data_1P50 # _model_server_result.job_id QiW12xI1RuciN-KrOIqZ4g _model_server_result.datetime_utc '2024-11-25 08:38:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1p50 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":403}' # _entry.id 1P50 # _exptl.entry_id 1P50 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 175.209 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description ARGININE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1P50 _cell.length_a 65.454 _cell.length_b 71.246 _cell.length_c 80.116 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1P50 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 C O1A ADP . A ADP 400 1_555 B MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.246 ? metalc ? metalc2 C O1B ADP . A ADP 400 1_555 B MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.517 ? metalc ? metalc3 D O1 NO3 . A NO3 401 1_555 B MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? metalc ? metalc4 B MG MG . A MG 402 1_555 F O HOH . A HOH 421 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.101 ? metalc ? metalc5 B MG MG . A MG 402 1_555 F O HOH . A HOH 473 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.088 ? # _chem_comp.formula 'C6 H15 N4 O2 1' _chem_comp.formula_weight 175.209 _chem_comp.id ARG _chem_comp.mon_nstd_flag y _chem_comp.name ARGININE _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA ARG sing 57 n n N H ARG sing 58 n n N H2 ARG sing 59 n n CA C ARG sing 60 n n CA CB ARG sing 61 n n CA HA ARG sing 62 n n C O ARG doub 63 n n C OXT ARG sing 64 n n CB CG ARG sing 65 n n CB HB2 ARG sing 66 n n CB HB3 ARG sing 67 n n CG CD ARG sing 68 n n CG HG2 ARG sing 69 n n CG HG3 ARG sing 70 n n CD NE ARG sing 71 n n CD HD2 ARG sing 72 n n CD HD3 ARG sing 73 n n NE CZ ARG sing 74 n n NE HE ARG sing 75 n n CZ NH1 ARG sing 76 n n CZ NH2 ARG doub 77 n n NH1 HH11 ARG sing 78 n n NH1 HH12 ARG sing 79 n n NH2 HH21 ARG sing 80 n n NH2 HH22 ARG sing 81 n n OXT HXT ARG sing 82 n n # _atom_sites.entry_id 1P50 _atom_sites.fract_transf_matrix[1][1] 0.015278 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014036 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012482 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG A 1 402 402 MG MAG . C 3 ADP A 1 400 400 ADP ADP . D 4 NO3 A 1 401 401 NO3 NO3 . E 5 ARG A 1 403 403 ARG ARG . F 6 HOH A 1 404 1 HOH TIP . F 6 HOH A 2 405 2 HOH TIP . F 6 HOH A 3 406 3 HOH TIP . F 6 HOH A 4 407 4 HOH TIP . F 6 HOH A 5 408 5 HOH TIP . F 6 HOH A 6 409 6 HOH TIP . F 6 HOH A 7 410 7 HOH TIP . F 6 HOH A 8 411 8 HOH TIP . F 6 HOH A 9 412 9 HOH TIP . F 6 HOH A 10 413 10 HOH TIP . F 6 HOH A 11 414 11 HOH TIP . F 6 HOH A 12 415 12 HOH TIP . F 6 HOH A 13 416 13 HOH TIP . F 6 HOH A 14 417 14 HOH TIP . F 6 HOH A 15 418 15 HOH TIP . F 6 HOH A 16 419 16 HOH TIP . F 6 HOH A 17 420 17 HOH TIP . F 6 HOH A 18 421 18 HOH TIP . F 6 HOH A 19 422 19 HOH TIP . F 6 HOH A 20 423 20 HOH TIP . F 6 HOH A 21 424 21 HOH TIP . F 6 HOH A 22 425 22 HOH TIP . F 6 HOH A 23 426 23 HOH TIP . F 6 HOH A 24 427 24 HOH TIP . F 6 HOH A 25 428 25 HOH TIP . F 6 HOH A 26 429 26 HOH TIP . F 6 HOH A 27 430 27 HOH TIP . F 6 HOH A 28 431 28 HOH TIP . F 6 HOH A 29 432 29 HOH TIP . F 6 HOH A 30 433 30 HOH TIP . F 6 HOH A 31 434 31 HOH TIP . F 6 HOH A 32 435 32 HOH TIP . F 6 HOH A 33 436 33 HOH TIP . F 6 HOH A 34 437 34 HOH TIP . F 6 HOH A 35 438 35 HOH TIP . F 6 HOH A 36 439 36 HOH TIP . F 6 HOH A 37 440 37 HOH TIP . F 6 HOH A 38 441 38 HOH TIP . F 6 HOH A 39 442 39 HOH TIP . F 6 HOH A 40 443 40 HOH TIP . F 6 HOH A 41 444 41 HOH TIP . F 6 HOH A 42 445 42 HOH TIP . F 6 HOH A 43 446 43 HOH TIP . F 6 HOH A 44 447 44 HOH TIP . F 6 HOH A 45 448 45 HOH TIP . F 6 HOH A 46 449 46 HOH TIP . F 6 HOH A 47 450 47 HOH TIP . F 6 HOH A 48 451 48 HOH TIP . F 6 HOH A 49 452 49 HOH TIP . F 6 HOH A 50 453 50 HOH TIP . F 6 HOH A 51 454 51 HOH TIP . F 6 HOH A 52 455 52 HOH TIP . F 6 HOH A 53 456 53 HOH TIP . F 6 HOH A 54 457 54 HOH TIP . F 6 HOH A 55 458 55 HOH TIP . F 6 HOH A 56 459 56 HOH TIP . F 6 HOH A 57 460 57 HOH TIP . F 6 HOH A 58 461 58 HOH TIP . F 6 HOH A 59 462 59 HOH TIP . F 6 HOH A 60 463 60 HOH TIP . F 6 HOH A 61 464 61 HOH TIP . F 6 HOH A 62 465 62 HOH TIP . F 6 HOH A 63 466 63 HOH TIP . F 6 HOH A 64 467 64 HOH TIP . F 6 HOH A 65 468 65 HOH TIP . F 6 HOH A 66 469 66 HOH TIP . F 6 HOH A 67 470 67 HOH TIP . F 6 HOH A 68 471 68 HOH TIP . F 6 HOH A 69 472 69 HOH TIP . F 6 HOH A 70 473 70 HOH TIP . F 6 HOH A 71 474 71 HOH TIP . F 6 HOH A 72 475 72 HOH TIP . F 6 HOH A 73 476 73 HOH TIP . F 6 HOH A 74 477 74 HOH TIP . F 6 HOH A 75 478 75 HOH TIP . F 6 HOH A 76 479 76 HOH TIP . F 6 HOH A 77 480 77 HOH TIP . F 6 HOH A 78 481 78 HOH TIP . F 6 HOH A 79 482 79 HOH TIP . F 6 HOH A 80 483 80 HOH TIP . F 6 HOH A 81 484 81 HOH TIP . F 6 HOH A 82 485 82 HOH TIP . F 6 HOH A 83 486 83 HOH TIP . F 6 HOH A 84 487 84 HOH TIP . F 6 HOH A 85 488 85 HOH TIP . F 6 HOH A 86 489 86 HOH TIP . F 6 HOH A 87 490 87 HOH TIP . F 6 HOH A 88 491 88 HOH TIP . F 6 HOH A 89 492 89 HOH TIP . F 6 HOH A 90 493 90 HOH TIP . F 6 HOH A 91 494 91 HOH TIP . F 6 HOH A 92 495 92 HOH TIP . F 6 HOH A 93 496 93 HOH TIP . F 6 HOH A 94 497 94 HOH TIP . F 6 HOH A 95 498 95 HOH TIP . F 6 HOH A 96 499 96 HOH TIP . F 6 HOH A 97 500 97 HOH TIP . F 6 HOH A 98 501 98 HOH TIP . F 6 HOH A 99 502 99 HOH TIP . F 6 HOH A 100 503 100 HOH TIP . F 6 HOH A 101 504 101 HOH TIP . F 6 HOH A 102 505 102 HOH TIP . F 6 HOH A 103 506 103 HOH TIP . F 6 HOH A 104 507 104 HOH TIP . F 6 HOH A 105 508 105 HOH TIP . F 6 HOH A 106 509 106 HOH TIP . F 6 HOH A 107 510 107 HOH TIP . F 6 HOH A 108 511 108 HOH TIP . F 6 HOH A 109 512 109 HOH TIP . F 6 HOH A 110 513 110 HOH TIP . F 6 HOH A 111 514 111 HOH TIP . F 6 HOH A 112 515 112 HOH TIP . F 6 HOH A 113 516 113 HOH TIP . F 6 HOH A 114 517 114 HOH TIP . F 6 HOH A 115 518 115 HOH TIP . F 6 HOH A 116 519 116 HOH TIP . F 6 HOH A 117 520 117 HOH TIP . F 6 HOH A 118 521 118 HOH TIP . F 6 HOH A 119 522 119 HOH TIP . F 6 HOH A 120 523 120 HOH TIP . F 6 HOH A 121 524 121 HOH TIP . F 6 HOH A 122 525 122 HOH TIP . F 6 HOH A 123 526 123 HOH TIP . F 6 HOH A 124 527 124 HOH TIP . F 6 HOH A 125 528 125 HOH TIP . F 6 HOH A 126 529 126 HOH TIP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N ARG . . . E 5 33.471 5.425 40.041 1 16.41 ? N ARG 403 A 1 HETATM 2 C CA ARG . . . E 5 33.001 6.479 40.933 1 16.41 ? CA ARG 403 A 1 HETATM 3 C C ARG . . . E 5 33.388 6.213 42.386 1 16.41 ? C ARG 403 A 1 HETATM 4 O O ARG . . . E 5 33.693 5.08 42.752 1 16.41 ? O ARG 403 A 1 HETATM 5 C CB ARG . . . E 5 31.476 6.634 40.828 1 16.41 ? CB ARG 403 A 1 HETATM 6 C CG ARG . . . E 5 30.677 5.399 41.225 1 16.41 ? CG ARG 403 A 1 HETATM 7 C CD ARG . . . E 5 29.257 5.778 41.618 1 16.41 ? CD ARG 403 A 1 HETATM 8 N NE ARG . . . E 5 28.639 6.668 40.639 1 16.41 ? NE ARG 403 A 1 HETATM 9 C CZ ARG . . . E 5 28.264 6.291 39.425 1 16.41 ? CZ ARG 403 A 1 HETATM 10 N NH1 ARG . . . E 5 28.436 5.035 39.039 1 16.41 ? NH1 ARG 403 A 1 HETATM 11 N NH2 ARG . . . E 5 27.737 7.172 38.592 1 16.41 ? NH2 ARG 403 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 273 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 11 #