data_1P6E # _model_server_result.job_id 7X7HxqUTDl7Q9U5aYe5Row _model_server_result.datetime_utc '2024-12-26 19:55:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1p6e # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":601}' # _entry.id 1P6E # _exptl.entry_id 1P6E _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 457.585 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-DI-N-PENTANOYL-SN-GLYCERO-3-DITHIOPHOSPHOCHOLINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1P6E _cell.length_a 89.795 _cell.length_b 89.795 _cell.length_c 74.206 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1P6E _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A N TRP 1 A TRP 1 1_555 D ZN ZN . A ZN 248 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.326 ? metalc ? metalc2 A O TRP 1 A TRP 1 1_555 D ZN ZN . A ZN 248 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.302 ? metalc ? metalc3 A NE2 HIS 14 A HIS 14 1_555 D ZN ZN . A ZN 248 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.083 ? metalc ? metalc4 A OD1 ASN 55 A ASN 55 1_555 B ZN ZN . A ZN 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.894 ? metalc ? metalc5 A ND1 HIS 69 A HIS 69 1_555 B ZN ZN . A ZN 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.164 ? metalc ? metalc6 A NE2 HIS 118 A HIS 118 1_555 B ZN ZN . A ZN 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.2 ? metalc ? metalc7 A OD2 ASP 122 A ASP 122 1_555 B ZN ZN . A ZN 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.091 ? metalc ? metalc8 A OD1 ASP 122 A ASP 122 1_555 D ZN ZN . A ZN 248 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.152 ? metalc ? metalc9 A NE2 HIS 128 A HIS 128 1_555 C ZN ZN . A ZN 247 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.14 ? metalc ? metalc10 A NE2 HIS 142 A HIS 142 1_555 C ZN ZN . A ZN 247 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? metalc ? metalc11 A OE2 GLU 146 A GLU 146 1_555 C ZN ZN . A ZN 247 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.345 ? metalc ? metalc12 A OE1 GLU 146 A GLU 146 1_555 C ZN ZN . A ZN 247 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.704 ? metalc ? metalc13 B ZN ZN . A ZN 246 1_555 E S3 PC5 . A PC5 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.847 ? metalc ? metalc14 C ZN ZN . A ZN 247 1_555 E S2 PC5 . A PC5 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.969 ? metalc ? metalc15 D ZN ZN . A ZN 248 1_555 E S3 PC5 . A PC5 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.322 ? metalc ? metalc16 D ZN ZN . A ZN 248 1_555 E S2 PC5 . A PC5 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.815 ? # _chem_comp.formula 'C18 H36 N O6 P S2' _chem_comp.formula_weight 457.585 _chem_comp.id PC5 _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-DI-N-PENTANOYL-SN-GLYCERO-3-DITHIOPHOSPHOCHOLINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C14 C13 PC5 sing 224 n n C14 H141 PC5 sing 225 n n C14 H142 PC5 sing 226 n n C14 H143 PC5 sing 227 n n C13 C12 PC5 sing 228 n n C13 H131 PC5 sing 229 n n C13 H132 PC5 sing 230 n n C12 C11 PC5 sing 231 n n C12 H121 PC5 sing 232 n n C12 H122 PC5 sing 233 n n C11 C10 PC5 sing 234 n n C11 H111 PC5 sing 235 n n C11 H112 PC5 sing 236 n n C10 O7 PC5 doub 237 n n C10 O6 PC5 sing 238 n n O6 C9 PC5 sing 239 n n C9 C8 PC5 sing 240 n n C9 H91 PC5 sing 241 n n C9 H92 PC5 sing 242 n n C8 O5 PC5 sing 243 n n C8 C7 PC5 sing 244 n n C8 H8 PC5 sing 245 n n O5 C15 PC5 sing 246 n n C15 O8 PC5 doub 247 n n C15 C16 PC5 sing 248 n n C16 C17 PC5 sing 249 n n C16 H161 PC5 sing 250 n n C16 H162 PC5 sing 251 n n C17 C18 PC5 sing 252 n n C17 H171 PC5 sing 253 n n C17 H172 PC5 sing 254 n n C18 C19 PC5 sing 255 n n C18 H181 PC5 sing 256 n n C18 H182 PC5 sing 257 n n C19 H191 PC5 sing 258 n n C19 H192 PC5 sing 259 n n C19 H193 PC5 sing 260 n n C7 O1 PC5 sing 261 n n C7 H71 PC5 sing 262 n n C7 H72 PC5 sing 263 n n O1 P1 PC5 sing 264 n n P1 S2 PC5 sing 265 n n P1 S3 PC5 doub 266 n n P1 O4 PC5 sing 267 n n O4 C5 PC5 sing 268 n n C5 C4 PC5 sing 269 n n C5 H51 PC5 sing 270 n n C5 H52 PC5 sing 271 n n C4 N1 PC5 sing 272 n n C4 H41 PC5 sing 273 n n C4 H42 PC5 sing 274 n n N1 C1 PC5 sing 275 n n N1 C2 PC5 sing 276 n n N1 C3 PC5 sing 277 n n C1 H11 PC5 sing 278 n n C1 H12 PC5 sing 279 n n C1 H13 PC5 sing 280 n n C2 H21 PC5 sing 281 n n C2 H22 PC5 sing 282 n n C2 H23 PC5 sing 283 n n C3 H31 PC5 sing 284 n n C3 H32 PC5 sing 285 n n C3 H33 PC5 sing 286 n n # _atom_sites.entry_id 1P6E _atom_sites.fract_transf_matrix[1][1] 0.011136 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011136 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013476 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 246 246 ZN ZN2 . C 2 ZN A 1 247 247 ZN ZN2 . D 2 ZN A 1 248 248 ZN ZN2 . E 3 PC5 A 1 601 601 PC5 PTP . F 4 HOH A 1 252 252 HOH HOH . F 4 HOH A 2 253 253 HOH HOH . F 4 HOH A 3 255 255 HOH HOH . F 4 HOH A 4 257 257 HOH HOH . F 4 HOH A 5 258 258 HOH HOH . F 4 HOH A 6 260 260 HOH HOH . F 4 HOH A 7 262 262 HOH HOH . F 4 HOH A 8 263 263 HOH HOH . F 4 HOH A 9 264 264 HOH HOH . F 4 HOH A 10 265 265 HOH HOH . F 4 HOH A 11 266 266 HOH HOH . F 4 HOH A 12 267 267 HOH HOH . F 4 HOH A 13 268 268 HOH HOH . F 4 HOH A 14 269 269 HOH HOH . F 4 HOH A 15 270 270 HOH HOH . F 4 HOH A 16 271 271 HOH HOH . F 4 HOH A 17 273 273 HOH HOH . F 4 HOH A 18 275 275 HOH HOH . F 4 HOH A 19 277 277 HOH HOH . F 4 HOH A 20 278 278 HOH HOH . F 4 HOH A 21 279 279 HOH HOH . F 4 HOH A 22 280 280 HOH HOH . F 4 HOH A 23 281 281 HOH HOH . F 4 HOH A 24 282 282 HOH HOH . F 4 HOH A 25 284 284 HOH HOH . F 4 HOH A 26 285 285 HOH HOH . F 4 HOH A 27 288 288 HOH HOH . F 4 HOH A 28 290 290 HOH HOH . F 4 HOH A 29 291 291 HOH HOH . F 4 HOH A 30 292 292 HOH HOH . F 4 HOH A 31 294 294 HOH HOH . F 4 HOH A 32 295 295 HOH HOH . F 4 HOH A 33 296 296 HOH HOH . F 4 HOH A 34 297 297 HOH HOH . F 4 HOH A 35 298 298 HOH HOH . F 4 HOH A 36 299 299 HOH HOH . F 4 HOH A 37 300 300 HOH HOH . F 4 HOH A 38 301 301 HOH HOH . F 4 HOH A 39 303 303 HOH HOH . F 4 HOH A 40 304 304 HOH HOH . F 4 HOH A 41 306 306 HOH HOH . F 4 HOH A 42 309 309 HOH HOH . F 4 HOH A 43 311 311 HOH HOH . F 4 HOH A 44 312 312 HOH HOH . F 4 HOH A 45 315 315 HOH HOH . F 4 HOH A 46 317 317 HOH HOH . F 4 HOH A 47 319 319 HOH HOH . F 4 HOH A 48 321 321 HOH HOH . F 4 HOH A 49 322 322 HOH HOH . F 4 HOH A 50 323 323 HOH HOH . F 4 HOH A 51 324 324 HOH HOH . F 4 HOH A 52 325 325 HOH HOH . F 4 HOH A 53 328 328 HOH HOH . F 4 HOH A 54 329 329 HOH HOH . F 4 HOH A 55 330 330 HOH HOH . F 4 HOH A 56 331 331 HOH HOH . F 4 HOH A 57 332 332 HOH HOH . F 4 HOH A 58 333 333 HOH HOH . F 4 HOH A 59 335 335 HOH HOH . F 4 HOH A 60 337 337 HOH HOH . F 4 HOH A 61 340 340 HOH HOH . F 4 HOH A 62 348 348 HOH HOH . F 4 HOH A 63 358 358 HOH HOH . F 4 HOH A 64 364 364 HOH HOH . F 4 HOH A 65 367 367 HOH HOH . F 4 HOH A 66 376 376 HOH HOH . F 4 HOH A 67 383 383 HOH HOH . F 4 HOH A 68 388 388 HOH HOH . F 4 HOH A 69 432 432 HOH HOH . F 4 HOH A 70 454 454 HOH HOH . F 4 HOH A 71 502 502 HOH HOH . F 4 HOH A 72 518 518 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C14 PC5 . . . E 3 41.513 21.34 -4.809 1 77.52 ? C14 PC5 601 A 1 HETATM 2 C C13 PC5 . . . E 3 41.131 22.698 -4.146 1 79.6 ? C13 PC5 601 A 1 HETATM 3 C C12 PC5 . . . E 3 40.562 22.552 -2.715 1 80.8 ? C12 PC5 601 A 1 HETATM 4 C C11 PC5 . . . E 3 41.353 23.527 -1.828 1 82.67 ? C11 PC5 601 A 1 HETATM 5 C C10 PC5 . . . E 3 41.045 23.692 -0.322 1 86.42 ? C10 PC5 601 A 1 HETATM 6 O O7 PC5 . . . E 3 41.835 24.419 0.323 1 84.9 ? O7 PC5 601 A 1 HETATM 7 O O6 PC5 . . . E 3 39.894 23.026 0.409 1 82.77 ? O6 PC5 601 A 1 HETATM 8 C C9 PC5 . . . E 3 39.542 22.912 1.849 1 79.52 ? C9 PC5 601 A 1 HETATM 9 C C8 PC5 . . . E 3 39.215 24.207 2.618 1 76.91 ? C8 PC5 601 A 1 HETATM 10 O O5 PC5 . . . E 3 38.014 24.74 1.99 1 76.9 ? O5 PC5 601 A 1 HETATM 11 C C15 PC5 . . . E 3 37.904 25.829 0.98 1 78.79 ? C15 PC5 601 A 1 HETATM 12 O O8 PC5 . . . E 3 38.727 26.776 1.014 1 75.67 ? O8 PC5 601 A 1 HETATM 13 C C16 PC5 . . . E 3 36.515 26.038 0.294 1 74.35 ? C16 PC5 601 A 1 HETATM 14 C C17 PC5 . . . E 3 36.454 25.997 -1.246 1 71.68 ? C17 PC5 601 A 1 HETATM 15 C C18 PC5 . . . E 3 36.744 24.575 -1.791 1 70.64 ? C18 PC5 601 A 1 HETATM 16 C C19 PC5 . . . E 3 37.063 24.579 -3.308 1 69.67 ? C19 PC5 601 A 1 HETATM 17 C C7 PC5 . . . E 3 39.026 24.242 4.178 1 75.28 ? C7 PC5 601 A 1 HETATM 18 O O1 PC5 . . . E 3 39.448 23.155 5.069 1 69.86 ? O1 PC5 601 A 1 HETATM 19 P P1 PC5 . . . E 3 40.91 22.95 5.83 1 23.42 ? P1 PC5 601 A 1 HETATM 20 S S2 PC5 . . . E 3 41.992 24.375 6.102 1 67.16 ? S2 PC5 601 A 1 HETATM 21 S S3 PC5 . . . E 3 40.756 21.903 7.46 1 61.32 ? S3 PC5 601 A 1 HETATM 22 O O4 PC5 . . . E 3 41.475 21.936 4.634 1 64.56 ? O4 PC5 601 A 1 HETATM 23 C C5 PC5 . . . E 3 42.779 21.937 3.929 1 63.89 ? C5 PC5 601 A 1 HETATM 24 C C4 PC5 . . . E 3 43.203 20.588 3.24 1 62.51 ? C4 PC5 601 A 1 HETATM 25 N N1 PC5 . . . E 3 42.416 19.837 2.087 1 62.59 ? N1 PC5 601 A 1 HETATM 26 C C1 PC5 . . . E 3 43.123 18.548 1.716 1 62.12 ? C1 PC5 601 A 1 HETATM 27 C C2 PC5 . . . E 3 40.995 19.393 2.445 1 61.44 ? C2 PC5 601 A 1 HETATM 28 C C3 PC5 . . . E 3 42.461 20.587 0.759 1 62.11 ? C3 PC5 601 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 317 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 28 #