data_1P4Z
#
_model_server_result.job_id            670C9UVPUji0DXHDVh5zGQ 
_model_server_result.datetime_utc      '2025-03-03 00:26:32' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1p4z 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":12}' 
#
_entry.id    1P4Z 
#
_exptl.entry_id    1P4Z 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              22.99 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'SODIUM ION' 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            1P4Z 
_cell.length_a            33.38 
_cell.length_b            33.38 
_cell.length_c            87.67 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1P4Z 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        178 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 61 2 2' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 12_545 x,x-y-1,-z+1/6 0.5 0.866025 0 0.866025 -0.5 0 0 0 -1 16.69 -28.907928 14.611667 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 B N N 
? 2 C N N 
? 2 D N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OP2 DC 2 A DC 2 1_555 B NA NA . A NA 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.825 ? 
metalc ? metalc2 A OP2 DG 4 A DG 4 1_555 C NA NA . A NA 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.944 ? 
metalc ? metalc3 B NA NA . A NA 12 1_555 E O HOH . A HOH 25 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.713 ? 
metalc ? metalc4 D NA NA . A NA 24 1_555 E O HOH . A HOH 42 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.92 ? 
hydrog WATSON-CRICK hydrog1 A N3 DC 1 A DC 1 1_555 A N1 DG 10 A DG 10 12_545 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog2 A N4 DC 1 A DC 1 1_555 A O6 DG 10 A DG 10 12_545 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog3 A O2 DC 1 A DC 1 1_555 A N2 DG 10 A DG 10 12_545 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog 'DC-DG PAIR' hydrog4 A O2 DC 2 A DC 2 1_555 A N2 DG 9 A DG 9 12_545 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog5 A N1 DA 3 A DA 3 1_555 A N3 DT 8 A DT 8 12_545 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog6 A N6 DA 3 A DA 3 1_555 A O4 DT 8 A DT 8 12_545 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog7 A N1 DG 4 A DG 4 1_555 A N3 DC 7 A DC 7 12_545 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog8 A N2 DG 4 A DG 4 1_555 A O2 DC 7 A DC 7 12_545 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog9 A O6 DG 4 A DG 4 1_555 A N4 DC 7 A DC 7 12_545 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog10 A N3 DC 7 A DC 7 1_555 A N1 DG 4 A DG 4 12_545 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog11 A N4 DC 7 A DC 7 1_555 A O6 DG 4 A DG 4 12_545 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog12 A O2 DC 7 A DC 7 1_555 A N2 DG 4 A DG 4 12_545 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog13 A N3 DT 8 A DT 8 1_555 A N1 DA 3 A DA 3 12_545 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog14 A O4 DT 8 A DT 8 1_555 A N6 DA 3 A DA 3 12_545 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog 'DG-DC PAIR' hydrog15 A N1 DG 9 A DG 9 1_555 A N3 DC 2 A DC 2 12_545 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog16 A N1 DG 10 A DG 10 1_555 A N3 DC 1 A DC 1 12_545 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog17 A N2 DG 10 A DG 10 1_555 A O2 DC 1 A DC 1 12_545 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog18 A O6 DG 10 A DG 10 1_555 A N4 DC 1 A DC 1 12_545 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
#
_chem_comp.formula           'Na 1' 
_chem_comp.formula_weight    22.99 
_chem_comp.id                NA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'SODIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     1P4Z 
_atom_sites.fract_transf_matrix[1][1]    0.029958 
_atom_sites.fract_transf_matrix[1][2]    0.017296 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.034593 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011406 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 NA A 1 12 12 NA NA . 
C 2 NA A 1 13 13 NA NA . 
D 2 NA A 1 24 24 NA NA . 
E 3 HOH A 1 11 11 HOH HOH . 
E 3 HOH A 2 14 14 HOH HOH . 
E 3 HOH A 3 15 15 HOH HOH . 
E 3 HOH A 4 16 16 HOH HOH . 
E 3 HOH A 5 17 17 HOH HOH . 
E 3 HOH A 6 18 18 HOH HOH . 
E 3 HOH A 7 19 19 HOH HOH . 
E 3 HOH A 8 20 20 HOH HOH . 
E 3 HOH A 9 21 21 HOH HOH . 
E 3 HOH A 10 22 22 HOH HOH . 
E 3 HOH A 11 23 23 HOH HOH . 
E 3 HOH A 12 25 25 HOH HOH . 
E 3 HOH A 13 26 26 HOH HOH . 
E 3 HOH A 14 27 27 HOH HOH . 
E 3 HOH A 15 28 28 HOH HOH . 
E 3 HOH A 16 29 29 HOH HOH . 
E 3 HOH A 17 30 30 HOH HOH . 
E 3 HOH A 18 31 31 HOH HOH . 
E 3 HOH A 19 32 32 HOH HOH . 
E 3 HOH A 20 33 33 HOH HOH . 
E 3 HOH A 21 34 34 HOH HOH . 
E 3 HOH A 22 35 35 HOH HOH . 
E 3 HOH A 23 36 36 HOH HOH . 
E 3 HOH A 24 37 37 HOH HOH . 
E 3 HOH A 25 38 38 HOH HOH . 
E 3 HOH A 26 39 39 HOH HOH . 
E 3 HOH A 27 40 40 HOH HOH . 
E 3 HOH A 28 41 41 HOH HOH . 
E 3 HOH A 29 42 42 HOH HOH . 
E 3 HOH A 30 43 43 HOH HOH . 
E 3 HOH A 31 44 44 HOH HOH . 
E 3 HOH A 32 45 45 HOH HOH . 
E 3 HOH A 33 46 46 HOH HOH . 
E 3 HOH A 34 47 47 HOH HOH . 
E 3 HOH A 35 48 48 HOH HOH . 
E 3 HOH A 36 49 49 HOH HOH . 
E 3 HOH A 37 50 50 HOH HOH . 
E 3 HOH A 38 51 51 HOH HOH . 
E 3 HOH A 39 52 52 HOH HOH . 
E 3 HOH A 40 53 53 HOH HOH . 
E 3 HOH A 41 54 54 HOH HOH . 
E 3 HOH A 42 55 55 HOH HOH . 
E 3 HOH A 43 56 56 HOH HOH . 
E 3 HOH A 44 57 57 HOH HOH . 
E 3 HOH A 45 58 58 HOH HOH . 
E 3 HOH A 46 59 59 HOH HOH . 
E 3 HOH A 47 60 60 HOH HOH . 
E 3 HOH A 48 61 61 HOH HOH . 
E 3 HOH A 49 62 62 HOH HOH . 
E 3 HOH A 50 63 63 HOH HOH . 
E 3 HOH A 51 64 64 HOH HOH . 
E 3 HOH A 52 65 65 HOH HOH . 
E 3 HOH A 53 66 66 HOH HOH . 
E 3 HOH A 54 67 67 HOH HOH . 
E 3 HOH A 55 68 68 HOH HOH . 
E 3 HOH A 56 69 69 HOH HOH . 
E 3 HOH A 57 70 70 HOH HOH . 
E 3 HOH A 58 71 71 HOH HOH . 
E 3 HOH A 59 72 72 HOH HOH . 
E 3 HOH A 60 73 73 HOH HOH . 
E 3 HOH A 61 74 74 HOH HOH . 
E 3 HOH A 62 75 75 HOH HOH . 
E 3 HOH A 63 76 76 HOH HOH . 
E 3 HOH A 64 77 77 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           NA 
_atom_site.label_atom_id         NA 
_atom_site.label_comp_id         NA 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         B 
_atom_site.label_entity_id       2 
_atom_site.Cartn_x               40.699 
_atom_site.Cartn_y               -8.865 
_atom_site.Cartn_z               15.215 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        1 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          NA 
_atom_site.auth_comp_id          NA 
_atom_site.auth_seq_id           12 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              6 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    1 
_model_server_stats.query_time_ms           283 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           1 
#