data_1P33
#
_model_server_result.job_id            F369RPwkCdkJ4Z9govFi4A 
_model_server_result.datetime_utc      '2025-02-23 02:36:37' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1p33 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"L","auth_seq_id":354}' 
#
_entry.id    1P33 
#
_exptl.entry_id    1P33 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              454.439 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            METHOTREXATE 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1P33 
_cell.length_a            91.301 
_cell.length_b            96.103 
_cell.length_c            195.545 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1P33 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 F N N 
? 3 H N N 
? 3 J N N 
? 3 L N N 
#
_chem_comp.formula           'C20 H22 N8 O5' 
_chem_comp.formula_weight    454.439 
_chem_comp.id                MTX 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              METHOTREXATE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 MTX doub 237 n y 
N1 C8A MTX sing 238 n y 
C2 NA2 MTX sing 239 n n 
C2 N3 MTX sing 240 n y 
NA2 HN21 MTX sing 241 n n 
NA2 HN22 MTX sing 242 n n 
N3 C4 MTX doub 243 n y 
C4 NA4 MTX sing 244 n n 
C4 C4A MTX sing 245 n y 
NA4 HN41 MTX sing 246 n n 
NA4 HN42 MTX sing 247 n n 
C4A N5 MTX sing 248 n y 
C4A C8A MTX doub 249 n y 
N5 C6 MTX doub 250 n y 
C6 C7 MTX sing 251 n y 
C6 C9 MTX sing 252 n n 
C7 N8 MTX doub 253 n y 
C7 H7 MTX sing 254 n n 
N8 C8A MTX sing 255 n y 
C9 N10 MTX sing 256 n n 
C9 H91 MTX sing 257 n n 
C9 H92 MTX sing 258 n n 
N10 CM MTX sing 259 n n 
N10 C14 MTX sing 260 n n 
CM HM1 MTX sing 261 n n 
CM HM2 MTX sing 262 n n 
CM HM3 MTX sing 263 n n 
C11 C12 MTX doub 264 n y 
C11 C16 MTX sing 265 n y 
C11 C MTX sing 266 n n 
C12 C13 MTX sing 267 n y 
C12 H12 MTX sing 268 n n 
C13 C14 MTX doub 269 n y 
C13 H13 MTX sing 270 n n 
C14 C15 MTX sing 271 n y 
C15 C16 MTX doub 272 n y 
C15 H15 MTX sing 273 n n 
C16 H16 MTX sing 274 n n 
C O MTX doub 275 n n 
C N MTX sing 276 n n 
N CA MTX sing 277 n n 
N HN MTX sing 278 n n 
CA CT MTX sing 279 n n 
CA CB MTX sing 280 n n 
CA HA MTX sing 281 n n 
CT O1 MTX doub 282 n n 
CT O2 MTX sing 283 n n 
O2 HO2 MTX sing 284 n n 
CB CG MTX sing 285 n n 
CB HB1 MTX sing 286 n n 
CB HB2 MTX sing 287 n n 
CG CD MTX sing 288 n n 
CG HG1 MTX sing 289 n n 
CG HG2 MTX sing 290 n n 
CD OE1 MTX doub 291 n n 
CD OE2 MTX sing 292 n n 
OE2 HOE2 MTX sing 293 n n 
#
_atom_sites.entry_id                     1P33 
_atom_sites.fract_transf_matrix[1][1]    0.010953 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010406 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005114 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 NDP A 1 300 300 NDP NDP . 
F 3 MTX A 1 351 351 MTX MTX . 
G 2 NDP B 1 301 301 NDP NDP . 
H 3 MTX B 1 352 352 MTX MTX . 
I 2 NDP C 1 302 302 NDP NDP . 
J 3 MTX C 1 353 353 MTX MTX . 
K 2 NDP D 1 303 303 NDP NDP . 
L 3 MTX D 1 354 354 MTX MTX . 
M 4 HOH A 1 400 400 HOH HOH . 
M 4 HOH A 2 401 401 HOH HOH . 
M 4 HOH A 3 402 402 HOH HOH . 
M 4 HOH A 4 403 403 HOH HOH . 
M 4 HOH A 5 410 410 HOH HOH . 
M 4 HOH A 6 415 415 HOH HOH . 
M 4 HOH A 7 418 418 HOH HOH . 
M 4 HOH A 8 419 419 HOH HOH . 
M 4 HOH A 9 420 420 HOH HOH . 
M 4 HOH A 10 435 435 HOH HOH . 
M 4 HOH A 11 439 439 HOH HOH . 
M 4 HOH A 12 441 441 HOH HOH . 
M 4 HOH A 13 446 446 HOH HOH . 
M 4 HOH A 14 447 447 HOH HOH . 
M 4 HOH A 15 449 449 HOH HOH . 
M 4 HOH A 16 450 450 HOH HOH . 
M 4 HOH A 17 454 454 HOH HOH . 
M 4 HOH A 18 463 463 HOH HOH . 
M 4 HOH A 19 464 464 HOH HOH . 
M 4 HOH A 20 465 465 HOH HOH . 
M 4 HOH A 21 468 468 HOH HOH . 
M 4 HOH A 22 473 473 HOH HOH . 
M 4 HOH A 23 483 483 HOH HOH . 
M 4 HOH A 24 484 484 HOH HOH . 
M 4 HOH A 25 486 486 HOH HOH . 
M 4 HOH A 26 493 493 HOH HOH . 
M 4 HOH A 27 495 495 HOH HOH . 
M 4 HOH A 28 496 496 HOH HOH . 
M 4 HOH A 29 497 497 HOH HOH . 
M 4 HOH A 30 507 507 HOH HOH . 
M 4 HOH A 31 508 508 HOH HOH . 
M 4 HOH A 32 510 510 HOH HOH . 
M 4 HOH A 33 515 515 HOH HOH . 
M 4 HOH A 34 520 520 HOH HOH . 
M 4 HOH A 35 528 528 HOH HOH . 
M 4 HOH A 36 529 529 HOH HOH . 
M 4 HOH A 37 531 531 HOH HOH . 
M 4 HOH A 38 536 536 HOH HOH . 
M 4 HOH A 39 539 539 HOH HOH . 
M 4 HOH A 40 540 540 HOH HOH . 
M 4 HOH A 41 541 541 HOH HOH . 
M 4 HOH A 42 545 545 HOH HOH . 
M 4 HOH A 43 546 546 HOH HOH . 
M 4 HOH A 44 551 551 HOH HOH . 
M 4 HOH A 45 553 553 HOH HOH . 
M 4 HOH A 46 554 554 HOH HOH . 
M 4 HOH A 47 562 562 HOH HOH . 
M 4 HOH A 48 565 565 HOH HOH . 
M 4 HOH A 49 569 569 HOH HOH . 
M 4 HOH A 50 572 572 HOH HOH . 
M 4 HOH A 51 573 573 HOH HOH . 
M 4 HOH A 52 574 574 HOH HOH . 
N 4 HOH B 1 404 404 HOH HOH . 
N 4 HOH B 2 406 406 HOH HOH . 
N 4 HOH B 3 408 408 HOH HOH . 
N 4 HOH B 4 409 409 HOH HOH . 
N 4 HOH B 5 411 411 HOH HOH . 
N 4 HOH B 6 412 412 HOH HOH . 
N 4 HOH B 7 413 413 HOH HOH . 
N 4 HOH B 8 416 416 HOH HOH . 
N 4 HOH B 9 421 421 HOH HOH . 
N 4 HOH B 10 424 424 HOH HOH . 
N 4 HOH B 11 425 425 HOH HOH . 
N 4 HOH B 12 426 426 HOH HOH . 
N 4 HOH B 13 427 427 HOH HOH . 
N 4 HOH B 14 431 431 HOH HOH . 
N 4 HOH B 15 433 433 HOH HOH . 
N 4 HOH B 16 436 436 HOH HOH . 
N 4 HOH B 17 438 438 HOH HOH . 
N 4 HOH B 18 442 442 HOH HOH . 
N 4 HOH B 19 444 444 HOH HOH . 
N 4 HOH B 20 445 445 HOH HOH . 
N 4 HOH B 21 453 453 HOH HOH . 
N 4 HOH B 22 456 456 HOH HOH . 
N 4 HOH B 23 459 459 HOH HOH . 
N 4 HOH B 24 460 460 HOH HOH . 
N 4 HOH B 25 462 462 HOH HOH . 
N 4 HOH B 26 466 466 HOH HOH . 
N 4 HOH B 27 467 467 HOH HOH . 
N 4 HOH B 28 472 472 HOH HOH . 
N 4 HOH B 29 474 474 HOH HOH . 
N 4 HOH B 30 475 475 HOH HOH . 
N 4 HOH B 31 477 477 HOH HOH . 
N 4 HOH B 32 478 478 HOH HOH . 
N 4 HOH B 33 481 481 HOH HOH . 
N 4 HOH B 34 485 485 HOH HOH . 
N 4 HOH B 35 488 488 HOH HOH . 
N 4 HOH B 36 489 489 HOH HOH . 
N 4 HOH B 37 490 490 HOH HOH . 
N 4 HOH B 38 491 491 HOH HOH . 
N 4 HOH B 39 501 501 HOH HOH . 
N 4 HOH B 40 504 504 HOH HOH . 
N 4 HOH B 41 518 518 HOH HOH . 
N 4 HOH B 42 521 521 HOH HOH . 
N 4 HOH B 43 524 524 HOH HOH . 
N 4 HOH B 44 525 525 HOH HOH . 
N 4 HOH B 45 530 530 HOH HOH . 
N 4 HOH B 46 537 537 HOH HOH . 
N 4 HOH B 47 538 538 HOH HOH . 
N 4 HOH B 48 542 542 HOH HOH . 
N 4 HOH B 49 548 548 HOH HOH . 
N 4 HOH B 50 558 558 HOH HOH . 
N 4 HOH B 51 561 561 HOH HOH . 
N 4 HOH B 52 564 564 HOH HOH . 
N 4 HOH B 53 570 570 HOH HOH . 
O 4 HOH C 1 405 405 HOH HOH . 
O 4 HOH C 2 407 407 HOH HOH . 
O 4 HOH C 3 414 414 HOH HOH . 
O 4 HOH C 4 422 422 HOH HOH . 
O 4 HOH C 5 429 429 HOH HOH . 
O 4 HOH C 6 430 430 HOH HOH . 
O 4 HOH C 7 432 432 HOH HOH . 
O 4 HOH C 8 434 434 HOH HOH . 
O 4 HOH C 9 437 437 HOH HOH . 
O 4 HOH C 10 443 443 HOH HOH . 
O 4 HOH C 11 448 448 HOH HOH . 
O 4 HOH C 12 452 452 HOH HOH . 
O 4 HOH C 13 455 455 HOH HOH . 
O 4 HOH C 14 457 457 HOH HOH . 
O 4 HOH C 15 458 458 HOH HOH . 
O 4 HOH C 16 469 469 HOH HOH . 
O 4 HOH C 17 470 470 HOH HOH . 
O 4 HOH C 18 471 471 HOH HOH . 
O 4 HOH C 19 476 476 HOH HOH . 
O 4 HOH C 20 480 480 HOH HOH . 
O 4 HOH C 21 482 482 HOH HOH . 
O 4 HOH C 22 492 492 HOH HOH . 
O 4 HOH C 23 499 499 HOH HOH . 
O 4 HOH C 24 500 500 HOH HOH . 
O 4 HOH C 25 502 502 HOH HOH . 
O 4 HOH C 26 503 503 HOH HOH . 
O 4 HOH C 27 505 505 HOH HOH . 
O 4 HOH C 28 511 511 HOH HOH . 
O 4 HOH C 29 513 513 HOH HOH . 
O 4 HOH C 30 514 514 HOH HOH . 
O 4 HOH C 31 517 517 HOH HOH . 
O 4 HOH C 32 519 519 HOH HOH . 
O 4 HOH C 33 532 532 HOH HOH . 
O 4 HOH C 34 534 534 HOH HOH . 
O 4 HOH C 35 535 535 HOH HOH . 
O 4 HOH C 36 543 543 HOH HOH . 
O 4 HOH C 37 544 544 HOH HOH . 
O 4 HOH C 38 550 550 HOH HOH . 
O 4 HOH C 39 552 552 HOH HOH . 
O 4 HOH C 40 556 556 HOH HOH . 
O 4 HOH C 41 568 568 HOH HOH . 
O 4 HOH C 42 571 571 HOH HOH . 
P 4 HOH D 1 417 417 HOH HOH . 
P 4 HOH D 2 428 428 HOH HOH . 
P 4 HOH D 3 440 440 HOH HOH . 
P 4 HOH D 4 451 451 HOH HOH . 
P 4 HOH D 5 461 461 HOH HOH . 
P 4 HOH D 6 479 479 HOH HOH . 
P 4 HOH D 7 487 487 HOH HOH . 
P 4 HOH D 8 494 494 HOH HOH . 
P 4 HOH D 9 498 498 HOH HOH . 
P 4 HOH D 10 506 506 HOH HOH . 
P 4 HOH D 11 509 509 HOH HOH . 
P 4 HOH D 12 512 512 HOH HOH . 
P 4 HOH D 13 516 516 HOH HOH . 
P 4 HOH D 14 522 522 HOH HOH . 
P 4 HOH D 15 523 523 HOH HOH . 
P 4 HOH D 16 526 526 HOH HOH . 
P 4 HOH D 17 527 527 HOH HOH . 
P 4 HOH D 18 547 547 HOH HOH . 
P 4 HOH D 19 549 549 HOH HOH . 
P 4 HOH D 20 555 555 HOH HOH . 
P 4 HOH D 21 557 557 HOH HOH . 
P 4 HOH D 22 559 559 HOH HOH . 
P 4 HOH D 23 560 560 HOH HOH . 
P 4 HOH D 24 563 563 HOH HOH . 
P 4 HOH D 25 566 566 HOH HOH . 
P 4 HOH D 26 567 567 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 MTX . . . L 3 32.459 33.737 6.487 1 129.14 ? N1 MTX 354 D 1 
HETATM 2 C C2 MTX . . . L 3 32.971 33.701 7.782 1 129 ? C2 MTX 354 D 1 
HETATM 3 N NA2 MTX . . . L 3 33.528 34.82 8.374 1 128.42 ? NA2 MTX 354 D 1 
HETATM 4 N N3 MTX . . . L 3 32.994 32.467 8.448 1 129.11 ? N3 MTX 354 D 1 
HETATM 5 C C4 MTX . . . L 3 32.54 31.242 7.84 1 129.04 ? C4 MTX 354 D 1 
HETATM 6 N NA4 MTX . . . L 3 32.599 30.073 8.521 1 127.74 ? NA4 MTX 354 D 1 
HETATM 7 C C4A MTX . . . L 3 32.019 31.276 6.48 1 129.49 ? C4A MTX 354 D 1 
HETATM 8 N N5 MTX . . . L 3 31.56 30.134 5.791 1 130.26 ? N5 MTX 354 D 1 
HETATM 9 C C6 MTX . . . L 3 31.1 30.216 4.458 1 131.28 ? C6 MTX 354 D 1 
HETATM 10 C C7 MTX . . . L 3 30.9 31.587 3.81 1 130.82 ? C7 MTX 354 D 1 
HETATM 11 N N8 MTX . . . L 3 31.494 32.745 4.59 1 130 ? N8 MTX 354 D 1 
HETATM 12 C C8A MTX . . . L 3 31.995 32.597 5.846 1 129.5 ? C8A MTX 354 D 1 
HETATM 13 C C9 MTX . . . L 3 30.776 29.036 3.524 1 132.59 ? C9 MTX 354 D 1 
HETATM 14 N N10 MTX . . . L 3 30.914 27.473 3.849 1 133.89 ? N10 MTX 354 D 1 
HETATM 15 C CM MTX . . . L 3 29.589 27.849 4.446 1 134.05 ? CM MTX 354 D 1 
HETATM 16 C C11 MTX . . . L 3 34.834 26.833 1.806 1 137.57 ? C11 MTX 354 D 1 
HETATM 17 C C12 MTX . . . L 3 34.088 27.924 1.402 1 136.51 ? C12 MTX 354 D 1 
HETATM 18 C C13 MTX . . . L 3 32.792 28.236 2.019 1 136 ? C13 MTX 354 D 1 
HETATM 19 C C14 MTX . . . L 3 32.193 27.357 3.082 1 135.04 ? C14 MTX 354 D 1 
HETATM 20 C C15 MTX . . . L 3 33 26.206 3.442 1 135.6 ? C15 MTX 354 D 1 
HETATM 21 C C16 MTX . . . L 3 34.313 25.925 2.858 1 136.82 ? C16 MTX 354 D 1 
HETATM 22 C C MTX . . . L 3 36.185 26.643 1.176 1 138.92 ? C MTX 354 D 1 
HETATM 23 O O MTX . . . L 3 36.831 25.713 1.533 1 139.58 ? O MTX 354 D 1 
HETATM 24 N N MTX . . . L 3 36.742 27.515 0.224 1 139.86 ? N MTX 354 D 1 
HETATM 25 C CA MTX . . . L 3 38.113 27.532 -0.487 1 139.89 ? CA MTX 354 D 1 
HETATM 26 C CT MTX . . . L 3 38.126 28.718 -1.531 1 139.53 ? CT MTX 354 D 1 
HETATM 27 O O1 MTX . . . L 3 37.615 28.544 -2.699 1 139.17 ? O1 MTX 354 D 1 
HETATM 28 O O2 MTX . . . L 3 38.55 29.825 -1.147 1 139.14 ? O2 MTX 354 D 1 
HETATM 29 C CB MTX . . . L 3 38.401 26.112 -1.084 1 140.32 ? CB MTX 354 D 1 
HETATM 30 C CG MTX . . . L 3 38.793 24.94 -0.087 1 139.99 ? CG MTX 354 D 1 
HETATM 31 C CD MTX . . . L 3 40.244 24.807 0.54 1 140.07 ? CD MTX 354 D 1 
HETATM 32 O OE1 MTX . . . L 3 40.977 25.927 1.08 1 139.88 ? OE1 MTX 354 D 1 
HETATM 33 O OE2 MTX . . . L 3 40.742 23.659 0.592 1 140.07 ? OE2 MTX 354 D 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    21 
_model_server_stats.query_time_ms           306 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           33 
#