data_1P6D
#
_model_server_result.job_id            aRDCfTXpE_2J_ffw9DCOqA 
_model_server_result.datetime_utc      '2024-10-11 22:28:23' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1p6d 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":601}' 
#
_entry.id    1P6D 
#
_exptl.entry_id    1P6D 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              451.534 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (3S)-3,4-DI-N-HEXANOYLOXYBUTYL-1-PHOSPHOCHOLINE 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1P6D 
_cell.length_a            89.933 
_cell.length_b            89.933 
_cell.length_c            73.936 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1P6D 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        96 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 43 21 2' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             E 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A N TRP 1 A TRP 1 1_555 D ZN ZN . A ZN 248 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.279 ? 
metalc ? metalc2 A O TRP 1 A TRP 1 1_555 D ZN ZN . A ZN 248 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.259 ? 
metalc ? metalc3 A NE2 HIS 14 A HIS 14 1_555 D ZN ZN . A ZN 248 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2 ? 
metalc ? metalc4 A OD1 ASN 55 A ASN 55 1_555 B ZN ZN . A ZN 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.688 ? 
metalc ? metalc5 A ND1 HIS 69 A HIS 69 1_555 B ZN ZN . A ZN 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.095 ? 
metalc ? metalc6 A NE2 HIS 118 A HIS 118 1_555 B ZN ZN . A ZN 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.097 ? 
metalc ? metalc7 A OD2 ASP 122 A ASP 122 1_555 B ZN ZN . A ZN 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? 
metalc ? metalc8 A OD1 ASP 122 A ASP 122 1_555 D ZN ZN . A ZN 248 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.117 ? 
metalc ? metalc9 A NE2 HIS 128 A HIS 128 1_555 C ZN ZN . A ZN 247 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.995 ? 
metalc ? metalc10 A NE2 HIS 142 A HIS 142 1_555 C ZN ZN . A ZN 247 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? 
metalc ? metalc11 A OE2 GLU 146 A GLU 146 1_555 C ZN ZN . A ZN 247 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.19 ? 
metalc ? metalc12 A OE1 GLU 146 A GLU 146 1_555 C ZN ZN . A ZN 247 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.675 ? 
metalc ? metalc13 B ZN ZN . A ZN 246 1_555 E O3 3PC . A 3PC 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? 
metalc ? metalc14 C ZN ZN . A ZN 247 1_555 E O2 3PC . A 3PC 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.062 ? 
metalc ? metalc15 D ZN ZN . A ZN 248 1_555 E O3 3PC . A 3PC 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.147 ? 
#
_chem_comp.formula           'C21 H42 N O7 P' 
_chem_comp.formula_weight    451.534 
_chem_comp.id                3PC 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (3S)-3,4-DI-N-HEXANOYLOXYBUTYL-1-PHOSPHOCHOLINE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C15 C14 3PC sing 1 n n 
C15 H151 3PC sing 2 n n 
C15 H152 3PC sing 3 n n 
C15 H153 3PC sing 4 n n 
C14 C13 3PC sing 5 n n 
C14 H141 3PC sing 6 n n 
C14 H142 3PC sing 7 n n 
C13 C12 3PC sing 8 n n 
C13 H131 3PC sing 9 n n 
C13 H132 3PC sing 10 n n 
C12 C11 3PC sing 11 n n 
C12 H121 3PC sing 12 n n 
C12 H122 3PC sing 13 n n 
C11 C10 3PC sing 14 n n 
C11 H111 3PC sing 15 n n 
C11 H112 3PC sing 16 n n 
C10 O7 3PC doub 17 n n 
C10 O6 3PC sing 18 n n 
O6 C9 3PC sing 19 n n 
C9 C8 3PC sing 20 n n 
C9 H91 3PC sing 21 n n 
C9 H92 3PC sing 22 n n 
C8 O5 3PC sing 23 n n 
C8 C7 3PC sing 24 n n 
C8 H8 3PC sing 25 n n 
O5 C16 3PC sing 26 n n 
C16 O8 3PC doub 27 n n 
C16 C17 3PC sing 28 n n 
C17 C18 3PC sing 29 n n 
C17 H171 3PC sing 30 n n 
C17 H172 3PC sing 31 n n 
C18 C19 3PC sing 32 n n 
C18 H181 3PC sing 33 n n 
C18 H182 3PC sing 34 n n 
C19 C20 3PC sing 35 n n 
C19 H191 3PC sing 36 n n 
C19 H192 3PC sing 37 n n 
C20 C21 3PC sing 38 n n 
C20 H201 3PC sing 39 n n 
C20 H202 3PC sing 40 n n 
C21 H211 3PC sing 41 n n 
C21 H212 3PC sing 42 n n 
C21 H213 3PC sing 43 n n 
C7 C6 3PC sing 44 n n 
C7 H71 3PC sing 45 n n 
C7 H72 3PC sing 46 n n 
C6 P1 3PC sing 47 n n 
C6 H61 3PC sing 48 n n 
C6 H62 3PC sing 49 n n 
P1 O2 3PC sing 50 n n 
P1 O3 3PC doub 51 n n 
P1 O1 3PC sing 52 n n 
O1 C5 3PC sing 53 n n 
C5 C4 3PC sing 54 n n 
C5 H51 3PC sing 55 n n 
C5 H52 3PC sing 56 n n 
C4 N1 3PC sing 57 n n 
C4 H41 3PC sing 58 n n 
C4 H42 3PC sing 59 n n 
N1 C1 3PC sing 60 n n 
N1 C2 3PC sing 61 n n 
N1 C3 3PC sing 62 n n 
C1 H11 3PC sing 63 n n 
C1 H12 3PC sing 64 n n 
C1 H13 3PC sing 65 n n 
C2 H21 3PC sing 66 n n 
C2 H22 3PC sing 67 n n 
C2 H23 3PC sing 68 n n 
C3 H31 3PC sing 69 n n 
C3 H32 3PC sing 70 n n 
C3 H33 3PC sing 71 n n 
#
_atom_sites.entry_id                     1P6D 
_atom_sites.fract_transf_matrix[1][1]    0.011119 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011119 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.013525 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 ZN A 1 246 246 ZN ZN2 . 
C 2 ZN A 1 247 247 ZN ZN2 . 
D 2 ZN A 1 248 248 ZN ZN2 . 
E 3 3PC A 1 601 601 3PC HPC . 
F 4 HOH A 1 252 252 HOH HOH . 
F 4 HOH A 2 253 253 HOH HOH . 
F 4 HOH A 3 255 255 HOH HOH . 
F 4 HOH A 4 257 257 HOH HOH . 
F 4 HOH A 5 258 258 HOH HOH . 
F 4 HOH A 6 260 260 HOH HOH . 
F 4 HOH A 7 261 261 HOH HOH . 
F 4 HOH A 8 262 262 HOH HOH . 
F 4 HOH A 9 263 263 HOH HOH . 
F 4 HOH A 10 264 264 HOH HOH . 
F 4 HOH A 11 265 265 HOH HOH . 
F 4 HOH A 12 266 266 HOH HOH . 
F 4 HOH A 13 267 267 HOH HOH . 
F 4 HOH A 14 268 268 HOH HOH . 
F 4 HOH A 15 269 269 HOH HOH . 
F 4 HOH A 16 270 270 HOH HOH . 
F 4 HOH A 17 271 271 HOH HOH . 
F 4 HOH A 18 273 273 HOH HOH . 
F 4 HOH A 19 274 274 HOH HOH . 
F 4 HOH A 20 275 275 HOH HOH . 
F 4 HOH A 21 277 277 HOH HOH . 
F 4 HOH A 22 278 278 HOH HOH . 
F 4 HOH A 23 279 279 HOH HOH . 
F 4 HOH A 24 280 280 HOH HOH . 
F 4 HOH A 25 281 281 HOH HOH . 
F 4 HOH A 26 282 282 HOH HOH . 
F 4 HOH A 27 284 284 HOH HOH . 
F 4 HOH A 28 285 285 HOH HOH . 
F 4 HOH A 29 288 288 HOH HOH . 
F 4 HOH A 30 289 289 HOH HOH . 
F 4 HOH A 31 290 290 HOH HOH . 
F 4 HOH A 32 291 291 HOH HOH . 
F 4 HOH A 33 292 292 HOH HOH . 
F 4 HOH A 34 294 294 HOH HOH . 
F 4 HOH A 35 295 295 HOH HOH . 
F 4 HOH A 36 296 296 HOH HOH . 
F 4 HOH A 37 297 297 HOH HOH . 
F 4 HOH A 38 298 298 HOH HOH . 
F 4 HOH A 39 299 299 HOH HOH . 
F 4 HOH A 40 300 300 HOH HOH . 
F 4 HOH A 41 301 301 HOH HOH . 
F 4 HOH A 42 303 303 HOH HOH . 
F 4 HOH A 43 304 304 HOH HOH . 
F 4 HOH A 44 306 306 HOH HOH . 
F 4 HOH A 45 309 309 HOH HOH . 
F 4 HOH A 46 311 311 HOH HOH . 
F 4 HOH A 47 312 312 HOH HOH . 
F 4 HOH A 48 315 315 HOH HOH . 
F 4 HOH A 49 317 317 HOH HOH . 
F 4 HOH A 50 319 319 HOH HOH . 
F 4 HOH A 51 321 321 HOH HOH . 
F 4 HOH A 52 322 322 HOH HOH . 
F 4 HOH A 53 323 323 HOH HOH . 
F 4 HOH A 54 324 324 HOH HOH . 
F 4 HOH A 55 325 325 HOH HOH . 
F 4 HOH A 56 328 328 HOH HOH . 
F 4 HOH A 57 329 329 HOH HOH . 
F 4 HOH A 58 330 330 HOH HOH . 
F 4 HOH A 59 331 331 HOH HOH . 
F 4 HOH A 60 332 332 HOH HOH . 
F 4 HOH A 61 333 333 HOH HOH . 
F 4 HOH A 62 334 334 HOH HOH . 
F 4 HOH A 63 335 335 HOH HOH . 
F 4 HOH A 64 337 337 HOH HOH . 
F 4 HOH A 65 340 340 HOH HOH . 
F 4 HOH A 66 346 346 HOH HOH . 
F 4 HOH A 67 348 348 HOH HOH . 
F 4 HOH A 68 358 358 HOH HOH . 
F 4 HOH A 69 364 364 HOH HOH . 
F 4 HOH A 70 367 367 HOH HOH . 
F 4 HOH A 71 372 372 HOH HOH . 
F 4 HOH A 72 373 373 HOH HOH . 
F 4 HOH A 73 376 376 HOH HOH . 
F 4 HOH A 74 383 383 HOH HOH . 
F 4 HOH A 75 388 388 HOH HOH . 
F 4 HOH A 76 415 415 HOH HOH . 
F 4 HOH A 77 418 418 HOH HOH . 
F 4 HOH A 78 420 420 HOH HOH . 
F 4 HOH A 79 432 432 HOH HOH . 
F 4 HOH A 80 434 434 HOH HOH . 
F 4 HOH A 81 451 451 HOH HOH . 
F 4 HOH A 82 454 454 HOH HOH . 
F 4 HOH A 83 502 502 HOH HOH . 
F 4 HOH A 84 504 504 HOH HOH . 
F 4 HOH A 85 506 506 HOH HOH . 
F 4 HOH A 86 518 518 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C15 3PC . . . E 3 39.456 20.988 -6.223 1 46.82 ? C15 3PC 601 A 1 
HETATM 2 C C14 3PC . . . E 3 40.562 21.408 -5.226 1 48.67 ? C14 3PC 601 A 1 
HETATM 3 C C13 3PC . . . E 3 40.091 21.293 -3.78 1 49.77 ? C13 3PC 601 A 1 
HETATM 4 C C12 3PC . . . E 3 40.884 22.278 -2.919 1 52.04 ? C12 3PC 601 A 1 
HETATM 5 C C11 3PC . . . E 3 40.039 22.741 -1.715 1 54.28 ? C11 3PC 601 A 1 
HETATM 6 C C10 3PC . . . E 3 40.711 23.433 -0.504 1 58.17 ? C10 3PC 601 A 1 
HETATM 7 O O7 3PC . . . E 3 41.921 23.745 -0.547 1 57.45 ? O7 3PC 601 A 1 
HETATM 8 O O6 3PC . . . E 3 39.968 23.746 0.754 1 53.94 ? O6 3PC 601 A 1 
HETATM 9 C C9 3PC . . . E 3 40.477 24.421 1.961 1 49.76 ? C9 3PC 601 A 1 
HETATM 10 C C8 3PC . . . E 3 39.364 24.711 3 1 46.43 ? C8 3PC 601 A 1 
HETATM 11 O O5 3PC . . . E 3 38.113 24.998 2.35 1 46.53 ? O5 3PC 601 A 1 
HETATM 12 C C16 3PC . . . E 3 37.736 26.054 1.412 1 49.11 ? C16 3PC 601 A 1 
HETATM 13 O O8 3PC . . . E 3 38.535 26.979 1.149 1 44.12 ? O8 3PC 601 A 1 
HETATM 14 C C17 3PC . . . E 3 36.314 26.033 0.801 1 43.38 ? C17 3PC 601 A 1 
HETATM 15 C C18 3PC . . . E 3 36.211 26.158 -0.723 1 41.36 ? C18 3PC 601 A 1 
HETATM 16 C C19 3PC . . . E 3 36.637 24.862 -1.419 1 40.59 ? C19 3PC 601 A 1 
HETATM 17 C C20 3PC . . . E 3 36.953 25.16 -2.886 1 40.28 ? C20 3PC 601 A 1 
HETATM 18 C C21 3PC . . . E 3 36.787 23.915 -3.785 1 41.55 ? C21 3PC 601 A 1 
HETATM 19 C C7 3PC . . . E 3 39.104 23.508 3.863 1 42.71 ? C7 3PC 601 A 1 
HETATM 20 C C6 3PC . . . E 3 39.189 23.425 5.419 1 36.53 ? C6 3PC 601 A 1 
HETATM 21 P P1 3PC . . . E 3 40.839 23.08 6.004 1 32.58 ? P1 3PC 601 A 1 
HETATM 22 O O2 3PC . . . E 3 41.692 24.224 6.143 1 30.57 ? O2 3PC 601 A 1 
HETATM 23 O O3 3PC . . . E 3 40.987 22.196 7.244 1 28.62 ? O3 3PC 601 A 1 
HETATM 24 O O1 3PC . . . E 3 41.331 22.057 4.752 1 33.18 ? O1 3PC 601 A 1 
HETATM 25 C C5 3PC . . . E 3 42.667 21.946 4.151 1 37.32 ? C5 3PC 601 A 1 
HETATM 26 C C4 3PC . . . E 3 43 20.648 3.323 1 39.39 ? C4 3PC 601 A 1 
HETATM 27 N N1 3PC . . . E 3 42.133 19.884 2.264 1 40.89 ? N1 3PC 601 A 1 
HETATM 28 C C1 3PC . . . E 3 41.194 18.854 2.819 1 41.21 ? C1 3PC 601 A 1 
HETATM 29 C C2 3PC . . . E 3 41.246 20.682 1.383 1 41.5 ? C2 3PC 601 A 1 
HETATM 30 C C3 3PC . . . E 3 43.09 19.169 1.328 1 41.06 ? C3 3PC 601 A 1 
#
_model_server_stats.io_time_ms              6 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           334 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           30 
#