data_1P54
#
_model_server_result.job_id            3OD2V2IKnRyfiJHmlN3A6g 
_model_server_result.datetime_utc      '2025-02-26 22:35:16' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1p54 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":67}' 
#
_entry.id    1P54 
#
_exptl.entry_id    1P54 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              40.078 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'CALCIUM ION' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          106.78 
_cell.angle_gamma         90 
_cell.entry_id            1P54 
_cell.length_a            64.84 
_cell.length_b            22.58 
_cell.length_c            38.07 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1P54 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A O3' DC 7 A DC 7 1_555 A P BRU 8 A BRU 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.613 ? 
covale ? covale2 A O3' BRU 8 A BRU 8 1_555 A P DG 9 A DG 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.609 ? 
covale ? covale3 B O3' DC 7 B DC 17 1_555 B P BRU 8 B BRU 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.609 ? 
covale ? covale4 B O3' BRU 8 B BRU 18 1_555 B P DG 9 B DG 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.612 ? 
metalc ? metalc1 A OP2 DA 6 A DA 6 1_555 C NA NA . A NA 37 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.777 ? 
metalc ? metalc2 E O HOH . A HOH 27 1_555 D CA CA . A CA 67 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.303 ? 
metalc ? metalc3 D CA CA . A CA 67 1_555 E O HOH . A HOH 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.278 ? 
metalc ? metalc4 D CA CA . A CA 67 1_555 E O HOH . A HOH 81 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.242 ? 
metalc ? metalc5 D CA CA . A CA 67 1_555 E O HOH . A HOH 82 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.948 ? 
metalc ? metalc6 D CA CA . A CA 67 1_555 F O HOH . B HOH 69 2_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.119 ? 
metalc ? metalc7 D CA CA . A CA 67 1_555 F O HOH . B HOH 75 2_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.011 ? 
metalc ? metalc8 D CA CA . A CA 67 1_555 F O HOH . B HOH 93 2_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.261 ? 
hydrog WATSON-CRICK hydrog1 A N3 DC 1 A DC 1 1_555 B N1 DG 10 B DG 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog2 A N4 DC 1 A DC 1 1_555 B O6 DG 10 B DG 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog3 A O2 DC 1 A DC 1 1_555 B N2 DG 10 B DG 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog4 A N3 DC 2 A DC 2 1_555 B N1 DG 9 B DG 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog5 A N4 DC 2 A DC 2 1_555 B O6 DG 9 B DG 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog6 A O2 DC 2 A DC 2 1_555 B N2 DG 9 B DG 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog7 A N1 DA 3 A DA 3 1_555 B N3 BRU 8 B BRU 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog8 A N6 DA 3 A DA 3 1_555 B O4 BRU 8 B BRU 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog9 A N1 DG 4 A DG 4 1_555 B N3 DC 7 B DC 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog10 A N2 DG 4 A DG 4 1_555 B O2 DC 7 B DC 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog11 A O6 DG 4 A DG 4 1_555 B N4 DC 7 B DC 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog12 A N3 DT 5 A DT 5 1_555 B N1 DA 6 B DA 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog13 A O4 DT 5 A DT 5 1_555 B N6 DA 6 B DA 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog14 A N1 DA 6 A DA 6 1_555 B N3 DT 5 B DT 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog15 A N6 DA 6 A DA 6 1_555 B O4 DT 5 B DT 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
#
_chem_comp.formula           'Ca 2' 
_chem_comp.formula_weight    40.078 
_chem_comp.id                CA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'CALCIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     1P54 
_atom_sites.fract_transf_matrix[1][1]    0.015423 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.004649 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.044293 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.027436 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 NA A 1 37 37 NA NA . 
D 3 CA A 1 67 67 CA CA . 
E 4 HOH A 1 21 21 HOH HOH . 
E 4 HOH A 2 23 23 HOH HOH . 
E 4 HOH A 3 24 24 HOH HOH . 
E 4 HOH A 4 25 25 HOH HOH . 
E 4 HOH A 5 26 26 HOH HOH . 
E 4 HOH A 6 27 27 HOH HOH . 
E 4 HOH A 7 29 29 HOH HOH . 
E 4 HOH A 8 30 30 HOH HOH . 
E 4 HOH A 9 32 32 HOH HOH . 
E 4 HOH A 10 33 33 HOH HOH . 
E 4 HOH A 11 34 34 HOH HOH . 
E 4 HOH A 12 36 36 HOH HOH . 
E 4 HOH A 13 38 38 HOH HOH . 
E 4 HOH A 14 39 39 HOH HOH . 
E 4 HOH A 15 40 40 HOH HOH . 
E 4 HOH A 16 42 42 HOH HOH . 
E 4 HOH A 17 43 43 HOH HOH . 
E 4 HOH A 18 44 44 HOH HOH . 
E 4 HOH A 19 46 46 HOH HOH . 
E 4 HOH A 20 50 50 HOH HOH . 
E 4 HOH A 21 52 52 HOH HOH . 
E 4 HOH A 22 53 53 HOH HOH . 
E 4 HOH A 23 54 54 HOH HOH . 
E 4 HOH A 24 55 55 HOH HOH . 
E 4 HOH A 25 57 57 HOH HOH . 
E 4 HOH A 26 61 61 HOH HOH . 
E 4 HOH A 27 62 62 HOH HOH . 
E 4 HOH A 28 64 64 HOH HOH . 
E 4 HOH A 29 65 65 HOH HOH . 
E 4 HOH A 30 66 66 HOH HOH . 
E 4 HOH A 31 68 68 HOH HOH . 
E 4 HOH A 32 70 70 HOH HOH . 
E 4 HOH A 33 72 72 HOH HOH . 
E 4 HOH A 34 73 73 HOH HOH . 
E 4 HOH A 35 76 76 HOH HOH . 
E 4 HOH A 36 77 77 HOH HOH . 
E 4 HOH A 37 79 79 HOH HOH . 
E 4 HOH A 38 80 80 HOH HOH . 
E 4 HOH A 39 81 81 HOH HOH . 
E 4 HOH A 40 82 82 HOH HOH . 
E 4 HOH A 41 85 85 HOH HOH . 
E 4 HOH A 42 86 86 HOH HOH . 
E 4 HOH A 43 87 87 HOH HOH . 
E 4 HOH A 44 88 88 HOH HOH . 
E 4 HOH A 45 90 90 HOH HOH . 
E 4 HOH A 46 96 96 HOH HOH . 
E 4 HOH A 47 100 100 HOH HOH . 
E 4 HOH A 48 101 101 HOH HOH . 
E 4 HOH A 49 103 103 HOH HOH . 
E 4 HOH A 50 107 107 HOH HOH . 
F 4 HOH B 1 22 22 HOH HOH . 
F 4 HOH B 2 28 28 HOH HOH . 
F 4 HOH B 3 31 31 HOH HOH . 
F 4 HOH B 4 35 35 HOH HOH . 
F 4 HOH B 5 41 41 HOH HOH . 
F 4 HOH B 6 45 45 HOH HOH . 
F 4 HOH B 7 47 47 HOH HOH . 
F 4 HOH B 8 48 48 HOH HOH . 
F 4 HOH B 9 49 49 HOH HOH . 
F 4 HOH B 10 51 51 HOH HOH . 
F 4 HOH B 11 56 56 HOH HOH . 
F 4 HOH B 12 58 58 HOH HOH . 
F 4 HOH B 13 59 59 HOH HOH . 
F 4 HOH B 14 60 60 HOH HOH . 
F 4 HOH B 15 63 63 HOH HOH . 
F 4 HOH B 16 69 69 HOH HOH . 
F 4 HOH B 17 71 71 HOH HOH . 
F 4 HOH B 18 74 74 HOH HOH . 
F 4 HOH B 19 75 75 HOH HOH . 
F 4 HOH B 20 78 78 HOH HOH . 
F 4 HOH B 21 83 83 HOH HOH . 
F 4 HOH B 22 84 84 HOH HOH . 
F 4 HOH B 23 89 89 HOH HOH . 
F 4 HOH B 24 91 91 HOH HOH . 
F 4 HOH B 25 92 92 HOH HOH . 
F 4 HOH B 26 93 93 HOH HOH . 
F 4 HOH B 27 94 94 HOH HOH . 
F 4 HOH B 28 95 95 HOH HOH . 
F 4 HOH B 29 97 97 HOH HOH . 
F 4 HOH B 30 98 98 HOH HOH . 
F 4 HOH B 31 99 99 HOH HOH . 
F 4 HOH B 32 102 102 HOH HOH . 
F 4 HOH B 33 104 104 HOH HOH . 
F 4 HOH B 34 105 105 HOH HOH . 
F 4 HOH B 35 106 106 HOH HOH . 
F 4 HOH B 36 108 108 HOH HOH . 
F 4 HOH B 37 109 109 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           CA 
_atom_site.label_atom_id         CA 
_atom_site.label_comp_id         CA 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         D 
_atom_site.label_entity_id       3 
_atom_site.Cartn_x               -7.913 
_atom_site.Cartn_y               0.016 
_atom_site.Cartn_z               -15.694 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        14.61 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          CA 
_atom_site.auth_comp_id          CA 
_atom_site.auth_seq_id           67 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    1 
_model_server_stats.query_time_ms           631 
_model_server_stats.encode_time_ms          11 
_model_server_stats.element_count           1 
#