data_1P4M
#
_model_server_result.job_id            n0r91MrWwgrUqir6y1D92Q 
_model_server_result.datetime_utc      '2025-03-09 03:59:51' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1p4m 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":401}' 
#
_entry.id    1P4M 
#
_exptl.entry_id    1P4M 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              456.344 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'FLAVIN MONONUCLEOTIDE' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            1P4M 
_cell.length_a            57.097 
_cell.length_b            57.097 
_cell.length_c            82.482 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1P4M 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        152 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 31 2 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A O THR 26 A THR 34 1_555 B MG MG . A MG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.127 ? 
metalc ? metalc2 A OG1 THR 26 A THR 34 1_555 B MG MG . A MG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.129 ? 
metalc ? metalc3 B MG MG . A MG 201 1_555 C O1B ADP . A ADP 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.985 ? 
metalc ? metalc4 B MG MG . A MG 201 1_555 C O2A ADP . A ADP 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.06 ? 
metalc ? metalc5 B MG MG . A MG 201 1_555 D O1P FMN . A FMN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.103 ? 
metalc ? metalc6 B MG MG . A MG 201 1_555 E O HOH . A HOH 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.144 ? 
#
_chem_comp.formula           'C17 H21 N4 O9 P' 
_chem_comp.formula_weight    456.344 
_chem_comp.id                FMN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'FLAVIN MONONUCLEOTIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'RIBOFLAVIN MONOPHOSPHATE' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 FMN sing 127 n n 
N1 C10 FMN doub 128 n n 
C2 O2 FMN doub 129 n n 
C2 N3 FMN sing 130 n n 
N3 C4 FMN sing 131 n n 
N3 HN3 FMN sing 132 n n 
C4 O4 FMN doub 133 n n 
C4 C4A FMN sing 134 n n 
C4A N5 FMN doub 135 n n 
C4A C10 FMN sing 136 n n 
N5 C5A FMN sing 137 n n 
C5A C6 FMN doub 138 n y 
C5A C9A FMN sing 139 n y 
C6 C7 FMN sing 140 n y 
C6 H6 FMN sing 141 n n 
C7 C7M FMN sing 142 n n 
C7 C8 FMN doub 143 n y 
C7M HM71 FMN sing 144 n n 
C7M HM72 FMN sing 145 n n 
C7M HM73 FMN sing 146 n n 
C8 C8M FMN sing 147 n n 
C8 C9 FMN sing 148 n y 
C8M HM81 FMN sing 149 n n 
C8M HM82 FMN sing 150 n n 
C8M HM83 FMN sing 151 n n 
C9 C9A FMN doub 152 n y 
C9 H9 FMN sing 153 n n 
C9A N10 FMN sing 154 n n 
N10 C10 FMN sing 155 n n 
N10 C1' FMN sing 156 n n 
C1' C2' FMN sing 157 n n 
C1' "H1'1" FMN sing 158 n n 
C1' "H1'2" FMN sing 159 n n 
C2' O2' FMN sing 160 n n 
C2' C3' FMN sing 161 n n 
C2' H2' FMN sing 162 n n 
O2' HO2' FMN sing 163 n n 
C3' O3' FMN sing 164 n n 
C3' C4' FMN sing 165 n n 
C3' H3' FMN sing 166 n n 
O3' HO3' FMN sing 167 n n 
C4' O4' FMN sing 168 n n 
C4' C5' FMN sing 169 n n 
C4' H4' FMN sing 170 n n 
O4' HO4' FMN sing 171 n n 
C5' O5' FMN sing 172 n n 
C5' "H5'1" FMN sing 173 n n 
C5' "H5'2" FMN sing 174 n n 
O5' P FMN sing 175 n n 
P O1P FMN doub 176 n n 
P O2P FMN sing 177 n n 
P O3P FMN sing 178 n n 
O2P HOP2 FMN sing 179 n n 
O3P HOP3 FMN sing 180 n n 
#
_atom_sites.entry_id                     1P4M 
_atom_sites.fract_transf_matrix[1][1]    0.017514 
_atom_sites.fract_transf_matrix[1][2]    0.010112 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.020223 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012124 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 MG A 1 201 201 MG MG . 
C 3 ADP A 1 301 301 ADP ADP . 
D 4 FMN A 1 401 401 FMN FMN . 
E 5 HOH A 1 501 501 HOH HOH . 
E 5 HOH A 2 502 502 HOH HOH . 
E 5 HOH A 3 503 503 HOH HOH . 
E 5 HOH A 4 504 504 HOH HOH . 
E 5 HOH A 5 505 505 HOH HOH . 
E 5 HOH A 6 506 506 HOH HOH . 
E 5 HOH A 7 507 507 HOH HOH . 
E 5 HOH A 8 508 508 HOH HOH . 
E 5 HOH A 9 509 509 HOH HOH . 
E 5 HOH A 10 510 510 HOH HOH . 
E 5 HOH A 11 511 511 HOH HOH . 
E 5 HOH A 12 512 512 HOH HOH . 
E 5 HOH A 13 513 513 HOH HOH . 
E 5 HOH A 14 514 514 HOH HOH . 
E 5 HOH A 15 515 515 HOH HOH . 
E 5 HOH A 16 516 516 HOH HOH . 
E 5 HOH A 17 517 517 HOH HOH . 
E 5 HOH A 18 518 518 HOH HOH . 
E 5 HOH A 19 519 519 HOH HOH . 
E 5 HOH A 20 520 520 HOH HOH . 
E 5 HOH A 21 521 521 HOH HOH . 
E 5 HOH A 22 522 522 HOH HOH . 
E 5 HOH A 23 523 523 HOH HOH . 
E 5 HOH A 24 524 524 HOH HOH . 
E 5 HOH A 25 525 525 HOH HOH . 
E 5 HOH A 26 526 526 HOH HOH . 
E 5 HOH A 27 527 527 HOH HOH . 
E 5 HOH A 28 528 528 HOH HOH . 
E 5 HOH A 29 529 529 HOH HOH . 
E 5 HOH A 30 530 530 HOH HOH . 
E 5 HOH A 31 531 531 HOH HOH . 
E 5 HOH A 32 532 532 HOH HOH . 
E 5 HOH A 33 533 533 HOH HOH . 
E 5 HOH A 34 534 534 HOH HOH . 
E 5 HOH A 35 535 535 HOH HOH . 
E 5 HOH A 36 536 536 HOH HOH . 
E 5 HOH A 37 537 537 HOH HOH . 
E 5 HOH A 38 538 538 HOH HOH . 
E 5 HOH A 39 539 539 HOH HOH . 
E 5 HOH A 40 540 540 HOH HOH . 
E 5 HOH A 41 541 541 HOH HOH . 
E 5 HOH A 42 542 542 HOH HOH . 
E 5 HOH A 43 543 543 HOH HOH . 
E 5 HOH A 44 544 544 HOH HOH . 
E 5 HOH A 45 545 545 HOH HOH . 
E 5 HOH A 46 546 546 HOH HOH . 
E 5 HOH A 47 547 547 HOH HOH . 
E 5 HOH A 48 548 548 HOH HOH . 
E 5 HOH A 49 549 549 HOH HOH . 
E 5 HOH A 50 550 550 HOH HOH . 
E 5 HOH A 51 551 551 HOH HOH . 
E 5 HOH A 52 552 552 HOH HOH . 
E 5 HOH A 53 553 553 HOH HOH . 
E 5 HOH A 54 554 554 HOH HOH . 
E 5 HOH A 55 555 555 HOH HOH . 
E 5 HOH A 56 556 556 HOH HOH . 
E 5 HOH A 57 557 557 HOH HOH . 
E 5 HOH A 58 558 558 HOH HOH . 
E 5 HOH A 59 559 559 HOH HOH . 
E 5 HOH A 60 560 560 HOH HOH . 
E 5 HOH A 61 561 561 HOH HOH . 
E 5 HOH A 62 562 562 HOH HOH . 
E 5 HOH A 63 563 563 HOH HOH . 
E 5 HOH A 64 564 564 HOH HOH . 
E 5 HOH A 65 565 565 HOH HOH . 
E 5 HOH A 66 566 566 HOH HOH . 
E 5 HOH A 67 567 567 HOH HOH . 
E 5 HOH A 68 568 568 HOH HOH . 
E 5 HOH A 69 569 569 HOH HOH . 
E 5 HOH A 70 570 570 HOH HOH . 
E 5 HOH A 71 571 571 HOH HOH . 
E 5 HOH A 72 572 572 HOH HOH . 
E 5 HOH A 73 573 573 HOH HOH . 
E 5 HOH A 74 574 574 HOH HOH . 
E 5 HOH A 75 575 575 HOH HOH . 
E 5 HOH A 76 576 576 HOH HOH . 
E 5 HOH A 77 577 577 HOH HOH . 
E 5 HOH A 78 578 578 HOH HOH . 
E 5 HOH A 79 579 579 HOH HOH . 
E 5 HOH A 80 580 580 HOH HOH . 
E 5 HOH A 81 581 581 HOH HOH . 
E 5 HOH A 82 582 582 HOH HOH . 
E 5 HOH A 83 583 583 HOH HOH . 
E 5 HOH A 84 584 584 HOH HOH . 
E 5 HOH A 85 585 585 HOH HOH . 
E 5 HOH A 86 586 586 HOH HOH . 
E 5 HOH A 87 587 587 HOH HOH . 
E 5 HOH A 88 588 588 HOH HOH . 
E 5 HOH A 89 589 589 HOH HOH . 
E 5 HOH A 90 590 590 HOH HOH . 
E 5 HOH A 91 591 591 HOH HOH . 
E 5 HOH A 92 592 592 HOH HOH . 
E 5 HOH A 93 593 593 HOH HOH . 
E 5 HOH A 94 594 594 HOH HOH . 
E 5 HOH A 95 595 595 HOH HOH . 
E 5 HOH A 96 596 596 HOH HOH . 
E 5 HOH A 97 597 597 HOH HOH . 
E 5 HOH A 98 598 598 HOH HOH . 
E 5 HOH A 99 599 599 HOH HOH . 
E 5 HOH A 100 600 600 HOH HOH . 
E 5 HOH A 101 601 601 HOH HOH . 
E 5 HOH A 102 602 602 HOH HOH . 
E 5 HOH A 103 603 603 HOH HOH . 
E 5 HOH A 104 604 604 HOH HOH . 
E 5 HOH A 105 605 605 HOH HOH . 
E 5 HOH A 106 606 606 HOH HOH . 
E 5 HOH A 107 607 607 HOH HOH . 
E 5 HOH A 108 608 608 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 FMN . . . D 4 -1.793 32.287 20.879 1 46.63 ? N1 FMN 401 A 1 
HETATM 2 C C2 FMN . . . D 4 -2.724 31.77 21.777 1 47.05 ? C2 FMN 401 A 1 
HETATM 3 O O2 FMN . . . D 4 -3.771 31.234 21.414 1 49.7 ? O2 FMN 401 A 1 
HETATM 4 N N3 FMN . . . D 4 -2.479 31.827 23.12 1 43.69 ? N3 FMN 401 A 1 
HETATM 5 C C4 FMN . . . D 4 -1.319 32.387 23.607 1 42.06 ? C4 FMN 401 A 1 
HETATM 6 O O4 FMN . . . D 4 -1.123 32.384 24.819 1 35.92 ? O4 FMN 401 A 1 
HETATM 7 C C4A FMN . . . D 4 -0.388 32.918 22.723 1 43.62 ? C4A FMN 401 A 1 
HETATM 8 N N5 FMN . . . D 4 0.763 33.501 23.178 1 43.7 ? N5 FMN 401 A 1 
HETATM 9 C C5A FMN . . . D 4 1.708 34.011 22.304 1 43.63 ? C5A FMN 401 A 1 
HETATM 10 C C6 FMN . . . D 4 2.866 34.585 22.864 1 44.02 ? C6 FMN 401 A 1 
HETATM 11 C C7 FMN . . . D 4 3.861 35.116 22.05 1 42.96 ? C7 FMN 401 A 1 
HETATM 12 C C7M FMN . . . D 4 5.072 35.715 22.691 1 43.15 ? C7M FMN 401 A 1 
HETATM 13 C C8 FMN . . . D 4 3.698 35.073 20.654 1 44.64 ? C8 FMN 401 A 1 
HETATM 14 C C8M FMN . . . D 4 4.753 35.666 19.741 1 44.12 ? C8M FMN 401 A 1 
HETATM 15 C C9 FMN . . . D 4 2.528 34.497 20.105 1 44.58 ? C9 FMN 401 A 1 
HETATM 16 C C9A FMN . . . D 4 1.51 33.945 20.917 1 44.2 ? C9A FMN 401 A 1 
HETATM 17 N N10 FMN . . . D 4 0.3 33.374 20.451 1 46.38 ? N10 FMN 401 A 1 
HETATM 18 C C10 FMN . . . D 4 -0.613 32.855 21.353 1 46.09 ? C10 FMN 401 A 1 
HETATM 19 C C1' FMN . . . D 4 0.02 33.23 18.975 1 48.35 ? C1' FMN 401 A 1 
HETATM 20 C C2' FMN . . . D 4 0.291 34.213 17.865 1 50.36 ? C2' FMN 401 A 1 
HETATM 21 O O2' FMN . . . D 4 -0.596 35.29 18.026 1 54.61 ? O2' FMN 401 A 1 
HETATM 22 C C3' FMN . . . D 4 -0.087 33.398 16.615 0.3 48.83 ? C3' FMN 401 A 1 
HETATM 23 O O3' FMN . . . D 4 0.654 32.191 16.546 0.3 47.98 ? O3' FMN 401 A 1 
HETATM 24 C C4' FMN . . . D 4 0.045 34.125 15.28 0.3 47.29 ? C4' FMN 401 A 1 
HETATM 25 O O4' FMN . . . D 4 -0.8 33.496 14.339 0.3 46.94 ? O4' FMN 401 A 1 
HETATM 26 C C5' FMN . . . D 4 1.482 34.107 14.762 0.3 45.72 ? C5' FMN 401 A 1 
HETATM 27 O O5' FMN . . . D 4 1.551 33.306 13.604 1 42.81 ? O5' FMN 401 A 1 
HETATM 28 P P FMN . . . D 4 1.544 33.975 12.139 0.5 45.29 ? P FMN 401 A 1 
HETATM 29 O O1P FMN . . . D 4 2.955 34.278 11.774 1 29.37 ? O1P FMN 401 A 1 
HETATM 30 O O2P FMN . . . D 4 0.848 33.046 11.107 1 45.47 ? O2P FMN 401 A 1 
HETATM 31 O O3P FMN . . . D 4 0.708 35.278 12.209 1 49.23 ? O3P FMN 401 A 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           256 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           31 
#