data_1P8D # _model_server_result.job_id wXdmcQXbwQWrJO1m-rGq5Q _model_server_result.datetime_utc '2025-03-06 09:14:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1p8d # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":109}' # _entry.id 1P8D # _exptl.entry_id 1P8D _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 400.637 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '17-[3-(3,3-DIMETHYL-OXIRANYL)-1-METHYL-PROPYL]-10,13-DIMETHYL-2,3,4,7,8,9,10,11,12,13,14,15,16,17-TETRADECAHYDRO-1H-CYC LOPENTA[A]PHENANTHREN-3-OL' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1P8D _cell.length_a 71.166 _cell.length_b 120.012 _cell.length_c 147.56 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1P8D _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 2 2 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 PISA tetrameric 4 software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E,G,I 1 1 B,D,F,H,J 2 1 A,B,C,D,E,F,G,H,I,J 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N # _chem_comp.formula 'C27 H44 O2' _chem_comp.formula_weight 400.637 _chem_comp.id CO1 _chem_comp.mon_nstd_flag . _chem_comp.name '17-[3-(3,3-DIMETHYL-OXIRANYL)-1-METHYL-PROPYL]-10,13-DIMETHYL-2,3,4,7,8,9,10,11,12,13,14,15,16,17-TETRADECAHYDRO-1H-CYC LOPENTA[A]PHENANTHREN-3-OL' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 24,25(S)-EPOXYCHOLESTEROL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O24 C22 CO1 sing 70 n n O24 H24 CO1 sing 71 n n C22 C18 CO1 sing 72 n n C22 C19 CO1 sing 73 n n C22 H22 CO1 sing 74 n n C18 C14 CO1 sing 75 n n C18 H181 CO1 sing 76 n n C18 H182 CO1 sing 77 n n C14 C9 CO1 doub 78 n n C14 C7 CO1 sing 79 n n C9 C4 CO1 sing 80 n n C9 H9 CO1 sing 81 n n C4 C1 CO1 sing 82 n n C4 H41 CO1 sing 83 n n C4 H42 CO1 sing 84 n n C1 C3 CO1 sing 85 n n C1 C2 CO1 sing 86 n n C1 H1 CO1 sing 87 n n C3 C8 CO1 sing 88 n n C3 C7 CO1 sing 89 n n C3 H3 CO1 sing 90 n n C8 C11 CO1 sing 91 n n C8 H81 CO1 sing 92 n n C8 H82 CO1 sing 93 n n C11 C5 CO1 sing 94 n n C11 H111 CO1 sing 95 n n C11 H112 CO1 sing 96 n n C5 C12 CO1 sing 97 n n C5 C10 CO1 sing 98 n n C5 C2 CO1 sing 99 n n C12 H121 CO1 sing 100 n n C12 H122 CO1 sing 101 n n C12 H123 CO1 sing 102 n n C10 C13 CO1 sing 103 n n C10 C17 CO1 sing 104 n n C10 H10 CO1 sing 105 n n C13 C6 CO1 sing 106 n n C13 H131 CO1 sing 107 n n C13 H132 CO1 sing 108 n n C6 C2 CO1 sing 109 n n C6 H61 CO1 sing 110 n n C6 H62 CO1 sing 111 n n C2 H2 CO1 sing 112 n n C17 C21 CO1 sing 113 n n C17 C20 CO1 sing 114 n n C17 H17 CO1 sing 115 n n C21 H211 CO1 sing 116 n n C21 H212 CO1 sing 117 n n C21 H213 CO1 sing 118 n n C20 C23 CO1 sing 119 n n C20 H201 CO1 sing 120 n n C20 H202 CO1 sing 121 n n C23 C25 CO1 sing 122 n n C23 H231 CO1 sing 123 n n C23 H232 CO1 sing 124 n n C25 O27 CO1 sing 125 n n C25 C26 CO1 sing 126 n n C25 H25 CO1 sing 127 n n O27 C26 CO1 sing 128 n n C26 C28 CO1 sing 129 n n C26 C29 CO1 sing 130 n n C28 H281 CO1 sing 131 n n C28 H282 CO1 sing 132 n n C28 H283 CO1 sing 133 n n C29 H291 CO1 sing 134 n n C29 H292 CO1 sing 135 n n C29 H293 CO1 sing 136 n n C7 C16 CO1 sing 137 n n C7 C15 CO1 sing 138 n n C16 H161 CO1 sing 139 n n C16 H162 CO1 sing 140 n n C16 H163 CO1 sing 141 n n C15 C19 CO1 sing 142 n n C15 H151 CO1 sing 143 n n C15 H152 CO1 sing 144 n n C19 H191 CO1 sing 145 n n C19 H192 CO1 sing 146 n n # _atom_sites.entry_id 1P8D _atom_sites.fract_transf_matrix[1][1] 0.014052 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008333 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006777 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 CO1 A 1 108 1 CO1 MON . F 3 CO1 B 1 109 1 CO1 MON . G 4 HOH A 1 2 2 HOH HOH . G 4 HOH A 2 3 3 HOH HOH . G 4 HOH A 3 5 5 HOH HOH . G 4 HOH A 4 6 6 HOH HOH . G 4 HOH A 5 14 14 HOH HOH . G 4 HOH A 6 15 15 HOH HOH . G 4 HOH A 7 17 17 HOH HOH . G 4 HOH A 8 19 19 HOH HOH . G 4 HOH A 9 21 21 HOH HOH . G 4 HOH A 10 22 22 HOH HOH . G 4 HOH A 11 23 23 HOH HOH . G 4 HOH A 12 29 29 HOH HOH . G 4 HOH A 13 30 30 HOH HOH . G 4 HOH A 14 32 32 HOH HOH . G 4 HOH A 15 37 37 HOH HOH . G 4 HOH A 16 39 39 HOH HOH . G 4 HOH A 17 40 40 HOH HOH . G 4 HOH A 18 41 41 HOH HOH . G 4 HOH A 19 44 44 HOH HOH . G 4 HOH A 20 46 46 HOH HOH . G 4 HOH A 21 48 48 HOH HOH . G 4 HOH A 22 49 49 HOH HOH . G 4 HOH A 23 50 50 HOH HOH . G 4 HOH A 24 51 51 HOH HOH . G 4 HOH A 25 53 53 HOH HOH . G 4 HOH A 26 55 55 HOH HOH . G 4 HOH A 27 56 56 HOH HOH . G 4 HOH A 28 61 61 HOH HOH . G 4 HOH A 29 62 62 HOH HOH . G 4 HOH A 30 65 65 HOH HOH . G 4 HOH A 31 67 67 HOH HOH . G 4 HOH A 32 72 72 HOH HOH . G 4 HOH A 33 73 73 HOH HOH . G 4 HOH A 34 74 74 HOH HOH . G 4 HOH A 35 76 76 HOH HOH . G 4 HOH A 36 77 77 HOH HOH . G 4 HOH A 37 80 80 HOH HOH . G 4 HOH A 38 82 82 HOH HOH . G 4 HOH A 39 83 83 HOH HOH . G 4 HOH A 40 86 86 HOH HOH . G 4 HOH A 41 90 90 HOH HOH . G 4 HOH A 42 92 92 HOH HOH . G 4 HOH A 43 94 94 HOH HOH . G 4 HOH A 44 96 96 HOH HOH . G 4 HOH A 45 97 97 HOH HOH . G 4 HOH A 46 98 98 HOH HOH . G 4 HOH A 47 99 99 HOH HOH . G 4 HOH A 48 102 102 HOH HOH . G 4 HOH A 49 104 104 HOH HOH . G 4 HOH A 50 106 106 HOH HOH . G 4 HOH A 51 107 107 HOH HOH . H 4 HOH B 1 1 1 HOH HOH . H 4 HOH B 2 4 4 HOH HOH . H 4 HOH B 3 7 7 HOH HOH . H 4 HOH B 4 8 8 HOH HOH . H 4 HOH B 5 9 9 HOH HOH . H 4 HOH B 6 10 10 HOH HOH . H 4 HOH B 7 11 11 HOH HOH . H 4 HOH B 8 12 12 HOH HOH . H 4 HOH B 9 13 13 HOH HOH . H 4 HOH B 10 16 16 HOH HOH . H 4 HOH B 11 18 18 HOH HOH . H 4 HOH B 12 20 20 HOH HOH . H 4 HOH B 13 24 24 HOH HOH . H 4 HOH B 14 25 25 HOH HOH . H 4 HOH B 15 26 26 HOH HOH . H 4 HOH B 16 27 27 HOH HOH . H 4 HOH B 17 28 28 HOH HOH . H 4 HOH B 18 31 31 HOH HOH . H 4 HOH B 19 33 33 HOH HOH . H 4 HOH B 20 34 34 HOH HOH . H 4 HOH B 21 35 35 HOH HOH . H 4 HOH B 22 38 38 HOH HOH . H 4 HOH B 23 42 42 HOH HOH . H 4 HOH B 24 43 43 HOH HOH . H 4 HOH B 25 45 45 HOH HOH . H 4 HOH B 26 47 47 HOH HOH . H 4 HOH B 27 54 54 HOH HOH . H 4 HOH B 28 57 57 HOH HOH . H 4 HOH B 29 58 58 HOH HOH . H 4 HOH B 30 59 59 HOH HOH . H 4 HOH B 31 66 66 HOH HOH . H 4 HOH B 32 68 68 HOH HOH . H 4 HOH B 33 69 69 HOH HOH . H 4 HOH B 34 71 71 HOH HOH . H 4 HOH B 35 75 75 HOH HOH . H 4 HOH B 36 79 79 HOH HOH . H 4 HOH B 37 85 85 HOH HOH . H 4 HOH B 38 87 87 HOH HOH . H 4 HOH B 39 88 88 HOH HOH . H 4 HOH B 40 89 89 HOH HOH . H 4 HOH B 41 93 93 HOH HOH . H 4 HOH B 42 100 100 HOH HOH . H 4 HOH B 43 101 101 HOH HOH . H 4 HOH B 44 103 103 HOH HOH . I 4 HOH C 1 52 52 HOH HOH . I 4 HOH C 2 60 60 HOH HOH . I 4 HOH C 3 105 105 HOH HOH . J 4 HOH D 1 63 63 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O24 CO1 . . . F 3 27.578 -24.735 89.689 1 63.74 ? O24 CO1 109 B 1 HETATM 2 C C22 CO1 . . . F 3 28.966 -24.962 89.557 1 27.3 ? C22 CO1 109 B 1 HETATM 3 C C18 CO1 . . . F 3 29.275 -26.42 90.069 1 27.57 ? C18 CO1 109 B 1 HETATM 4 C C14 CO1 . . . F 3 30.631 -26.664 90.815 1 19.56 ? C14 CO1 109 B 1 HETATM 5 C C9 CO1 . . . F 3 31.142 -27.922 90.764 1 27.05 ? C9 CO1 109 B 1 HETATM 6 C C4 CO1 . . . F 3 32.492 -28.336 91.388 1 25.2 ? C4 CO1 109 B 1 HETATM 7 C C1 CO1 . . . F 3 33.28 -27.293 92.263 1 26.58 ? C1 CO1 109 B 1 HETATM 8 C C3 CO1 . . . F 3 32.987 -25.812 91.717 1 27.93 ? C3 CO1 109 B 1 HETATM 9 C C8 CO1 . . . F 3 33.812 -24.727 92.535 1 27.32 ? C8 CO1 109 B 1 HETATM 10 C C11 CO1 . . . F 3 35.336 -25.105 92.659 1 25.31 ? C11 CO1 109 B 1 HETATM 11 C C5 CO1 . . . F 3 35.608 -26.537 93.26 1 26.65 ? C5 CO1 109 B 1 HETATM 12 C C12 CO1 . . . F 3 35.082 -26.524 94.756 1 24.57 ? C12 CO1 109 B 1 HETATM 13 C C10 CO1 . . . F 3 37.077 -27.087 93.098 1 20.1 ? C10 CO1 109 B 1 HETATM 14 C C13 CO1 . . . F 3 36.863 -28.612 93.305 1 21.68 ? C13 CO1 109 B 1 HETATM 15 C C6 CO1 . . . F 3 35.437 -28.932 92.758 1 26.87 ? C6 CO1 109 B 1 HETATM 16 C C2 CO1 . . . F 3 34.866 -27.55 92.295 1 28.3 ? C2 CO1 109 B 1 HETATM 17 C C17 CO1 . . . F 3 38.239 -26.434 94.018 1 21.81 ? C17 CO1 109 B 1 HETATM 18 C C21 CO1 . . . F 3 38.163 -24.864 94.196 1 11.01 ? C21 CO1 109 B 1 HETATM 19 C C20 CO1 . . . F 3 39.728 -26.781 93.65 1 20.27 ? C20 CO1 109 B 1 HETATM 20 C C23 CO1 . . . F 3 40.161 -26.699 92.174 1 16.94 ? C23 CO1 109 B 1 HETATM 21 C C25 CO1 . . . F 3 41.669 -27.01 92.012 1 13.85 ? C25 CO1 109 B 1 HETATM 22 O O27 CO1 . . . F 3 42.295 -27.335 90.804 1 27.5 ? O27 CO1 109 B 1 HETATM 23 C C26 CO1 . . . F 3 42.18 -28.409 91.826 1 21.78 ? C26 CO1 109 B 1 HETATM 24 C C28 CO1 . . . F 3 41.155 -29.554 91.664 1 18.1 ? C28 CO1 109 B 1 HETATM 25 C C29 CO1 . . . F 3 43.525 -28.727 92.465 1 29.46 ? C29 CO1 109 B 1 HETATM 26 C C7 CO1 . . . F 3 31.402 -25.48 91.57 1 24.1 ? C7 CO1 109 B 1 HETATM 27 C C16 CO1 . . . F 3 30.792 -25.251 93.014 1 14.45 ? C16 CO1 109 B 1 HETATM 28 C C15 CO1 . . . F 3 31.201 -24.198 90.666 1 22.1 ? C15 CO1 109 B 1 HETATM 29 C C19 CO1 . . . F 3 29.735 -23.83 90.315 1 30.55 ? C19 CO1 109 B 1 # _model_server_stats.io_time_ms 47 _model_server_stats.parse_time_ms 100 _model_server_stats.create_model_time_ms 130 _model_server_stats.query_time_ms 333 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 29 #