data_1P6E
#
_model_server_result.job_id            0jWpRCKimYAQLcp963Mx2Q 
_model_server_result.datetime_utc      '2024-10-11 22:27:37' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1p6e 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":601}' 
#
_entry.id    1P6E 
#
_exptl.entry_id    1P6E 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              457.585 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-DI-N-PENTANOYL-SN-GLYCERO-3-DITHIOPHOSPHOCHOLINE 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1P6E 
_cell.length_a            89.795 
_cell.length_b            89.795 
_cell.length_c            74.206 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1P6E 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        96 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 43 21 2' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             E 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A N TRP 1 A TRP 1 1_555 D ZN ZN . A ZN 248 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.326 ? 
metalc ? metalc2 A O TRP 1 A TRP 1 1_555 D ZN ZN . A ZN 248 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.302 ? 
metalc ? metalc3 A NE2 HIS 14 A HIS 14 1_555 D ZN ZN . A ZN 248 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.083 ? 
metalc ? metalc4 A OD1 ASN 55 A ASN 55 1_555 B ZN ZN . A ZN 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.894 ? 
metalc ? metalc5 A ND1 HIS 69 A HIS 69 1_555 B ZN ZN . A ZN 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.164 ? 
metalc ? metalc6 A NE2 HIS 118 A HIS 118 1_555 B ZN ZN . A ZN 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.2 ? 
metalc ? metalc7 A OD2 ASP 122 A ASP 122 1_555 B ZN ZN . A ZN 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.091 ? 
metalc ? metalc8 A OD1 ASP 122 A ASP 122 1_555 D ZN ZN . A ZN 248 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.152 ? 
metalc ? metalc9 A NE2 HIS 128 A HIS 128 1_555 C ZN ZN . A ZN 247 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.14 ? 
metalc ? metalc10 A NE2 HIS 142 A HIS 142 1_555 C ZN ZN . A ZN 247 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? 
metalc ? metalc11 A OE2 GLU 146 A GLU 146 1_555 C ZN ZN . A ZN 247 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.345 ? 
metalc ? metalc12 A OE1 GLU 146 A GLU 146 1_555 C ZN ZN . A ZN 247 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.704 ? 
metalc ? metalc13 B ZN ZN . A ZN 246 1_555 E S3 PC5 . A PC5 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.847 ? 
metalc ? metalc14 C ZN ZN . A ZN 247 1_555 E S2 PC5 . A PC5 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.969 ? 
metalc ? metalc15 D ZN ZN . A ZN 248 1_555 E S3 PC5 . A PC5 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.322 ? 
metalc ? metalc16 D ZN ZN . A ZN 248 1_555 E S2 PC5 . A PC5 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.815 ? 
#
_chem_comp.formula           'C18 H36 N O6 P S2' 
_chem_comp.formula_weight    457.585 
_chem_comp.id                PC5 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-DI-N-PENTANOYL-SN-GLYCERO-3-DITHIOPHOSPHOCHOLINE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C14 C13 PC5 sing 224 n n 
C14 H141 PC5 sing 225 n n 
C14 H142 PC5 sing 226 n n 
C14 H143 PC5 sing 227 n n 
C13 C12 PC5 sing 228 n n 
C13 H131 PC5 sing 229 n n 
C13 H132 PC5 sing 230 n n 
C12 C11 PC5 sing 231 n n 
C12 H121 PC5 sing 232 n n 
C12 H122 PC5 sing 233 n n 
C11 C10 PC5 sing 234 n n 
C11 H111 PC5 sing 235 n n 
C11 H112 PC5 sing 236 n n 
C10 O7 PC5 doub 237 n n 
C10 O6 PC5 sing 238 n n 
O6 C9 PC5 sing 239 n n 
C9 C8 PC5 sing 240 n n 
C9 H91 PC5 sing 241 n n 
C9 H92 PC5 sing 242 n n 
C8 O5 PC5 sing 243 n n 
C8 C7 PC5 sing 244 n n 
C8 H8 PC5 sing 245 n n 
O5 C15 PC5 sing 246 n n 
C15 O8 PC5 doub 247 n n 
C15 C16 PC5 sing 248 n n 
C16 C17 PC5 sing 249 n n 
C16 H161 PC5 sing 250 n n 
C16 H162 PC5 sing 251 n n 
C17 C18 PC5 sing 252 n n 
C17 H171 PC5 sing 253 n n 
C17 H172 PC5 sing 254 n n 
C18 C19 PC5 sing 255 n n 
C18 H181 PC5 sing 256 n n 
C18 H182 PC5 sing 257 n n 
C19 H191 PC5 sing 258 n n 
C19 H192 PC5 sing 259 n n 
C19 H193 PC5 sing 260 n n 
C7 O1 PC5 sing 261 n n 
C7 H71 PC5 sing 262 n n 
C7 H72 PC5 sing 263 n n 
O1 P1 PC5 sing 264 n n 
P1 S2 PC5 sing 265 n n 
P1 S3 PC5 doub 266 n n 
P1 O4 PC5 sing 267 n n 
O4 C5 PC5 sing 268 n n 
C5 C4 PC5 sing 269 n n 
C5 H51 PC5 sing 270 n n 
C5 H52 PC5 sing 271 n n 
C4 N1 PC5 sing 272 n n 
C4 H41 PC5 sing 273 n n 
C4 H42 PC5 sing 274 n n 
N1 C1 PC5 sing 275 n n 
N1 C2 PC5 sing 276 n n 
N1 C3 PC5 sing 277 n n 
C1 H11 PC5 sing 278 n n 
C1 H12 PC5 sing 279 n n 
C1 H13 PC5 sing 280 n n 
C2 H21 PC5 sing 281 n n 
C2 H22 PC5 sing 282 n n 
C2 H23 PC5 sing 283 n n 
C3 H31 PC5 sing 284 n n 
C3 H32 PC5 sing 285 n n 
C3 H33 PC5 sing 286 n n 
#
_atom_sites.entry_id                     1P6E 
_atom_sites.fract_transf_matrix[1][1]    0.011136 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011136 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.013476 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 ZN A 1 246 246 ZN ZN2 . 
C 2 ZN A 1 247 247 ZN ZN2 . 
D 2 ZN A 1 248 248 ZN ZN2 . 
E 3 PC5 A 1 601 601 PC5 PTP . 
F 4 HOH A 1 252 252 HOH HOH . 
F 4 HOH A 2 253 253 HOH HOH . 
F 4 HOH A 3 255 255 HOH HOH . 
F 4 HOH A 4 257 257 HOH HOH . 
F 4 HOH A 5 258 258 HOH HOH . 
F 4 HOH A 6 260 260 HOH HOH . 
F 4 HOH A 7 262 262 HOH HOH . 
F 4 HOH A 8 263 263 HOH HOH . 
F 4 HOH A 9 264 264 HOH HOH . 
F 4 HOH A 10 265 265 HOH HOH . 
F 4 HOH A 11 266 266 HOH HOH . 
F 4 HOH A 12 267 267 HOH HOH . 
F 4 HOH A 13 268 268 HOH HOH . 
F 4 HOH A 14 269 269 HOH HOH . 
F 4 HOH A 15 270 270 HOH HOH . 
F 4 HOH A 16 271 271 HOH HOH . 
F 4 HOH A 17 273 273 HOH HOH . 
F 4 HOH A 18 275 275 HOH HOH . 
F 4 HOH A 19 277 277 HOH HOH . 
F 4 HOH A 20 278 278 HOH HOH . 
F 4 HOH A 21 279 279 HOH HOH . 
F 4 HOH A 22 280 280 HOH HOH . 
F 4 HOH A 23 281 281 HOH HOH . 
F 4 HOH A 24 282 282 HOH HOH . 
F 4 HOH A 25 284 284 HOH HOH . 
F 4 HOH A 26 285 285 HOH HOH . 
F 4 HOH A 27 288 288 HOH HOH . 
F 4 HOH A 28 290 290 HOH HOH . 
F 4 HOH A 29 291 291 HOH HOH . 
F 4 HOH A 30 292 292 HOH HOH . 
F 4 HOH A 31 294 294 HOH HOH . 
F 4 HOH A 32 295 295 HOH HOH . 
F 4 HOH A 33 296 296 HOH HOH . 
F 4 HOH A 34 297 297 HOH HOH . 
F 4 HOH A 35 298 298 HOH HOH . 
F 4 HOH A 36 299 299 HOH HOH . 
F 4 HOH A 37 300 300 HOH HOH . 
F 4 HOH A 38 301 301 HOH HOH . 
F 4 HOH A 39 303 303 HOH HOH . 
F 4 HOH A 40 304 304 HOH HOH . 
F 4 HOH A 41 306 306 HOH HOH . 
F 4 HOH A 42 309 309 HOH HOH . 
F 4 HOH A 43 311 311 HOH HOH . 
F 4 HOH A 44 312 312 HOH HOH . 
F 4 HOH A 45 315 315 HOH HOH . 
F 4 HOH A 46 317 317 HOH HOH . 
F 4 HOH A 47 319 319 HOH HOH . 
F 4 HOH A 48 321 321 HOH HOH . 
F 4 HOH A 49 322 322 HOH HOH . 
F 4 HOH A 50 323 323 HOH HOH . 
F 4 HOH A 51 324 324 HOH HOH . 
F 4 HOH A 52 325 325 HOH HOH . 
F 4 HOH A 53 328 328 HOH HOH . 
F 4 HOH A 54 329 329 HOH HOH . 
F 4 HOH A 55 330 330 HOH HOH . 
F 4 HOH A 56 331 331 HOH HOH . 
F 4 HOH A 57 332 332 HOH HOH . 
F 4 HOH A 58 333 333 HOH HOH . 
F 4 HOH A 59 335 335 HOH HOH . 
F 4 HOH A 60 337 337 HOH HOH . 
F 4 HOH A 61 340 340 HOH HOH . 
F 4 HOH A 62 348 348 HOH HOH . 
F 4 HOH A 63 358 358 HOH HOH . 
F 4 HOH A 64 364 364 HOH HOH . 
F 4 HOH A 65 367 367 HOH HOH . 
F 4 HOH A 66 376 376 HOH HOH . 
F 4 HOH A 67 383 383 HOH HOH . 
F 4 HOH A 68 388 388 HOH HOH . 
F 4 HOH A 69 432 432 HOH HOH . 
F 4 HOH A 70 454 454 HOH HOH . 
F 4 HOH A 71 502 502 HOH HOH . 
F 4 HOH A 72 518 518 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C14 PC5 . . . E 3 41.513 21.34 -4.809 1 77.52 ? C14 PC5 601 A 1 
HETATM 2 C C13 PC5 . . . E 3 41.131 22.698 -4.146 1 79.6 ? C13 PC5 601 A 1 
HETATM 3 C C12 PC5 . . . E 3 40.562 22.552 -2.715 1 80.8 ? C12 PC5 601 A 1 
HETATM 4 C C11 PC5 . . . E 3 41.353 23.527 -1.828 1 82.67 ? C11 PC5 601 A 1 
HETATM 5 C C10 PC5 . . . E 3 41.045 23.692 -0.322 1 86.42 ? C10 PC5 601 A 1 
HETATM 6 O O7 PC5 . . . E 3 41.835 24.419 0.323 1 84.9 ? O7 PC5 601 A 1 
HETATM 7 O O6 PC5 . . . E 3 39.894 23.026 0.409 1 82.77 ? O6 PC5 601 A 1 
HETATM 8 C C9 PC5 . . . E 3 39.542 22.912 1.849 1 79.52 ? C9 PC5 601 A 1 
HETATM 9 C C8 PC5 . . . E 3 39.215 24.207 2.618 1 76.91 ? C8 PC5 601 A 1 
HETATM 10 O O5 PC5 . . . E 3 38.014 24.74 1.99 1 76.9 ? O5 PC5 601 A 1 
HETATM 11 C C15 PC5 . . . E 3 37.904 25.829 0.98 1 78.79 ? C15 PC5 601 A 1 
HETATM 12 O O8 PC5 . . . E 3 38.727 26.776 1.014 1 75.67 ? O8 PC5 601 A 1 
HETATM 13 C C16 PC5 . . . E 3 36.515 26.038 0.294 1 74.35 ? C16 PC5 601 A 1 
HETATM 14 C C17 PC5 . . . E 3 36.454 25.997 -1.246 1 71.68 ? C17 PC5 601 A 1 
HETATM 15 C C18 PC5 . . . E 3 36.744 24.575 -1.791 1 70.64 ? C18 PC5 601 A 1 
HETATM 16 C C19 PC5 . . . E 3 37.063 24.579 -3.308 1 69.67 ? C19 PC5 601 A 1 
HETATM 17 C C7 PC5 . . . E 3 39.026 24.242 4.178 1 75.28 ? C7 PC5 601 A 1 
HETATM 18 O O1 PC5 . . . E 3 39.448 23.155 5.069 1 69.86 ? O1 PC5 601 A 1 
HETATM 19 P P1 PC5 . . . E 3 40.91 22.95 5.83 1 23.42 ? P1 PC5 601 A 1 
HETATM 20 S S2 PC5 . . . E 3 41.992 24.375 6.102 1 67.16 ? S2 PC5 601 A 1 
HETATM 21 S S3 PC5 . . . E 3 40.756 21.903 7.46 1 61.32 ? S3 PC5 601 A 1 
HETATM 22 O O4 PC5 . . . E 3 41.475 21.936 4.634 1 64.56 ? O4 PC5 601 A 1 
HETATM 23 C C5 PC5 . . . E 3 42.779 21.937 3.929 1 63.89 ? C5 PC5 601 A 1 
HETATM 24 C C4 PC5 . . . E 3 43.203 20.588 3.24 1 62.51 ? C4 PC5 601 A 1 
HETATM 25 N N1 PC5 . . . E 3 42.416 19.837 2.087 1 62.59 ? N1 PC5 601 A 1 
HETATM 26 C C1 PC5 . . . E 3 43.123 18.548 1.716 1 62.12 ? C1 PC5 601 A 1 
HETATM 27 C C2 PC5 . . . E 3 40.995 19.393 2.445 1 61.44 ? C2 PC5 601 A 1 
HETATM 28 C C3 PC5 . . . E 3 42.461 20.587 0.759 1 62.11 ? C3 PC5 601 A 1 
#
_model_server_stats.io_time_ms              6 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           302 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           28 
#