data_1P49 # _model_server_result.job_id 1au6hO9K-742jUra-PoaJw _model_server_result.datetime_utc '2024-11-26 14:06:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1p49 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":601}' # _entry.id 1P49 # _exptl.entry_id 1P49 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 292.369 _entity.id 2 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 'octyl beta-D-glucopyranoside' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1P49 _cell.length_a 116.98 _cell.length_b 116.98 _cell.length_c 102.66 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1P49 _symmetry.cell_setting ? _symmetry.Int_Tables_number 150 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 3 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PQS monomeric 1 author_and_software_defined_assembly 1 PISA trimeric 3 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H 1 1 A,B,C,D,E,F,G,H 2 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_545 -y,x-y-1,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 58.49 -101.307652 0 3 'crystal symmetry operation' 3_655 -x+y+1,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 116.98 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 120 A CYS 141 1_555 A SG CYS 127 A CYS 148 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? disulf ? disulf2 A SG CYS 149 A CYS 170 1_555 A SG CYS 221 A CYS 242 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? disulf ? disulf3 A SG CYS 425 A CYS 446 1_555 A SG CYS 468 A CYS 489 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf4 A SG CYS 460 A CYS 481 1_555 A SG CYS 466 A CYS 487 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf5 A SG CYS 541 A CYS 562 1_555 A SG CYS 549 A CYS 570 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf6 A SG CYS 542 A CYS 563 1_555 A SG CYS 551 A CYS 572 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? covale ? covale1 A ND2 ASN 26 A ASN 47 1_555 D C1 NAG . A NAG 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.449 ? covale ? covale2 A C LEU 53 A LEU 74 1_555 A N ALS 54 A ALS 75 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale3 A C ALS 54 A ALS 75 1_555 A N THR 55 A THR 76 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale4 A ND2 ASN 238 A ASN 259 1_555 E C1 NAG . A NAG 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.45 ? metalc ? metalc1 A OD1 ASP 14 A ASP 35 1_555 F CA CA . A CA 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.318 ? metalc ? metalc2 A OD1 ASP 15 A ASP 36 1_555 F CA CA . A CA 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.816 ? metalc ? metalc3 A OD2 ASP 15 A ASP 36 1_555 F CA CA . A CA 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.783 ? metalc ? metalc4 A S ALS 54 A ALS 75 1_555 F CA CA . A CA 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.153 ? metalc ? metalc5 A OS1 ALS 54 A ALS 75 1_555 F CA CA . A CA 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.693 ? metalc ? metalc6 A OS3 ALS 54 A ALS 75 1_555 F CA CA . A CA 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.587 ? metalc ? metalc7 A OD1 ASP 321 A ASP 342 1_555 F CA CA . A CA 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.093 ? metalc ? metalc8 A OD2 ASP 321 A ASP 342 1_555 F CA CA . A CA 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.768 ? metalc ? metalc9 A OE1 GLN 322 A GLN 343 1_555 F CA CA . A CA 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.194 ? # _chem_comp.formula 'C14 H28 O6' _chem_comp.formula_weight 292.369 _chem_comp.id BOG _chem_comp.mon_nstd_flag n _chem_comp.name 'octyl beta-D-glucopyranoside' _chem_comp.type d-saccharide _chem_comp.pdbx_synonyms ? # _pdbx_chem_comp_identifier.comp_id BOG _pdbx_chem_comp_identifier.identifier b-octylglucoside _pdbx_chem_comp_identifier.type 'IUPAC CARBOHYDRATE SYMBOL' _pdbx_chem_comp_identifier.program PDB-CARE _pdbx_chem_comp_identifier.program_version 1 # _atom_sites.entry_id 1P49 _atom_sites.fract_transf_matrix[1][1] 0.008548 _atom_sites.fract_transf_matrix[1][2] 0.004935 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009871 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009741 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 BOG A 1 601 602 BOG BOG . C 2 BOG A 1 602 603 BOG BOG . D 3 NAG A 1 603 605 NAG NAG . E 3 NAG A 1 604 606 NAG NAG . F 4 CA A 1 605 600 CA CA2 . G 5 PO4 A 1 606 601 PO4 PO4 . H 6 HOH A 1 701 611 HOH HOH . H 6 HOH A 2 702 612 HOH HOH . H 6 HOH A 3 703 613 HOH HOH . H 6 HOH A 4 704 614 HOH HOH . H 6 HOH A 5 705 616 HOH HOH . H 6 HOH A 6 706 617 HOH HOH . H 6 HOH A 7 707 618 HOH HOH . H 6 HOH A 8 708 619 HOH HOH . H 6 HOH A 9 709 620 HOH HOH . H 6 HOH A 10 710 621 HOH HOH . H 6 HOH A 11 711 622 HOH HOH . H 6 HOH A 12 712 623 HOH HOH . H 6 HOH A 13 713 624 HOH HOH . H 6 HOH A 14 714 625 HOH HOH . H 6 HOH A 15 715 626 HOH HOH . H 6 HOH A 16 716 627 HOH HOH . H 6 HOH A 17 717 628 HOH HOH . H 6 HOH A 18 718 629 HOH HOH . H 6 HOH A 19 719 630 HOH HOH . H 6 HOH A 20 720 631 HOH HOH . H 6 HOH A 21 721 632 HOH HOH . H 6 HOH A 22 722 633 HOH HOH . H 6 HOH A 23 723 634 HOH HOH . H 6 HOH A 24 724 635 HOH HOH . H 6 HOH A 25 725 636 HOH HOH . H 6 HOH A 26 726 637 HOH HOH . H 6 HOH A 27 727 638 HOH HOH . H 6 HOH A 28 728 639 HOH HOH . H 6 HOH A 29 729 640 HOH HOH . H 6 HOH A 30 730 642 HOH HOH . H 6 HOH A 31 731 643 HOH HOH . H 6 HOH A 32 732 647 HOH HOH . H 6 HOH A 33 733 648 HOH HOH . H 6 HOH A 34 734 649 HOH HOH . H 6 HOH A 35 735 651 HOH HOH . H 6 HOH A 36 736 652 HOH HOH . H 6 HOH A 37 737 653 HOH HOH . H 6 HOH A 38 738 654 HOH HOH . H 6 HOH A 39 739 656 HOH HOH . H 6 HOH A 40 740 660 HOH HOH . H 6 HOH A 41 741 663 HOH HOH . H 6 HOH A 42 742 664 HOH HOH . H 6 HOH A 43 743 668 HOH HOH . H 6 HOH A 44 744 669 HOH HOH . H 6 HOH A 45 745 670 HOH HOH . H 6 HOH A 46 746 671 HOH HOH . H 6 HOH A 47 747 672 HOH HOH . H 6 HOH A 48 748 674 HOH HOH . H 6 HOH A 49 749 676 HOH HOH . H 6 HOH A 50 750 677 HOH HOH . H 6 HOH A 51 751 679 HOH HOH . H 6 HOH A 52 752 680 HOH HOH . H 6 HOH A 53 753 682 HOH HOH . H 6 HOH A 54 754 684 HOH HOH . H 6 HOH A 55 755 686 HOH HOH . H 6 HOH A 56 756 688 HOH HOH . H 6 HOH A 57 757 690 HOH HOH . H 6 HOH A 58 758 692 HOH HOH . H 6 HOH A 59 759 694 HOH HOH . H 6 HOH A 60 760 695 HOH HOH . H 6 HOH A 61 761 697 HOH HOH . H 6 HOH A 62 762 698 HOH HOH . H 6 HOH A 63 763 699 HOH HOH . H 6 HOH A 64 764 700 HOH HOH . H 6 HOH A 65 765 701 HOH HOH . H 6 HOH A 66 766 702 HOH HOH . H 6 HOH A 67 767 703 HOH HOH . H 6 HOH A 68 768 704 HOH HOH . H 6 HOH A 69 769 705 HOH HOH . H 6 HOH A 70 770 711 HOH HOH . H 6 HOH A 71 771 717 HOH HOH . H 6 HOH A 72 772 718 HOH HOH . H 6 HOH A 73 773 719 HOH HOH . H 6 HOH A 74 774 720 HOH HOH . H 6 HOH A 75 775 722 HOH HOH . H 6 HOH A 76 776 725 HOH HOH . H 6 HOH A 77 777 729 HOH HOH . H 6 HOH A 78 778 730 HOH HOH . H 6 HOH A 79 779 731 HOH HOH . H 6 HOH A 80 780 734 HOH HOH . H 6 HOH A 81 781 735 HOH HOH . H 6 HOH A 82 782 741 HOH HOH . H 6 HOH A 83 783 745 HOH HOH . H 6 HOH A 84 784 746 HOH HOH . H 6 HOH A 85 785 748 HOH HOH . H 6 HOH A 86 786 750 HOH HOH . H 6 HOH A 87 787 756 HOH HOH . H 6 HOH A 88 788 757 HOH HOH . H 6 HOH A 89 789 758 HOH HOH . H 6 HOH A 90 790 759 HOH HOH . H 6 HOH A 91 791 765 HOH HOH . H 6 HOH A 92 792 774 HOH HOH . H 6 HOH A 93 793 775 HOH HOH . H 6 HOH A 94 794 776 HOH HOH . H 6 HOH A 95 795 778 HOH HOH . H 6 HOH A 96 796 779 HOH HOH . H 6 HOH A 97 797 783 HOH HOH . H 6 HOH A 98 798 786 HOH HOH . H 6 HOH A 99 799 800 HOH HOH . H 6 HOH A 100 800 803 HOH HOH . H 6 HOH A 101 801 809 HOH HOH . H 6 HOH A 102 802 811 HOH HOH . H 6 HOH A 103 803 813 HOH HOH . H 6 HOH A 104 804 816 HOH HOH . H 6 HOH A 105 805 822 HOH HOH . H 6 HOH A 106 806 824 HOH HOH . H 6 HOH A 107 807 829 HOH HOH . H 6 HOH A 108 808 830 HOH HOH . H 6 HOH A 109 809 831 HOH HOH . H 6 HOH A 110 810 832 HOH HOH . H 6 HOH A 111 811 838 HOH HOH . H 6 HOH A 112 812 846 HOH HOH . H 6 HOH A 113 813 848 HOH HOH . H 6 HOH A 114 814 850 HOH HOH . H 6 HOH A 115 815 851 HOH HOH . H 6 HOH A 116 816 852 HOH HOH . H 6 HOH A 117 817 853 HOH HOH . H 6 HOH A 118 818 854 HOH HOH . H 6 HOH A 119 819 855 HOH HOH . H 6 HOH A 120 820 856 HOH HOH . H 6 HOH A 121 821 857 HOH HOH . H 6 HOH A 122 822 858 HOH HOH . H 6 HOH A 123 823 859 HOH HOH . H 6 HOH A 124 824 860 HOH HOH . H 6 HOH A 125 825 861 HOH HOH . H 6 HOH A 126 826 862 HOH HOH . H 6 HOH A 127 827 863 HOH HOH . H 6 HOH A 128 828 864 HOH HOH . H 6 HOH A 129 829 865 HOH HOH . H 6 HOH A 130 830 866 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 BOG . . . B 2 73.004 -31.428 54.378 1 96.58 ? C1 BOG 601 A 1 HETATM 2 O O1 BOG . . . B 2 72.954 -31.039 52.987 1 96.5 ? O1 BOG 601 A 1 HETATM 3 C C2 BOG . . . B 2 71.555 -31.463 54.954 1 96.39 ? C2 BOG 601 A 1 HETATM 4 O O2 BOG . . . B 2 70.952 -30.182 54.806 1 95.97 ? O2 BOG 601 A 1 HETATM 5 C C3 BOG . . . B 2 71.591 -31.894 56.451 1 96.53 ? C3 BOG 601 A 1 HETATM 6 O O3 BOG . . . B 2 70.275 -31.935 56.991 1 96.45 ? O3 BOG 601 A 1 HETATM 7 C C4 BOG . . . B 2 72.25 -33.286 56.559 1 96.62 ? C4 BOG 601 A 1 HETATM 8 O O4 BOG . . . B 2 72.287 -33.708 57.924 1 96.98 ? O4 BOG 601 A 1 HETATM 9 C C5 BOG . . . B 2 73.705 -33.228 55.963 1 96.87 ? C5 BOG 601 A 1 HETATM 10 O O5 BOG . . . B 2 73.628 -32.774 54.557 1 97.02 ? O5 BOG 601 A 1 HETATM 11 C C6 BOG . . . B 2 74.381 -34.616 56.056 1 96.2 ? C6 BOG 601 A 1 HETATM 12 O O6 BOG . . . B 2 74.461 -35.283 54.796 1 95.93 ? O6 BOG 601 A 1 HETATM 13 C C1' BOG . . . B 2 74.228 -30.984 52.336 1 95.46 ? C1' BOG 601 A 1 HETATM 14 C C2' BOG . . . B 2 74.644 -29.551 52.122 1 94.78 ? C2' BOG 601 A 1 HETATM 15 C C3' BOG . . . B 2 74.005 -29.008 50.868 1 93.86 ? C3' BOG 601 A 1 HETATM 16 C C4' BOG . . . B 2 74.412 -27.571 50.623 1 93.05 ? C4' BOG 601 A 1 HETATM 17 C C5' BOG . . . B 2 73.767 -27.007 49.371 1 92.76 ? C5' BOG 601 A 1 HETATM 18 C C6' BOG . . . B 2 73.167 -25.644 49.678 1 92.58 ? C6' BOG 601 A 1 HETATM 19 C C7' BOG . . . B 2 72.511 -25.024 48.481 1 92.76 ? C7' BOG 601 A 1 HETATM 20 C C8' BOG . . . B 2 71.937 -23.674 48.848 1 92.74 ? C8' BOG 601 A 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 23 _model_server_stats.create_model_time_ms 48 _model_server_stats.query_time_ms 364 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 20 #