data_1P3H # _model_server_result.job_id vmlMpDd8QG7I545JMls6Eg _model_server_result.datetime_utc '2025-07-02 00:39:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1p3h # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"GA","auth_seq_id":114}' # _entry.id 1P3H # _exptl.entry_id 1P3H _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 118.174 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (4S)-2-METHYL-2,4-PENTANEDIOL _entity.pdbx_number_of_molecules 18 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 106.78 _cell.angle_gamma 90 _cell.entry_id 1P3H _cell.length_a 76.46 _cell.length_b 87.93 _cell.length_c 124.39 _cell.Z_PDB 28 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1P3H _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA heptameric 7 author_and_software_defined_assembly 1 PISA heptameric 7 author_and_software_defined_assembly 2 PISA tetradecameric 14 software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,O,P,Q,R,S,T,U,V,W,HA,IA,JA,KA,LA,MA,NA 1 1 H,I,J,K,L,M,N,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,OA,PA,QA,RA,SA 2 1 A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 P N N ? 3 Q N N ? 3 R N N ? 3 S N N ? 3 T N N ? 3 U N N ? 3 V N N ? 3 W N N ? 3 X N N ? 3 Y N N ? 3 Z N N ? 3 AA N N ? 3 BA N N ? 3 CA N N ? 3 DA N N ? 3 EA N N ? 3 FA N N ? 3 GA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O ASP 53 A ASP 53 1_555 O CA CA . A CA 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.343 ? metalc ? metalc2 O CA CA . A CA 200 1_555 HA O HOH . A HOH 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.391 ? metalc ? metalc3 O CA CA . A CA 200 1_555 B OD1 ASP 51 B ASP 51 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.923 ? # _chem_comp.formula 'C6 H14 O2' _chem_comp.formula_weight 118.174 _chem_comp.id MPD _chem_comp.mon_nstd_flag . _chem_comp.name (4S)-2-METHYL-2,4-PENTANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 MPD sing 184 n n C1 H11 MPD sing 185 n n C1 H12 MPD sing 186 n n C1 H13 MPD sing 187 n n C2 O2 MPD sing 188 n n C2 CM MPD sing 189 n n C2 C3 MPD sing 190 n n O2 HO2 MPD sing 191 n n CM HM1 MPD sing 192 n n CM HM2 MPD sing 193 n n CM HM3 MPD sing 194 n n C3 C4 MPD sing 195 n n C3 H31 MPD sing 196 n n C3 H32 MPD sing 197 n n C4 O4 MPD sing 198 n n C4 C5 MPD sing 199 n n C4 H4 MPD sing 200 n n O4 HO4 MPD sing 201 n n C5 H51 MPD sing 202 n n C5 H52 MPD sing 203 n n C5 H53 MPD sing 204 n n # _atom_sites.entry_id 1P3H _atom_sites.fract_transf_matrix[1][1] 0.013079 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003944 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011373 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008397 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code O 2 CA A 1 200 1 CA CA . P 3 MPD A 1 101 1 MPD MPD . Q 3 MPD A 1 115 15 MPD MPD . R 3 MPD B 1 102 2 MPD MPD . S 3 MPD C 1 103 3 MPD MPD . T 3 MPD D 1 104 4 MPD MPD . U 3 MPD E 1 105 5 MPD MPD . V 3 MPD F 1 106 6 MPD MPD . W 3 MPD G 1 107 7 MPD MPD . X 3 MPD H 1 108 8 MPD MPD . Y 3 MPD H 1 116 16 MPD MPD . Z 3 MPD H 1 117 17 MPD MPD . AA 3 MPD H 1 118 18 MPD MPD . BA 3 MPD I 1 109 9 MPD MPD . CA 3 MPD J 1 110 10 MPD MPD . DA 3 MPD K 1 111 11 MPD MPD . EA 3 MPD L 1 112 12 MPD MPD . FA 3 MPD M 1 113 13 MPD MPD . GA 3 MPD N 1 114 14 MPD MPD . HA 4 HOH A 1 201 13 HOH HOH . HA 4 HOH A 2 202 25 HOH HOH . HA 4 HOH A 3 203 50 HOH HOH . HA 4 HOH A 4 204 54 HOH HOH . HA 4 HOH A 5 205 55 HOH HOH . HA 4 HOH A 6 206 56 HOH HOH . HA 4 HOH A 7 207 65 HOH HOH . IA 4 HOH B 1 103 14 HOH HOH . IA 4 HOH B 2 104 28 HOH HOH . JA 4 HOH C 1 104 4 HOH HOH . JA 4 HOH C 2 105 8 HOH HOH . JA 4 HOH C 3 106 9 HOH HOH . JA 4 HOH C 4 107 15 HOH HOH . JA 4 HOH C 5 108 30 HOH HOH . KA 4 HOH D 1 105 16 HOH HOH . KA 4 HOH D 2 106 17 HOH HOH . KA 4 HOH D 3 107 27 HOH HOH . KA 4 HOH D 4 108 29 HOH HOH . KA 4 HOH D 5 109 31 HOH HOH . KA 4 HOH D 6 110 33 HOH HOH . KA 4 HOH D 7 111 53 HOH HOH . LA 4 HOH E 1 106 32 HOH HOH . LA 4 HOH E 2 107 34 HOH HOH . LA 4 HOH E 3 108 35 HOH HOH . LA 4 HOH E 4 109 36 HOH HOH . LA 4 HOH E 5 110 37 HOH HOH . LA 4 HOH E 6 111 38 HOH HOH . LA 4 HOH E 7 112 39 HOH HOH . LA 4 HOH E 8 113 40 HOH HOH . LA 4 HOH E 9 114 41 HOH HOH . MA 4 HOH F 1 107 42 HOH HOH . MA 4 HOH F 2 108 43 HOH HOH . MA 4 HOH F 3 109 46 HOH HOH . MA 4 HOH F 4 110 47 HOH HOH . MA 4 HOH F 5 111 48 HOH HOH . MA 4 HOH F 6 112 49 HOH HOH . NA 4 HOH G 1 108 10 HOH HOH . NA 4 HOH G 2 109 11 HOH HOH . NA 4 HOH G 3 110 18 HOH HOH . NA 4 HOH G 4 111 19 HOH HOH . NA 4 HOH G 5 112 44 HOH HOH . NA 4 HOH G 6 113 45 HOH HOH . NA 4 HOH G 7 114 58 HOH HOH . NA 4 HOH G 8 115 59 HOH HOH . OA 4 HOH H 1 119 3 HOH HOH . OA 4 HOH H 2 120 12 HOH HOH . OA 4 HOH H 3 121 20 HOH HOH . OA 4 HOH H 4 122 26 HOH HOH . OA 4 HOH H 5 123 60 HOH HOH . OA 4 HOH H 6 124 61 HOH HOH . OA 4 HOH H 7 125 62 HOH HOH . OA 4 HOH H 8 126 63 HOH HOH . OA 4 HOH H 9 127 64 HOH HOH . PA 4 HOH I 1 110 57 HOH HOH . PA 4 HOH I 2 111 66 HOH HOH . QA 4 HOH J 1 111 21 HOH HOH . QA 4 HOH J 2 112 22 HOH HOH . RA 4 HOH K 1 112 6 HOH HOH . RA 4 HOH K 2 113 23 HOH HOH . RA 4 HOH K 3 114 52 HOH HOH . SA 4 HOH N 1 115 1 HOH HOH . SA 4 HOH N 2 116 5 HOH HOH . SA 4 HOH N 3 117 7 HOH HOH . SA 4 HOH N 4 118 24 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MPD . . . GA 3 -48.141 105.493 13.753 1 88.49 ? C1 MPD 114 N 1 HETATM 2 C C2 MPD . . . GA 3 -48.82 106.283 12.642 1 88.36 ? C2 MPD 114 N 1 HETATM 3 O O2 MPD . . . GA 3 -49.994 105.582 12.327 1 88.49 ? O2 MPD 114 N 1 HETATM 4 C CM MPD . . . GA 3 -49.16 107.658 13.093 1 88.33 ? CM MPD 114 N 1 HETATM 5 C C3 MPD . . . GA 3 -47.992 106.358 11.374 1 87.2 ? C3 MPD 114 N 1 HETATM 6 C C4 MPD . . . GA 3 -47.612 105.059 10.72 1 87.48 ? C4 MPD 114 N 1 HETATM 7 O O4 MPD . . . GA 3 -48.712 104.286 10.356 1 84.99 ? O4 MPD 114 N 1 HETATM 8 C C5 MPD . . . GA 3 -46.789 105.293 9.415 1 85.69 ? C5 MPD 114 N 1 # _model_server_stats.io_time_ms 125 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 221 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 8 #