data_1P50
#
_model_server_result.job_id            F2Lg0eLfehb9DprioPYo4A 
_model_server_result.datetime_utc      '2024-11-25 08:24:34' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1p50 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":400}' 
#
_entry.id    1P50 
#
_exptl.entry_id    1P50 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              427.201 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-DIPHOSPHATE" 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1P50 
_cell.length_a            65.454 
_cell.length_b            71.246 
_cell.length_c            80.116 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1P50 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 C O1A ADP . A ADP 400 1_555 B MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.246 ? 
metalc ? metalc2 C O1B ADP . A ADP 400 1_555 B MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.517 ? 
metalc ? metalc3 D O1 NO3 . A NO3 401 1_555 B MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? 
metalc ? metalc4 B MG MG . A MG 402 1_555 F O HOH . A HOH 421 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.101 ? 
metalc ? metalc5 B MG MG . A MG 402 1_555 F O HOH . A HOH 473 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.088 ? 
#
_chem_comp.formula           'C10 H15 N5 O10 P2' 
_chem_comp.formula_weight    427.201 
_chem_comp.id                ADP 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              "ADENOSINE-5'-DIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PB O1B ADP doub 1 n n 
PB O2B ADP sing 2 n n 
PB O3B ADP sing 3 n n 
PB O3A ADP sing 4 n n 
O2B HOB2 ADP sing 5 n n 
O3B HOB3 ADP sing 6 n n 
PA O1A ADP doub 7 n n 
PA O2A ADP sing 8 n n 
PA O3A ADP sing 9 n n 
PA O5' ADP sing 10 n n 
O2A HOA2 ADP sing 11 n n 
O5' C5' ADP sing 12 n n 
C5' C4' ADP sing 13 n n 
C5' "H5'1" ADP sing 14 n n 
C5' "H5'2" ADP sing 15 n n 
C4' O4' ADP sing 16 n n 
C4' C3' ADP sing 17 n n 
C4' H4' ADP sing 18 n n 
O4' C1' ADP sing 19 n n 
C3' O3' ADP sing 20 n n 
C3' C2' ADP sing 21 n n 
C3' H3' ADP sing 22 n n 
O3' HO3' ADP sing 23 n n 
C2' O2' ADP sing 24 n n 
C2' C1' ADP sing 25 n n 
C2' H2' ADP sing 26 n n 
O2' HO2' ADP sing 27 n n 
C1' N9 ADP sing 28 n n 
C1' H1' ADP sing 29 n n 
N9 C8 ADP sing 30 n y 
N9 C4 ADP sing 31 n y 
C8 N7 ADP doub 32 n y 
C8 H8 ADP sing 33 n n 
N7 C5 ADP sing 34 n y 
C5 C6 ADP sing 35 n y 
C5 C4 ADP doub 36 n y 
C6 N6 ADP sing 37 n n 
C6 N1 ADP doub 38 n y 
N6 HN61 ADP sing 39 n n 
N6 HN62 ADP sing 40 n n 
N1 C2 ADP sing 41 n y 
C2 N3 ADP doub 42 n y 
C2 H2 ADP sing 43 n n 
N3 C4 ADP sing 44 n y 
#
_atom_sites.entry_id                     1P50 
_atom_sites.fract_transf_matrix[1][1]    0.015278 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014036 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012482 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 MG A 1 402 402 MG MAG . 
C 3 ADP A 1 400 400 ADP ADP . 
D 4 NO3 A 1 401 401 NO3 NO3 . 
E 5 ARG A 1 403 403 ARG ARG . 
F 6 HOH A 1 404 1 HOH TIP . 
F 6 HOH A 2 405 2 HOH TIP . 
F 6 HOH A 3 406 3 HOH TIP . 
F 6 HOH A 4 407 4 HOH TIP . 
F 6 HOH A 5 408 5 HOH TIP . 
F 6 HOH A 6 409 6 HOH TIP . 
F 6 HOH A 7 410 7 HOH TIP . 
F 6 HOH A 8 411 8 HOH TIP . 
F 6 HOH A 9 412 9 HOH TIP . 
F 6 HOH A 10 413 10 HOH TIP . 
F 6 HOH A 11 414 11 HOH TIP . 
F 6 HOH A 12 415 12 HOH TIP . 
F 6 HOH A 13 416 13 HOH TIP . 
F 6 HOH A 14 417 14 HOH TIP . 
F 6 HOH A 15 418 15 HOH TIP . 
F 6 HOH A 16 419 16 HOH TIP . 
F 6 HOH A 17 420 17 HOH TIP . 
F 6 HOH A 18 421 18 HOH TIP . 
F 6 HOH A 19 422 19 HOH TIP . 
F 6 HOH A 20 423 20 HOH TIP . 
F 6 HOH A 21 424 21 HOH TIP . 
F 6 HOH A 22 425 22 HOH TIP . 
F 6 HOH A 23 426 23 HOH TIP . 
F 6 HOH A 24 427 24 HOH TIP . 
F 6 HOH A 25 428 25 HOH TIP . 
F 6 HOH A 26 429 26 HOH TIP . 
F 6 HOH A 27 430 27 HOH TIP . 
F 6 HOH A 28 431 28 HOH TIP . 
F 6 HOH A 29 432 29 HOH TIP . 
F 6 HOH A 30 433 30 HOH TIP . 
F 6 HOH A 31 434 31 HOH TIP . 
F 6 HOH A 32 435 32 HOH TIP . 
F 6 HOH A 33 436 33 HOH TIP . 
F 6 HOH A 34 437 34 HOH TIP . 
F 6 HOH A 35 438 35 HOH TIP . 
F 6 HOH A 36 439 36 HOH TIP . 
F 6 HOH A 37 440 37 HOH TIP . 
F 6 HOH A 38 441 38 HOH TIP . 
F 6 HOH A 39 442 39 HOH TIP . 
F 6 HOH A 40 443 40 HOH TIP . 
F 6 HOH A 41 444 41 HOH TIP . 
F 6 HOH A 42 445 42 HOH TIP . 
F 6 HOH A 43 446 43 HOH TIP . 
F 6 HOH A 44 447 44 HOH TIP . 
F 6 HOH A 45 448 45 HOH TIP . 
F 6 HOH A 46 449 46 HOH TIP . 
F 6 HOH A 47 450 47 HOH TIP . 
F 6 HOH A 48 451 48 HOH TIP . 
F 6 HOH A 49 452 49 HOH TIP . 
F 6 HOH A 50 453 50 HOH TIP . 
F 6 HOH A 51 454 51 HOH TIP . 
F 6 HOH A 52 455 52 HOH TIP . 
F 6 HOH A 53 456 53 HOH TIP . 
F 6 HOH A 54 457 54 HOH TIP . 
F 6 HOH A 55 458 55 HOH TIP . 
F 6 HOH A 56 459 56 HOH TIP . 
F 6 HOH A 57 460 57 HOH TIP . 
F 6 HOH A 58 461 58 HOH TIP . 
F 6 HOH A 59 462 59 HOH TIP . 
F 6 HOH A 60 463 60 HOH TIP . 
F 6 HOH A 61 464 61 HOH TIP . 
F 6 HOH A 62 465 62 HOH TIP . 
F 6 HOH A 63 466 63 HOH TIP . 
F 6 HOH A 64 467 64 HOH TIP . 
F 6 HOH A 65 468 65 HOH TIP . 
F 6 HOH A 66 469 66 HOH TIP . 
F 6 HOH A 67 470 67 HOH TIP . 
F 6 HOH A 68 471 68 HOH TIP . 
F 6 HOH A 69 472 69 HOH TIP . 
F 6 HOH A 70 473 70 HOH TIP . 
F 6 HOH A 71 474 71 HOH TIP . 
F 6 HOH A 72 475 72 HOH TIP . 
F 6 HOH A 73 476 73 HOH TIP . 
F 6 HOH A 74 477 74 HOH TIP . 
F 6 HOH A 75 478 75 HOH TIP . 
F 6 HOH A 76 479 76 HOH TIP . 
F 6 HOH A 77 480 77 HOH TIP . 
F 6 HOH A 78 481 78 HOH TIP . 
F 6 HOH A 79 482 79 HOH TIP . 
F 6 HOH A 80 483 80 HOH TIP . 
F 6 HOH A 81 484 81 HOH TIP . 
F 6 HOH A 82 485 82 HOH TIP . 
F 6 HOH A 83 486 83 HOH TIP . 
F 6 HOH A 84 487 84 HOH TIP . 
F 6 HOH A 85 488 85 HOH TIP . 
F 6 HOH A 86 489 86 HOH TIP . 
F 6 HOH A 87 490 87 HOH TIP . 
F 6 HOH A 88 491 88 HOH TIP . 
F 6 HOH A 89 492 89 HOH TIP . 
F 6 HOH A 90 493 90 HOH TIP . 
F 6 HOH A 91 494 91 HOH TIP . 
F 6 HOH A 92 495 92 HOH TIP . 
F 6 HOH A 93 496 93 HOH TIP . 
F 6 HOH A 94 497 94 HOH TIP . 
F 6 HOH A 95 498 95 HOH TIP . 
F 6 HOH A 96 499 96 HOH TIP . 
F 6 HOH A 97 500 97 HOH TIP . 
F 6 HOH A 98 501 98 HOH TIP . 
F 6 HOH A 99 502 99 HOH TIP . 
F 6 HOH A 100 503 100 HOH TIP . 
F 6 HOH A 101 504 101 HOH TIP . 
F 6 HOH A 102 505 102 HOH TIP . 
F 6 HOH A 103 506 103 HOH TIP . 
F 6 HOH A 104 507 104 HOH TIP . 
F 6 HOH A 105 508 105 HOH TIP . 
F 6 HOH A 106 509 106 HOH TIP . 
F 6 HOH A 107 510 107 HOH TIP . 
F 6 HOH A 108 511 108 HOH TIP . 
F 6 HOH A 109 512 109 HOH TIP . 
F 6 HOH A 110 513 110 HOH TIP . 
F 6 HOH A 111 514 111 HOH TIP . 
F 6 HOH A 112 515 112 HOH TIP . 
F 6 HOH A 113 516 113 HOH TIP . 
F 6 HOH A 114 517 114 HOH TIP . 
F 6 HOH A 115 518 115 HOH TIP . 
F 6 HOH A 116 519 116 HOH TIP . 
F 6 HOH A 117 520 117 HOH TIP . 
F 6 HOH A 118 521 118 HOH TIP . 
F 6 HOH A 119 522 119 HOH TIP . 
F 6 HOH A 120 523 120 HOH TIP . 
F 6 HOH A 121 524 121 HOH TIP . 
F 6 HOH A 122 525 122 HOH TIP . 
F 6 HOH A 123 526 123 HOH TIP . 
F 6 HOH A 124 527 124 HOH TIP . 
F 6 HOH A 125 528 125 HOH TIP . 
F 6 HOH A 126 529 126 HOH TIP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PB ADP . . . C 3 22.709 10.445 38.228 1 17.9 ? PB ADP 400 A 1 
HETATM 2 O O1B ADP . . . C 3 23.774 10.147 37.232 1 18.4 ? O1B ADP 400 A 1 
HETATM 3 O O2B ADP . . . C 3 21.515 10.985 37.527 1 18.98 ? O2B ADP 400 A 1 
HETATM 4 O O3B ADP . . . C 3 22.32 9.295 39.067 1 18.5 ? O3B ADP 400 A 1 
HETATM 5 P PA ADP . . . C 3 24.496 12.527 39.405 1 19.12 ? PA ADP 400 A 1 
HETATM 6 O O1A ADP . . . C 3 25.634 12.068 38.561 1 18.55 ? O1A ADP 400 A 1 
HETATM 7 O O2A ADP . . . C 3 24.829 12.711 40.842 1 19.04 ? O2A ADP 400 A 1 
HETATM 8 O O3A ADP . . . C 3 23.227 11.521 39.313 1 18.33 ? O3A ADP 400 A 1 
HETATM 9 O O5' ADP . . . C 3 23.926 13.949 38.961 1 17.97 ? O5' ADP 400 A 1 
HETATM 10 C C5' ADP . . . C 3 23.507 14.169 37.653 1 18.38 ? C5' ADP 400 A 1 
HETATM 11 C C4' ADP . . . C 3 22.542 15.312 37.895 1 18.77 ? C4' ADP 400 A 1 
HETATM 12 O O4' ADP . . . C 3 21.387 14.912 38.635 1 19.15 ? O4' ADP 400 A 1 
HETATM 13 C C3' ADP . . . C 3 23.142 16.506 38.633 1 19.16 ? C3' ADP 400 A 1 
HETATM 14 O O3' ADP . . . C 3 22.969 17.674 37.78 1 19.98 ? O3' ADP 400 A 1 
HETATM 15 C C2' ADP . . . C 3 22.329 16.599 39.925 1 19.37 ? C2' ADP 400 A 1 
HETATM 16 O O2' ADP . . . C 3 22.212 17.932 40.476 1 19.69 ? O2' ADP 400 A 1 
HETATM 17 C C1' ADP . . . C 3 21.021 16.06 39.386 1 19.11 ? C1' ADP 400 A 1 
HETATM 18 N N9 ADP . . . C 3 20.012 15.765 40.419 1 18.43 ? N9 ADP 400 A 1 
HETATM 19 C C8 ADP . . . C 3 19.821 14.634 41.123 1 18.68 ? C8 ADP 400 A 1 
HETATM 20 N N7 ADP . . . C 3 18.79 14.766 41.963 1 18.17 ? N7 ADP 400 A 1 
HETATM 21 C C5 ADP . . . C 3 18.377 16.002 41.747 1 18.33 ? C5 ADP 400 A 1 
HETATM 22 C C6 ADP . . . C 3 17.223 16.514 42.291 1 18.4 ? C6 ADP 400 A 1 
HETATM 23 N N6 ADP . . . C 3 16.578 15.91 43.293 1 18.31 ? N6 ADP 400 A 1 
HETATM 24 N N1 ADP . . . C 3 16.849 17.7 41.777 1 19.05 ? N1 ADP 400 A 1 
HETATM 25 C C2 ADP . . . C 3 17.557 18.293 40.829 1 18.38 ? C2 ADP 400 A 1 
HETATM 26 N N3 ADP . . . C 3 18.669 17.803 40.314 1 18.81 ? N3 ADP 400 A 1 
HETATM 27 C C4 ADP . . . C 3 19.093 16.637 40.777 1 18.39 ? C4 ADP 400 A 1 
#
_model_server_stats.io_time_ms              52 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           264 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           27 
#