data_1P4D # _model_server_result.job_id Or7FEdK0q0orx5G0rrivnw _model_server_result.datetime_utc '2024-11-02 05:32:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1p4d # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":601}' # _entry.id 1P4D # _exptl.entry_id 1P4D _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 11 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1P4D _cell.length_a 128.219 _cell.length_b 128.219 _cell.length_c 121.184 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1P4D _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 31 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 ? monomeric 1 author_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,E,F,G,H,I,R 1 1 B,J,K,L,M,N,O,S 2 1 C,P,Q,T 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N ? 3 G N N ? 3 H N N ? 3 I N N ? 3 K N N ? 3 L N N ? 3 M N N ? 3 N N N ? 3 O N N ? 3 Q N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A ND1 HIS 146 A HIS 146 1_555 D MG MG . A MG 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.523 ? metalc ? metalc2 A NE2 HIS 157 A HIS 157 1_555 D MG MG . A MG 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.271 ? metalc ? metalc3 A NE2 HIS 159 A HIS 159 1_555 D MG MG . A MG 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.222 ? metalc ? metalc4 D MG MG . A MG 900 1_555 R O HOH . A HOH 942 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.015 ? metalc ? metalc5 D MG MG . A MG 900 1_555 R O HOH . A HOH 956 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.237 ? metalc ? metalc6 D MG MG . A MG 900 1_555 R O HOH . A HOH 981 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.083 ? metalc ? metalc7 B ND1 HIS 146 B HIS 146 1_555 J MG MG . B MG 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.289 ? metalc ? metalc8 B NE2 HIS 157 B HIS 157 1_555 J MG MG . B MG 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.544 ? metalc ? metalc9 B NE2 HIS 159 B HIS 159 1_555 J MG MG . B MG 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.677 ? metalc ? metalc10 J MG MG . B MG 901 1_555 S O HOH . B HOH 934 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.445 ? metalc ? metalc11 C ND1 HIS 146 C HIS 146 1_555 P MG MG . C MG 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.753 ? metalc ? metalc12 C NE2 HIS 157 C HIS 157 1_555 P MG MG . C MG 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.771 ? metalc ? metalc13 C NE2 HIS 159 C HIS 159 1_555 P MG MG . C MG 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.126 ? metalc ? metalc14 P MG MG . C MG 902 1_555 T O HOH . C HOH 905 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.608 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 70 n n C1 C2 EDO sing 71 n n C1 H11 EDO sing 72 n n C1 H12 EDO sing 73 n n O1 HO1 EDO sing 74 n n C2 O2 EDO sing 75 n n C2 H21 EDO sing 76 n n C2 H22 EDO sing 77 n n O2 HO2 EDO sing 78 n n # _atom_sites.entry_id 1P4D _atom_sites.fract_transf_matrix[1][1] 0.007799 _atom_sites.fract_transf_matrix[1][2] 0.004503 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009006 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008252 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 MG A 1 900 900 MG MG . E 3 EDO A 1 600 600 EDO EGL . F 3 EDO A 1 601 601 EDO EGL . G 3 EDO A 1 606 606 EDO EGL . H 3 EDO A 1 608 608 EDO EGL . I 3 EDO A 1 612 612 EDO EGL . J 2 MG B 1 901 900 MG MG . K 3 EDO B 1 602 602 EDO EGL . L 3 EDO B 1 604 604 EDO EGL . M 3 EDO B 1 605 605 EDO EGL . N 3 EDO B 1 607 607 EDO EGL . O 3 EDO B 1 610 610 EDO EGL . P 2 MG C 1 902 900 MG MG . Q 3 EDO C 1 603 603 EDO EGL . R 4 HOH A 1 901 2 HOH TIP . R 4 HOH A 2 902 5 HOH TIP . R 4 HOH A 3 903 7 HOH TIP . R 4 HOH A 4 904 10 HOH TIP . R 4 HOH A 5 905 11 HOH TIP . R 4 HOH A 6 906 12 HOH TIP . R 4 HOH A 7 907 13 HOH TIP . R 4 HOH A 8 908 14 HOH TIP . R 4 HOH A 9 909 15 HOH TIP . R 4 HOH A 10 910 16 HOH TIP . R 4 HOH A 11 911 17 HOH TIP . R 4 HOH A 12 912 18 HOH TIP . R 4 HOH A 13 913 22 HOH TIP . R 4 HOH A 14 914 24 HOH TIP . R 4 HOH A 15 915 25 HOH TIP . R 4 HOH A 16 916 26 HOH TIP . R 4 HOH A 17 917 27 HOH TIP . R 4 HOH A 18 918 28 HOH TIP . R 4 HOH A 19 919 29 HOH TIP . R 4 HOH A 20 920 30 HOH TIP . R 4 HOH A 21 921 32 HOH TIP . R 4 HOH A 22 922 34 HOH TIP . R 4 HOH A 23 923 37 HOH TIP . R 4 HOH A 24 924 38 HOH TIP . R 4 HOH A 25 925 42 HOH TIP . R 4 HOH A 26 926 43 HOH TIP . R 4 HOH A 27 927 45 HOH TIP . R 4 HOH A 28 928 49 HOH TIP . R 4 HOH A 29 929 51 HOH TIP . R 4 HOH A 30 930 55 HOH TIP . R 4 HOH A 31 931 57 HOH TIP . R 4 HOH A 32 932 59 HOH TIP . R 4 HOH A 33 933 62 HOH TIP . R 4 HOH A 34 934 63 HOH TIP . R 4 HOH A 35 935 66 HOH TIP . R 4 HOH A 36 936 67 HOH TIP . R 4 HOH A 37 937 71 HOH TIP . R 4 HOH A 38 938 72 HOH TIP . R 4 HOH A 39 939 74 HOH TIP . R 4 HOH A 40 940 75 HOH TIP . R 4 HOH A 41 941 76 HOH TIP . R 4 HOH A 42 942 79 HOH TIP . R 4 HOH A 43 943 85 HOH TIP . R 4 HOH A 44 944 87 HOH TIP . R 4 HOH A 45 945 88 HOH TIP . R 4 HOH A 46 946 90 HOH TIP . R 4 HOH A 47 947 91 HOH TIP . R 4 HOH A 48 948 93 HOH TIP . R 4 HOH A 49 949 95 HOH TIP . R 4 HOH A 50 950 98 HOH TIP . R 4 HOH A 51 951 104 HOH TIP . R 4 HOH A 52 952 110 HOH TIP . R 4 HOH A 53 953 111 HOH TIP . R 4 HOH A 54 954 112 HOH TIP . R 4 HOH A 55 955 113 HOH TIP . R 4 HOH A 56 956 114 HOH TIP . R 4 HOH A 57 957 116 HOH TIP . R 4 HOH A 58 958 118 HOH TIP . R 4 HOH A 59 959 119 HOH TIP . R 4 HOH A 60 960 124 HOH TIP . R 4 HOH A 61 961 127 HOH TIP . R 4 HOH A 62 962 128 HOH TIP . R 4 HOH A 63 963 133 HOH TIP . R 4 HOH A 64 964 137 HOH TIP . R 4 HOH A 65 965 140 HOH TIP . R 4 HOH A 66 966 148 HOH TIP . R 4 HOH A 67 967 151 HOH TIP . R 4 HOH A 68 968 152 HOH TIP . R 4 HOH A 69 969 153 HOH TIP . R 4 HOH A 70 970 155 HOH TIP . R 4 HOH A 71 971 159 HOH TIP . R 4 HOH A 72 972 160 HOH TIP . R 4 HOH A 73 973 161 HOH TIP . R 4 HOH A 74 974 163 HOH TIP . R 4 HOH A 75 975 167 HOH TIP . R 4 HOH A 76 976 168 HOH TIP . R 4 HOH A 77 977 169 HOH TIP . R 4 HOH A 78 978 170 HOH TIP . R 4 HOH A 79 979 172 HOH TIP . R 4 HOH A 80 980 173 HOH TIP . R 4 HOH A 81 981 174 HOH TIP . S 4 HOH B 1 902 1 HOH TIP . S 4 HOH B 2 903 3 HOH TIP . S 4 HOH B 3 904 4 HOH TIP . S 4 HOH B 4 905 8 HOH TIP . S 4 HOH B 5 906 9 HOH TIP . S 4 HOH B 6 907 19 HOH TIP . S 4 HOH B 7 908 20 HOH TIP . S 4 HOH B 8 909 21 HOH TIP . S 4 HOH B 9 910 23 HOH TIP . S 4 HOH B 10 911 33 HOH TIP . S 4 HOH B 11 912 35 HOH TIP . S 4 HOH B 12 913 36 HOH TIP . S 4 HOH B 13 914 39 HOH TIP . S 4 HOH B 14 915 40 HOH TIP . S 4 HOH B 15 916 41 HOH TIP . S 4 HOH B 16 917 44 HOH TIP . S 4 HOH B 17 918 46 HOH TIP . S 4 HOH B 18 919 47 HOH TIP . S 4 HOH B 19 920 48 HOH TIP . S 4 HOH B 20 921 50 HOH TIP . S 4 HOH B 21 922 52 HOH TIP . S 4 HOH B 22 923 53 HOH TIP . S 4 HOH B 23 924 54 HOH TIP . S 4 HOH B 24 925 56 HOH TIP . S 4 HOH B 25 926 58 HOH TIP . S 4 HOH B 26 927 61 HOH TIP . S 4 HOH B 27 928 64 HOH TIP . S 4 HOH B 28 929 65 HOH TIP . S 4 HOH B 29 930 68 HOH TIP . S 4 HOH B 30 931 69 HOH TIP . S 4 HOH B 31 932 70 HOH TIP . S 4 HOH B 32 933 77 HOH TIP . S 4 HOH B 33 934 78 HOH TIP . S 4 HOH B 34 935 80 HOH TIP . S 4 HOH B 35 936 82 HOH TIP . S 4 HOH B 36 937 83 HOH TIP . S 4 HOH B 37 938 84 HOH TIP . S 4 HOH B 38 939 86 HOH TIP . S 4 HOH B 39 940 89 HOH TIP . S 4 HOH B 40 941 97 HOH TIP . S 4 HOH B 41 942 99 HOH TIP . S 4 HOH B 42 943 102 HOH TIP . S 4 HOH B 43 944 103 HOH TIP . S 4 HOH B 44 945 106 HOH TIP . S 4 HOH B 45 946 107 HOH TIP . S 4 HOH B 46 947 108 HOH TIP . S 4 HOH B 47 948 109 HOH TIP . S 4 HOH B 48 949 117 HOH TIP . S 4 HOH B 49 950 121 HOH TIP . S 4 HOH B 50 951 122 HOH TIP . S 4 HOH B 51 952 123 HOH TIP . S 4 HOH B 52 953 126 HOH TIP . S 4 HOH B 53 954 129 HOH TIP . S 4 HOH B 54 955 130 HOH TIP . S 4 HOH B 55 956 134 HOH TIP . S 4 HOH B 56 957 135 HOH TIP . S 4 HOH B 57 958 136 HOH TIP . S 4 HOH B 58 959 139 HOH TIP . S 4 HOH B 59 960 141 HOH TIP . S 4 HOH B 60 961 142 HOH TIP . S 4 HOH B 61 962 143 HOH TIP . S 4 HOH B 62 963 145 HOH TIP . S 4 HOH B 63 964 146 HOH TIP . S 4 HOH B 64 965 147 HOH TIP . S 4 HOH B 65 966 149 HOH TIP . S 4 HOH B 66 967 154 HOH TIP . S 4 HOH B 67 968 157 HOH TIP . S 4 HOH B 68 969 162 HOH TIP . S 4 HOH B 69 970 164 HOH TIP . S 4 HOH B 70 971 165 HOH TIP . S 4 HOH B 71 972 166 HOH TIP . S 4 HOH B 72 973 171 HOH TIP . T 4 HOH C 1 903 31 HOH TIP . T 4 HOH C 2 904 60 HOH TIP . T 4 HOH C 3 905 92 HOH TIP . T 4 HOH C 4 906 94 HOH TIP . T 4 HOH C 5 907 125 HOH TIP . T 4 HOH C 6 908 138 HOH TIP . T 4 HOH C 7 909 144 HOH TIP . T 4 HOH C 8 910 156 HOH TIP . T 4 HOH C 9 911 158 HOH TIP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . F 3 27.742 63.79 92.869 1 86.3 ? C1 EDO 601 A 1 HETATM 2 O O1 EDO . . . F 3 28.222 62.514 92.44 1 87.24 ? O1 EDO 601 A 1 HETATM 3 C C2 EDO . . . F 3 28.78 64.886 92.533 1 85.49 ? C2 EDO 601 A 1 HETATM 4 O O2 EDO . . . F 3 29.93 64.315 91.888 1 84.78 ? O2 EDO 601 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 343 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 4 #