH . N 4 HOH B 30 475 475 HOH HOH . N 4 HOH B 31 477 477 HOH HOH . N 4 HOH B 32 478 478 HOH HOH . N 4 HOH B 33 481 481 HOH HOH . N 4 HOH B 34 485 485 HOH HOH . N 4 HOH B 35 488 488 HOH HOH . N 4 HOH B 36 489 489 HOH HOH . N 4 HOH B 37 490 490 HOH HOH . N 4 HOH B 38 491 491 HOH HOH . N 4 HOH B 39 501 501 HOH HOH . N 4 HOH B 40 504 504 HOH HOH . N 4 HOH B 41 518 518 HOH HOH . N 4 HOH B 42 521 521 HOH HOH . N 4 HOH B 43 524 524 HOH HOH . N 4 HOH B 44 525 525 HOH HOH . N 4 HOH B 45 530 530 HOH HOH . N 4 HOH B 46 537 537 HOH HOH . N 4 HOH B 47 538 538 HOH HOH . N 4 HOH B 48 542 542 HOH HOH . N 4 HOH B 49 548 548 HOH HOH . N 4 HOH B 50 558 558 HOH HOH . N 4 HOH B 51 561 561 HOH HOH . N 4 HOH B 52 564 564 HOH HOH . N 4 HOH B 53 570 570 HOH HOH . O 4 HOH C 1 405 405 HOH HOH . O 4 HOH C 2 407 407 HOH HOH . O 4 HOH C 3 414 414 HOH HOH . O 4 HOH C 4 422 422 HOH HOH . O 4 HOH C 5 429 429 HOH HOH . O 4 HOH C 6 430 430 HOH HOH . O 4 HOH C 7 432 432 HOH HOH . O 4 HOH C 8 434 434 HOH HOH . O 4 HOH C 9 437 437 HOH HOH . O 4 HOH C 10 443 443 HOH HOH . O 4 HOH C 11 448 448 HOH HOH . O 4 HOH C 12 452 452 HOH HOH . O 4 HOH C 13 455 455 HOH HOH . O 4 HOH C 14 457 457 HOH HOH . O 4 HOH C 15 458 458 HOH HOH . O 4 HOH C 16 469 469 HOH HOH . O 4 HOH C 17 470 470 HOH HOH . O 4 HOH C 18 471 471 HOH HOH . O 4 HOH C 19 476 476 HOH HOH . O 4 HOH C 20 480 480 HOH HOH . O 4 HOH C 21 482 482 HOH HOH . O 4 HOH C 22 492 492 HOH HOH . O 4 HOH C 23 499 499 HOH HOH . O 4 HOH C 24 500 500 HOH HOH . O 4 HOH C 25 502 502 HOH HOH . O 4 HOH C 26 503 503 HOH HOH . O 4 HOH C 27 505 505 HOH HOH . O 4 HOH C 28 511 511 HOH HOH . O 4 HOH C 29 513 513 HOH HOH . O 4 HOH C 30 514 514 HOH HOH . O 4 HOH C 31 517 517 HOH HOH . O 4 HOH C 32 519 519 HOH HOH . O 4 HOH C 33 532 532 HOH HOH . O 4 HOH C 34 534 534 HOH HOH . O 4 HOH C 35 535 535 HOH HOH . O 4 HOH C 36 543 543 HOH HOH . O 4 HOH C 37 544 544 HOH HOH . O 4 HOH C 38 550 550 HOH HOH . O 4 HOH C 39 552 552 HOH HOH . O 4 HOH C 40 556 556 HOH HOH . O 4 HOH C 41 568 568 HOH HOH . O 4 HOH C 42 571 571 HOH HOH . P 4 HOH D 1 417 417 HOH HOH . P 4 HOH D 2 428 428 HOH HOH . P 4 HOH D 3 440 440 HOH HOH . P 4 HOH D 4 451 451 HOH HOH . P 4 HOH D 5 461 461 HOH HOH . P 4 HOH D 6 479 479 HOH HOH . P 4 HOH D 7 487 487 HOH HOH . P 4 HOH D 8 494 494 HOH HOH . P 4 HOH D 9 498 498 HOH HOH . P 4 HOH D 10 506 506 HOH HOH . P 4 HOH D 11 509 509 HOH HOH . P 4 HOH D 12 512 512 HOH HOH . P 4 HOH D 13 516 516 HOH HOH . P 4 HOH D 14 522 522 HOH HOH . P 4 HOH D 15 523 523 HOH HOH . P 4 HOH D 16 526 526 HOH HOH . P 4 HOH D 17 527 527 HOH HOH . P 4 HOH D 18 547 547 HOH HOH . P 4 HOH D 19 549 549 HOH HOH . P 4 HOH D 20 555 555 HOH HOH . P 4 HOH D 21 557 557 HOH HOH . P 4 HOH D 22 559 559 HOH HOH . P 4 HOH D 23 560 560 HOH HOH . P 4 HOH D 24 563 563 HOH HOH . P 4 HOH D 25 566 566 HOH HOH . P 4 HOH D 26 567 567 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 MTX . . . H 3 50.692 28.037 34.706 1 136.95 ? N1 MTX 352 B 1 HETATM 2 C C2 MTX . . . H 3 50.139 28.073 33.435 1 136.36 ? C2 MTX 352 B 1 HETATM 3 N NA2 MTX . . . H 3 50.844 28.564 32.355 1 136.01 ? NA2 MTX 352 B 1 HETATM 4 N N3 MTX . . . H 3 48.816 27.686 33.29 1 136.28 ? N3 MTX 352 B 1 HETATM 5 C C4 MTX . . . H 3 48.006 27.282 34.385 1 136.43 ? C4 MTX 352 B 1 HETATM 6 N NA4 MTX . . . H 3 46.714 26.929 34.209 1 135.56 ? NA4 MTX 352 B 1 HETATM 7 C C4A MTX . . . H 3 48.558 27.258 35.703 1 137.13 ? C4A MTX 352 B 1 HETATM 8 N N5 MTX . . . H 3 47.808 26.886 36.831 1 138.09 ? N5 MTX 352 B 1 HETATM 9 C C6 MTX . . . H 3 48.351 26.908 38.125 1 138.87 ? C6 MTX 352 B 1 HETATM 10 C C7 MTX . . . H 3 49.856 27.175 38.304 1 138.39 ? C7 MTX 352 B 1 HETATM 11 N N8 MTX . . . H 3 50.566 27.627 37.042 1 137.58 ? N8 MTX 352 B 1 HETATM 12 C C8A MTX . . . H 3 49.947 27.645 35.818 1 137.25 ? C8A MTX 352 B 1 HETATM 13 C C9 MTX . . . H 3 47.58 26.727 39.451 1 139.73 ? C9 MTX 352 B 1 HETATM 14 N N10 MTX . . . H 3 45.997 26.463 39.658 1 140.35 ? N10 MTX 352 B 1 HETATM 15 C CM MTX . . . H 3 46.564 25.122 39.331 1 140.32 ? CM MTX 352 B 1 HETATM 16 C C11 MTX . . . H 3 44.834 30.643 40.753 1 143.07 ? C11 MTX 352 B 1 HETATM 17 C C12 MTX . . . H 3 46.178 30.313 40.888 1 142.35 ? C12 MTX 352 B 1 HETATM 18 C C13 MTX . . . H 3 46.666 28.969 40.547 1 141.79 ? C13 MTX 352 B 1 HETATM 19 C C14 MTX . . . H 3 45.755 27.885 40.082 1 141.08 ? C14 MTX 352 B 1 HETATM 20 C C15 MTX . . . H 3 44.353 28.273 39.988 1 141.46 ? C15 MTX 352 B 1 HETATM 21 C C16 MTX . . . H 3 43.87 29.626 40.276 1 142.52 ? C16 MTX 352 B 1 HETATM 22 C C MTX . . . H 3 44.429 32.066 41.045 1 143.92 ? C MTX 352 B 1 HETATM 23 O O MTX . . . H 3 43.287 32.345 40.912 1 144.24 ? O MTX 352 B 1 HETATM 24 N N MTX . . . H 3 45.322 33.083 41.432 1 144.52 ? N MTX 352 B 1 HETATM 25 C CA MTX . . . H 3 45.11 34.588 41.717 1 144.73 ? CA MTX 352 B 1 HETATM 26 C CT MTX . . . H 3 46.47 35.217 42.219 1 144.97 ? CT MTX 352 B 1 HETATM 27 O O1 MTX . . . H 3 46.794 35.118 43.462 1 145.13 ? O1 MTX 352 B 1 HETATM 28 O O2 MTX . . . H 3 47.239 35.709 41.365 1 144.93 ? O2 MTX 352 B 1 HETATM 29 C CB MTX . . . H 3 43.889 34.768 42.672 1 144.61 ? CB MTX 352 B 1 HETATM 30 C CG MTX . . . H 3 42.432 34.559 42.072 1 143.95 ? CG MTX 352 B 1 HETATM 31 C CD MTX . . . H 3 41.707 35.642 41.155 1 143.68 ? CD MTX 352 B 1 HETATM 32 O OE1 MTX . . . H 3 42.364 36.337 40.073 1 143.25 ? OE1 MTX 352 B 1 HETATM 33 O OE2 MTX . . . H 3 40.494 35.856 41.376 1 143.1 ? OE2 MTX 352 B 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 366 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 33 #