data_1P3V # _model_server_result.job_id Da0ZsRYB0BQ1ygskrxaChA _model_server_result.datetime_utc '2024-12-12 12:59:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1p3v # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":300}' # _entry.id 1P3V # _exptl.entry_id 1P3V _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1P3V _cell.length_a 60.449 _cell.length_b 60.449 _cell.length_c 102.361 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1P3V _symmetry.cell_setting tetragonal _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 23 A HIS 23 1_555 B FE HEM . A HEM 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.159 ? metalc ? metalc2 B FE HEM . A HEM 300 1_555 C C CMO . A CMO 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.968 ? metalc ? metalc3 B FE HEM . A HEM 300 1_555 C O CMO . A CMO 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.143 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 130 n n CHA C4D HEM doub 131 n n CHA HHA HEM sing 132 n n CHB C4A HEM sing 133 n n CHB C1B HEM doub 134 n n CHB HHB HEM sing 135 n n CHC C4B HEM sing 136 n n CHC C1C HEM doub 137 n n CHC HHC HEM sing 138 n n CHD C4C HEM doub 139 n n CHD C1D HEM sing 140 n n CHD HHD HEM sing 141 n n C1A C2A HEM doub 142 n y C1A NA HEM sing 143 n y C2A C3A HEM sing 144 n y C2A CAA HEM sing 145 n n C3A C4A HEM doub 146 n y C3A CMA HEM sing 147 n n C4A NA HEM sing 148 n y CMA HMA HEM sing 149 n n CMA HMAA HEM sing 150 n n CMA HMAB HEM sing 151 n n CAA CBA HEM sing 152 n n CAA HAA HEM sing 153 n n CAA HAAA HEM sing 154 n n CBA CGA HEM sing 155 n n CBA HBA HEM sing 156 n n CBA HBAA HEM sing 157 n n CGA O1A HEM doub 158 n n CGA O2A HEM sing 159 n n C1B C2B HEM sing 160 n n C1B NB HEM sing 161 n n C2B C3B HEM doub 162 n n C2B CMB HEM sing 163 n n C3B C4B HEM sing 164 n n C3B CAB HEM sing 165 n n C4B NB HEM doub 166 n n CMB HMB HEM sing 167 n n CMB HMBA HEM sing 168 n n CMB HMBB HEM sing 169 n n CAB CBB HEM doub 170 n n CAB HAB HEM sing 171 n n CBB HBB HEM sing 172 n n CBB HBBA HEM sing 173 n n C1C C2C HEM sing 174 n y C1C NC HEM sing 175 n y C2C C3C HEM doub 176 n y C2C CMC HEM sing 177 n n C3C C4C HEM sing 178 n y C3C CAC HEM sing 179 n n C4C NC HEM sing 180 n y CMC HMC HEM sing 181 n n CMC HMCA HEM sing 182 n n CMC HMCB HEM sing 183 n n CAC CBC HEM doub 184 n n CAC HAC HEM sing 185 n n CBC HBC HEM sing 186 n n CBC HBCA HEM sing 187 n n C1D C2D HEM sing 188 n n C1D ND HEM doub 189 n n C2D C3D HEM doub 190 n n C2D CMD HEM sing 191 n n C3D C4D HEM sing 192 n n C3D CAD HEM sing 193 n n C4D ND HEM sing 194 n n CMD HMD HEM sing 195 n n CMD HMDA HEM sing 196 n n CMD HMDB HEM sing 197 n n CAD CBD HEM sing 198 n n CAD HAD HEM sing 199 n n CAD HADA HEM sing 200 n n CBD CGD HEM sing 201 n n CBD HBD HEM sing 202 n n CBD HBDA HEM sing 203 n n CGD O1D HEM doub 204 n n CGD O2D HEM sing 205 n n O2A H2A HEM sing 206 n n O2D H2D HEM sing 207 n n FE NA HEM sing 208 n n FE NB HEM sing 209 n n FE NC HEM sing 210 n n FE ND HEM sing 211 n n # _atom_sites.entry_id 1P3V _atom_sites.fract_transf_matrix[1][1] 0.016543 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016543 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009769 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEM A 1 300 300 HEM HEM . C 3 CMO A 1 400 400 CMO CMO . D 4 HOH A 1 401 1 HOH HOH . D 4 HOH A 2 402 2 HOH HOH . D 4 HOH A 3 403 3 HOH HOH . D 4 HOH A 4 404 4 HOH HOH . D 4 HOH A 5 405 5 HOH HOH . D 4 HOH A 6 406 6 HOH HOH . D 4 HOH A 7 407 7 HOH HOH . D 4 HOH A 8 408 8 HOH HOH . D 4 HOH A 9 409 9 HOH HOH . D 4 HOH A 10 410 10 HOH HOH . D 4 HOH A 11 411 11 HOH HOH . D 4 HOH A 12 412 12 HOH HOH . D 4 HOH A 13 413 13 HOH HOH . D 4 HOH A 14 414 14 HOH HOH . D 4 HOH A 15 415 15 HOH HOH . D 4 HOH A 16 416 16 HOH HOH . D 4 HOH A 17 417 17 HOH HOH . D 4 HOH A 18 418 18 HOH HOH . D 4 HOH A 19 419 19 HOH HOH . D 4 HOH A 20 420 20 HOH HOH . D 4 HOH A 21 421 21 HOH HOH . D 4 HOH A 22 422 22 HOH HOH . D 4 HOH A 23 423 23 HOH HOH . D 4 HOH A 24 424 24 HOH HOH . D 4 HOH A 25 425 25 HOH HOH . D 4 HOH A 26 426 26 HOH HOH . D 4 HOH A 27 427 27 HOH HOH . D 4 HOH A 28 428 28 HOH HOH . D 4 HOH A 29 429 29 HOH HOH . D 4 HOH A 30 430 30 HOH HOH . D 4 HOH A 31 431 31 HOH HOH . D 4 HOH A 32 432 32 HOH HOH . D 4 HOH A 33 433 33 HOH HOH . D 4 HOH A 34 434 34 HOH HOH . D 4 HOH A 35 435 35 HOH HOH . D 4 HOH A 36 436 36 HOH HOH . D 4 HOH A 37 437 37 HOH HOH . D 4 HOH A 38 438 38 HOH HOH . D 4 HOH A 39 439 39 HOH HOH . D 4 HOH A 40 440 40 HOH HOH . D 4 HOH A 41 441 41 HOH HOH . D 4 HOH A 42 442 42 HOH HOH . D 4 HOH A 43 443 43 HOH HOH . D 4 HOH A 44 444 44 HOH HOH . D 4 HOH A 45 445 45 HOH HOH . D 4 HOH A 46 446 46 HOH HOH . D 4 HOH A 47 447 47 HOH HOH . D 4 HOH A 48 448 48 HOH HOH . D 4 HOH A 49 449 49 HOH HOH . D 4 HOH A 50 450 50 HOH HOH . D 4 HOH A 51 451 51 HOH HOH . D 4 HOH A 52 452 52 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . B 2 14.543 10.269 18.736 1 42.64 ? CHA HEM 300 A 1 HETATM 2 C CHB HEM . . . B 2 10.566 7.636 19.608 1 42.4 ? CHB HEM 300 A 1 HETATM 3 C CHC HEM . . . B 2 12.388 6.419 23.952 1 42.3 ? CHC HEM 300 A 1 HETATM 4 C CHD HEM . . . B 2 16.601 8.641 22.889 1 41.94 ? CHD HEM 300 A 1 HETATM 5 C C1A HEM . . . B 2 13.297 9.629 18.576 1 42.69 ? C1A HEM 300 A 1 HETATM 6 C C2A HEM . . . B 2 12.4 9.744 17.411 1 43.15 ? C2A HEM 300 A 1 HETATM 7 C C3A HEM . . . B 2 11.279 8.983 17.669 1 42.94 ? C3A HEM 300 A 1 HETATM 8 C C4A HEM . . . B 2 11.496 8.431 18.981 1 42.59 ? C4A HEM 300 A 1 HETATM 9 C CMA HEM . . . B 2 10.065 8.706 16.766 1 42.9 ? CMA HEM 300 A 1 HETATM 10 C CAA HEM . . . B 2 12.625 10.565 16.135 1 43.6 ? CAA HEM 300 A 1 HETATM 11 C CBA HEM . . . B 2 12.405 12.034 16.442 1 44.24 ? CBA HEM 300 A 1 HETATM 12 C CGA HEM . . . B 2 12.579 12.93 15.223 1 44.69 ? CGA HEM 300 A 1 HETATM 13 O O1A HEM . . . B 2 13.598 12.778 14.503 1 44.75 ? O1A HEM 300 A 1 HETATM 14 O O2A HEM . . . B 2 11.703 13.801 14.997 1 45.01 ? O2A HEM 300 A 1 HETATM 15 C C1B HEM . . . B 2 10.772 7.012 20.838 1 42.36 ? C1B HEM 300 A 1 HETATM 16 C C2B HEM . . . B 2 9.705 6.334 21.543 1 42.31 ? C2B HEM 300 A 1 HETATM 17 C C3B HEM . . . B 2 10.18 6.001 22.782 1 42.35 ? C3B HEM 300 A 1 HETATM 18 C C4B HEM . . . B 2 11.569 6.484 22.827 1 42.24 ? C4B HEM 300 A 1 HETATM 19 C CMB HEM . . . B 2 8.316 6.118 20.989 1 42.36 ? CMB HEM 300 A 1 HETATM 20 C CAB HEM . . . B 2 9.496 5.391 23.846 1 42.33 ? CAB HEM 300 A 1 HETATM 21 C CBB HEM . . . B 2 8.473 4.358 23.755 1 42.43 ? CBB HEM 300 A 1 HETATM 22 C C1C HEM . . . B 2 13.695 6.949 24.019 1 42.07 ? C1C HEM 300 A 1 HETATM 23 C C2C HEM . . . B 2 14.519 6.911 25.226 1 42 ? C2C HEM 300 A 1 HETATM 24 C C3C HEM . . . B 2 15.736 7.448 24.923 1 41.88 ? C3C HEM 300 A 1 HETATM 25 C C4C HEM . . . B 2 15.632 7.854 23.526 1 41.98 ? C4C HEM 300 A 1 HETATM 26 C CMC HEM . . . B 2 14.031 6.484 26.611 1 41.87 ? CMC HEM 300 A 1 HETATM 27 C CAC HEM . . . B 2 16.846 7.669 25.75 1 41.71 ? CAC HEM 300 A 1 HETATM 28 C CBC HEM . . . B 2 17.317 6.866 26.85 1 41.57 ? CBC HEM 300 A 1 HETATM 29 C C1D HEM . . . B 2 16.384 9.28 21.667 1 42.18 ? C1D HEM 300 A 1 HETATM 30 C C2D HEM . . . B 2 17.445 9.943 20.936 1 42.28 ? C2D HEM 300 A 1 HETATM 31 C C3D HEM . . . B 2 16.843 10.443 19.809 1 42.4 ? C3D HEM 300 A 1 HETATM 32 C C4D HEM . . . B 2 15.449 10.057 19.819 1 42.35 ? C4D HEM 300 A 1 HETATM 33 C CMD HEM . . . B 2 18.914 10.06 21.375 1 42.16 ? CMD HEM 300 A 1 HETATM 34 C CAD HEM . . . B 2 17.54 11.285 18.749 1 42.31 ? CAD HEM 300 A 1 HETATM 35 C CBD HEM . . . B 2 17.719 10.529 17.434 1 42.47 ? CBD HEM 300 A 1 HETATM 36 C CGD HEM . . . B 2 18.349 11.387 16.356 1 42.48 ? CGD HEM 300 A 1 HETATM 37 O O1D HEM . . . B 2 19.594 11.503 16.317 1 42.43 ? O1D HEM 300 A 1 HETATM 38 O O2D HEM . . . B 2 17.587 11.955 15.554 1 42.44 ? O2D HEM 300 A 1 HETATM 39 N NA HEM . . . B 2 12.751 8.788 19.507 1 42.31 ? NA HEM 300 A 1 HETATM 40 N NB HEM . . . B 2 11.933 7.112 21.629 1 42.1 ? NB HEM 300 A 1 HETATM 41 N NC HEM . . . B 2 14.358 7.577 22.992 1 41.88 ? NC HEM 300 A 1 HETATM 42 N ND HEM . . . B 2 15.193 9.279 20.939 1 42.05 ? ND HEM 300 A 1 HETATM 43 FE FE HEM . . . B 2 13.612 8.149 21.199 1 41.9 ? FE HEM 300 A 1 # _model_server_stats.io_time_ms 58 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 312 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 43 #