data_1P7R # _model_server_result.job_id 5gSAcS43pYo92rCA0K3TQA _model_server_result.datetime_utc '2024-11-25 23:14:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1p7r # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":440}' # _entry.id 1P7R # _exptl.entry_id 1P7R _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 162.232 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (S)-3-(1-METHYLPYRROLIDIN-2-YL)PYRIDINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1P7R _cell.length_a 63.455 _cell.length_b 63.455 _cell.length_c 248.759 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1P7R _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id metalc _struct_conn.details ? _struct_conn.id metalc1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 357 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 357 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id FE _struct_conn.ptnr2_label_comp_id HEM _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id HEM _struct_conn.ptnr2_auth_seq_id 430 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.357 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C10 H14 N2' _chem_comp.formula_weight 162.232 _chem_comp.id NCT _chem_comp.mon_nstd_flag . _chem_comp.name (S)-3-(1-METHYLPYRROLIDIN-2-YL)PYRIDINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '(S)-(-)-NICOTINE;3-[(2S)-1-METHYL-2-PYRROLIDINYL] PYRIDINE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C1 NCT doub 319 n y N1 C5 NCT sing 320 n y C1 C2 NCT sing 321 n y C1 HC1 NCT sing 322 n n C2 C3 NCT doub 323 n y C2 C6 NCT sing 324 n n C3 C4 NCT sing 325 n y C3 HC3 NCT sing 326 n n C4 C5 NCT doub 327 n y C4 HC4 NCT sing 328 n n C5 HC5 NCT sing 329 n n N2 C6 NCT sing 330 n n N2 C9 NCT sing 331 n n N2 C10 NCT sing 332 n n C6 C7 NCT sing 333 n n C6 HC6 NCT sing 334 n n C7 C8 NCT sing 335 n n C7 HC71 NCT sing 336 n n C7 HC72 NCT sing 337 n n C8 C9 NCT sing 338 n n C8 HC81 NCT sing 339 n n C8 HC82 NCT sing 340 n n C9 HC91 NCT sing 341 n n C9 HC92 NCT sing 342 n n C10 H101 NCT sing 343 n n C10 H102 NCT sing 344 n n C10 H103 NCT sing 345 n n # _atom_sites.entry_id 1P7R _atom_sites.fract_transf_matrix[1][1] 0.015758 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015758 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00402 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEM A 1 430 430 HEM HEM . C 3 NCT A 1 440 440 NCT NCT . D 4 HOH A 1 441 1 HOH HOH . D 4 HOH A 2 442 2 HOH HOH . D 4 HOH A 3 443 3 HOH HOH . D 4 HOH A 4 444 4 HOH HOH . D 4 HOH A 5 445 5 HOH HOH . D 4 HOH A 6 446 6 HOH HOH . D 4 HOH A 7 447 7 HOH HOH . D 4 HOH A 8 448 8 HOH HOH . D 4 HOH A 9 449 9 HOH HOH . D 4 HOH A 10 450 10 HOH HOH . D 4 HOH A 11 451 11 HOH HOH . D 4 HOH A 12 452 12 HOH HOH . D 4 HOH A 13 453 13 HOH HOH . D 4 HOH A 14 454 14 HOH HOH . D 4 HOH A 15 455 15 HOH HOH . D 4 HOH A 16 456 16 HOH HOH . D 4 HOH A 17 457 17 HOH HOH . D 4 HOH A 18 458 18 HOH HOH . D 4 HOH A 19 459 19 HOH HOH . D 4 HOH A 20 460 20 HOH HOH . D 4 HOH A 21 461 21 HOH HOH . D 4 HOH A 22 462 22 HOH HOH . D 4 HOH A 23 463 23 HOH HOH . D 4 HOH A 24 464 24 HOH HOH . D 4 HOH A 25 465 25 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 NCT . . . C 3 19.933 15.055 39.837 1 17.29 ? N1 NCT 440 A 1 HETATM 2 C C1 NCT . . . C 3 18.851 14.474 40.378 1 15.12 ? C1 NCT 440 A 1 HETATM 3 C C2 NCT . . . C 3 18.894 13.721 41.547 1 12.84 ? C2 NCT 440 A 1 HETATM 4 C C3 NCT . . . C 3 20.141 13.574 42.154 1 15.1 ? C3 NCT 440 A 1 HETATM 5 C C4 NCT . . . C 3 21.267 14.167 41.599 1 15.17 ? C4 NCT 440 A 1 HETATM 6 C C5 NCT . . . C 3 21.122 14.894 40.425 1 16.49 ? C5 NCT 440 A 1 HETATM 7 N N2 NCT . . . C 3 16.417 13.711 41.971 1 6.7 ? N2 NCT 440 A 1 HETATM 8 C C6 NCT . . . C 3 17.667 12.961 42.041 1 9.43 ? C6 NCT 440 A 1 HETATM 9 C C7 NCT . . . C 3 17.359 11.734 41.154 1 7.9 ? C7 NCT 440 A 1 HETATM 10 C C8 NCT . . . C 3 15.846 11.482 41.341 1 9.72 ? C8 NCT 440 A 1 HETATM 11 C C9 NCT . . . C 3 15.324 12.75 42.072 1 6.63 ? C9 NCT 440 A 1 HETATM 12 C C10 NCT . . . C 3 16.318 14.821 42.886 1 8.36 ? C10 NCT 440 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 286 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 12 #