data_1P3T # _model_server_result.job_id Ax788xMflCbxumKMpZK6Sw _model_server_result.datetime_utc '2024-12-04 18:57:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1p3t # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":300}' # _entry.id 1P3T # _exptl.entry_id 1P3T _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1P3T _cell.length_a 63.245 _cell.length_b 63.245 _cell.length_c 102.142 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1P3T _symmetry.cell_setting tetragonal _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id metalc _struct_conn.details ? _struct_conn.id metalc1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id NE2 _struct_conn.ptnr1_label_comp_id HIS _struct_conn.ptnr1_label_seq_id 23 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id HIS _struct_conn.ptnr1_auth_seq_id 23 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id FE _struct_conn.ptnr2_label_comp_id HEM _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id HEM _struct_conn.ptnr2_auth_seq_id 300 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.123 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 129 n n CHA C4D HEM doub 130 n n CHA HHA HEM sing 131 n n CHB C4A HEM sing 132 n n CHB C1B HEM doub 133 n n CHB HHB HEM sing 134 n n CHC C4B HEM sing 135 n n CHC C1C HEM doub 136 n n CHC HHC HEM sing 137 n n CHD C4C HEM doub 138 n n CHD C1D HEM sing 139 n n CHD HHD HEM sing 140 n n C1A C2A HEM doub 141 n y C1A NA HEM sing 142 n y C2A C3A HEM sing 143 n y C2A CAA HEM sing 144 n n C3A C4A HEM doub 145 n y C3A CMA HEM sing 146 n n C4A NA HEM sing 147 n y CMA HMA HEM sing 148 n n CMA HMAA HEM sing 149 n n CMA HMAB HEM sing 150 n n CAA CBA HEM sing 151 n n CAA HAA HEM sing 152 n n CAA HAAA HEM sing 153 n n CBA CGA HEM sing 154 n n CBA HBA HEM sing 155 n n CBA HBAA HEM sing 156 n n CGA O1A HEM doub 157 n n CGA O2A HEM sing 158 n n C1B C2B HEM sing 159 n n C1B NB HEM sing 160 n n C2B C3B HEM doub 161 n n C2B CMB HEM sing 162 n n C3B C4B HEM sing 163 n n C3B CAB HEM sing 164 n n C4B NB HEM doub 165 n n CMB HMB HEM sing 166 n n CMB HMBA HEM sing 167 n n CMB HMBB HEM sing 168 n n CAB CBB HEM doub 169 n n CAB HAB HEM sing 170 n n CBB HBB HEM sing 171 n n CBB HBBA HEM sing 172 n n C1C C2C HEM sing 173 n y C1C NC HEM sing 174 n y C2C C3C HEM doub 175 n y C2C CMC HEM sing 176 n n C3C C4C HEM sing 177 n y C3C CAC HEM sing 178 n n C4C NC HEM sing 179 n y CMC HMC HEM sing 180 n n CMC HMCA HEM sing 181 n n CMC HMCB HEM sing 182 n n CAC CBC HEM doub 183 n n CAC HAC HEM sing 184 n n CBC HBC HEM sing 185 n n CBC HBCA HEM sing 186 n n C1D C2D HEM sing 187 n n C1D ND HEM doub 188 n n C2D C3D HEM doub 189 n n C2D CMD HEM sing 190 n n C3D C4D HEM sing 191 n n C3D CAD HEM sing 192 n n C4D ND HEM sing 193 n n CMD HMD HEM sing 194 n n CMD HMDA HEM sing 195 n n CMD HMDB HEM sing 196 n n CAD CBD HEM sing 197 n n CAD HAD HEM sing 198 n n CAD HADA HEM sing 199 n n CBD CGD HEM sing 200 n n CBD HBD HEM sing 201 n n CBD HBDA HEM sing 202 n n CGD O1D HEM doub 203 n n CGD O2D HEM sing 204 n n O2A H2A HEM sing 205 n n O2D H2D HEM sing 206 n n FE NA HEM sing 207 n n FE NB HEM sing 208 n n FE NC HEM sing 209 n n FE ND HEM sing 210 n n # _atom_sites.entry_id 1P3T _atom_sites.fract_transf_matrix[1][1] 0.015812 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015812 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00979 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEM A 1 300 300 HEM HEM . C 3 HOH A 1 301 1 HOH HOH . C 3 HOH A 2 302 2 HOH HOH . C 3 HOH A 3 303 3 HOH HOH . C 3 HOH A 4 304 4 HOH HOH . C 3 HOH A 5 305 5 HOH HOH . C 3 HOH A 6 306 6 HOH HOH . C 3 HOH A 7 307 7 HOH HOH . C 3 HOH A 8 308 8 HOH HOH . C 3 HOH A 9 309 9 HOH HOH . C 3 HOH A 10 310 10 HOH HOH . C 3 HOH A 11 311 11 HOH HOH . C 3 HOH A 12 312 12 HOH HOH . C 3 HOH A 13 313 13 HOH HOH . C 3 HOH A 14 314 14 HOH HOH . C 3 HOH A 15 315 15 HOH HOH . C 3 HOH A 16 316 16 HOH HOH . C 3 HOH A 17 317 17 HOH HOH . C 3 HOH A 18 318 18 HOH HOH . C 3 HOH A 19 319 19 HOH HOH . C 3 HOH A 20 320 20 HOH HOH . C 3 HOH A 21 321 21 HOH HOH . C 3 HOH A 22 322 22 HOH HOH . C 3 HOH A 23 323 23 HOH HOH . C 3 HOH A 24 324 24 HOH HOH . C 3 HOH A 25 325 25 HOH HOH . C 3 HOH A 26 326 26 HOH HOH . C 3 HOH A 27 327 27 HOH HOH . C 3 HOH A 28 328 28 HOH HOH . C 3 HOH A 29 329 29 HOH HOH . C 3 HOH A 30 330 30 HOH HOH . C 3 HOH A 31 331 31 HOH HOH . C 3 HOH A 32 332 32 HOH HOH . C 3 HOH A 33 333 33 HOH HOH . C 3 HOH A 34 334 34 HOH HOH . C 3 HOH A 35 335 35 HOH HOH . C 3 HOH A 36 336 36 HOH HOH . C 3 HOH A 37 337 37 HOH HOH . C 3 HOH A 38 338 38 HOH HOH . C 3 HOH A 39 339 39 HOH HOH . C 3 HOH A 40 340 40 HOH HOH . C 3 HOH A 41 341 41 HOH HOH . C 3 HOH A 42 342 42 HOH HOH . C 3 HOH A 43 343 43 HOH HOH . C 3 HOH A 44 344 44 HOH HOH . C 3 HOH A 45 345 45 HOH HOH . C 3 HOH A 46 346 46 HOH HOH . C 3 HOH A 47 347 47 HOH HOH . C 3 HOH A 48 348 48 HOH HOH . C 3 HOH A 49 349 49 HOH HOH . C 3 HOH A 50 350 50 HOH HOH . C 3 HOH A 51 351 51 HOH HOH . C 3 HOH A 52 352 52 HOH HOH . C 3 HOH A 53 353 53 HOH HOH . C 3 HOH A 54 354 54 HOH HOH . C 3 HOH A 55 355 55 HOH HOH . C 3 HOH A 56 356 56 HOH HOH . C 3 HOH A 57 357 57 HOH HOH . C 3 HOH A 58 358 58 HOH HOH . C 3 HOH A 59 359 59 HOH HOH . C 3 HOH A 60 360 60 HOH HOH . C 3 HOH A 61 361 61 HOH HOH . C 3 HOH A 62 362 62 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . B 2 15.109 9.846 17.938 1 39.11 ? CHA HEM 300 A 1 HETATM 2 C CHB HEM . . . B 2 11.12 7.302 18.868 1 39.38 ? CHB HEM 300 A 1 HETATM 3 C CHC HEM . . . B 2 12.702 6.543 23.37 1 36.89 ? CHC HEM 300 A 1 HETATM 4 C CHD HEM . . . B 2 17.013 8.349 22.202 1 37.04 ? CHD HEM 300 A 1 HETATM 5 C C1A HEM . . . B 2 13.857 9.246 17.806 1 39.46 ? C1A HEM 300 A 1 HETATM 6 C C2A HEM . . . B 2 12.872 9.44 16.699 1 40.77 ? C2A HEM 300 A 1 HETATM 7 C C3A HEM . . . B 2 11.826 8.632 16.948 1 40.6 ? C3A HEM 300 A 1 HETATM 8 C C4A HEM . . . B 2 12.106 7.996 18.201 1 40.08 ? C4A HEM 300 A 1 HETATM 9 C CMA HEM . . . B 2 10.567 8.446 16.1 1 41.17 ? CMA HEM 300 A 1 HETATM 10 C CAA HEM . . . B 2 12.828 10.377 15.501 0.7 40.19 ? CAA HEM 300 A 1 HETATM 11 C CBA HEM . . . B 2 13.521 11.713 15.489 0.7 40.98 ? CBA HEM 300 A 1 HETATM 12 C CGA HEM . . . B 2 13.461 12.367 14.126 0.7 40.81 ? CGA HEM 300 A 1 HETATM 13 O O1A HEM . . . B 2 14.104 11.847 13.189 0.7 41.21 ? O1A HEM 300 A 1 HETATM 14 O O2A HEM . . . B 2 12.77 13.396 13.993 0.7 40.74 ? O2A HEM 300 A 1 HETATM 15 C C1B HEM . . . B 2 11.236 6.84 20.158 1 38.5 ? C1B HEM 300 A 1 HETATM 16 C C2B HEM . . . B 2 10.12 6.183 20.868 1 38.44 ? C2B HEM 300 A 1 HETATM 17 C C3B HEM . . . B 2 10.551 5.97 22.144 1 37.9 ? C3B HEM 300 A 1 HETATM 18 C C4B HEM . . . B 2 11.951 6.467 22.197 1 38.23 ? C4B HEM 300 A 1 HETATM 19 C CMB HEM . . . B 2 8.738 5.836 20.284 1 38.05 ? CMB HEM 300 A 1 HETATM 20 C CAB HEM . . . B 2 9.813 5.373 23.17 1 38.75 ? CAB HEM 300 A 1 HETATM 21 C CBB HEM . . . B 2 9.176 4.046 23.023 1 37.32 ? CBB HEM 300 A 1 HETATM 22 C C1C HEM . . . B 2 13.976 7.026 23.455 1 36.85 ? C1C HEM 300 A 1 HETATM 23 C C2C HEM . . . B 2 14.757 6.98 24.684 1 36.26 ? C2C HEM 300 A 1 HETATM 24 C C3C HEM . . . B 2 16.033 7.337 24.333 1 36.4 ? C3C HEM 300 A 1 HETATM 25 C C4C HEM . . . B 2 15.993 7.674 22.898 1 36.74 ? C4C HEM 300 A 1 HETATM 26 C CMC HEM . . . B 2 14.221 6.616 26.061 1 34.76 ? CMC HEM 300 A 1 HETATM 27 C CAC HEM . . . B 2 17.172 7.337 25.106 1 36.18 ? CAC HEM 300 A 1 HETATM 28 C CBC HEM . . . B 2 17.317 7.075 26.528 1 35.94 ? CBC HEM 300 A 1 HETATM 29 C C1D HEM . . . B 2 16.89 8.885 20.915 1 37.61 ? C1D HEM 300 A 1 HETATM 30 C C2D HEM . . . B 2 17.96 9.568 20.216 1 38.61 ? C2D HEM 300 A 1 HETATM 31 C C3D HEM . . . B 2 17.39 10.082 19.077 1 38.96 ? C3D HEM 300 A 1 HETATM 32 C C4D HEM . . . B 2 16.005 9.636 19.014 1 38.64 ? C4D HEM 300 A 1 HETATM 33 C CMD HEM . . . B 2 19.394 9.722 20.682 1 35.87 ? CMD HEM 300 A 1 HETATM 34 C CAD HEM . . . B 2 18.143 10.943 18.089 1 40.05 ? CAD HEM 300 A 1 HETATM 35 C CBD HEM . . . B 2 18.398 10.154 16.814 1 41.01 ? CBD HEM 300 A 1 HETATM 36 C CGD HEM . . . B 2 19.123 10.969 15.771 1 41.78 ? CGD HEM 300 A 1 HETATM 37 O O1D HEM . . . B 2 20.378 10.969 15.786 1 41.14 ? O1D HEM 300 A 1 HETATM 38 O O2D HEM . . . B 2 18.429 11.615 14.953 1 41.51 ? O2D HEM 300 A 1 HETATM 39 N NA HEM . . . B 2 13.349 8.351 18.721 1 38.95 ? NA HEM 300 A 1 HETATM 40 N NB HEM . . . B 2 12.365 6.973 20.956 1 37.49 ? NB HEM 300 A 1 HETATM 41 N NC HEM . . . B 2 14.73 7.459 22.367 1 36.81 ? NC HEM 300 A 1 HETATM 42 N ND HEM . . . B 2 15.734 8.846 20.125 1 37.9 ? ND HEM 300 A 1 HETATM 43 FE FE HEM . . . B 2 14.146 7.7 20.452 1 38.22 ? FE HEM 300 A 1 # _model_server_stats.io_time_ms 5 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 266 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 43 #