data_1P8F # _model_server_result.job_id 80ahS3gXXgJMt82HWHa1uQ _model_server_result.datetime_utc '2024-11-24 09:57:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1p8f # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":601}' # _entry.id 1P8F # _exptl.entry_id 1P8F _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 192.124 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ISOCITRIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1P8F _cell.length_a 103.306 _cell.length_b 103.306 _cell.length_c 150.004 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1P8F _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD2 ASP 283 A ASP 283 7_555 C MG MG . A MG 420 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.169 ? metalc ? metalc2 A OD1 ASP 307 A ASP 307 1_555 C MG MG . A MG 420 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.013 ? metalc ? metalc3 C MG MG . A MG 420 1_555 D O7 ICT . A ICT 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.106 ? metalc ? metalc4 C MG MG . A MG 420 1_555 D O2 ICT . A ICT 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.198 ? metalc ? metalc5 C MG MG . A MG 420 1_555 H O HOH . A HOH 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.134 ? metalc ? metalc6 C MG MG . A MG 420 1_555 H O HOH . A HOH 803 7_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.072 ? # _chem_comp.formula 'C6 H8 O7' _chem_comp.formula_weight 192.124 _chem_comp.id ICT _chem_comp.mon_nstd_flag . _chem_comp.name 'ISOCITRIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 ICT doub 165 n n C1 O2 ICT sing 166 n n C1 C2 ICT sing 167 n n O2 HO2 ICT sing 168 n n C2 O7 ICT sing 169 n n C2 C3 ICT sing 170 n n C2 H2 ICT sing 171 n n O7 HO7 ICT sing 172 n n C3 C4 ICT sing 173 n n C3 C6 ICT sing 174 n n C3 H3 ICT sing 175 n n C4 C5 ICT sing 176 n n C4 H41 ICT sing 177 n n C4 H42 ICT sing 178 n n C5 O3 ICT doub 179 n n C5 O4 ICT sing 180 n n O4 HO4 ICT sing 181 n n C6 O5 ICT doub 182 n n C6 O6 ICT sing 183 n n O6 HO6 ICT sing 184 n n # _atom_sites.entry_id 1P8F _atom_sites.fract_transf_matrix[1][1] 0.00968 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00968 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006666 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 801 801 SO4 SO4 . C 3 MG A 1 420 1 MG MG . D 4 ICT A 1 601 601 ICT ISO . E 5 GOL A 1 703 703 GOL GOL . F 5 GOL A 1 704 704 GOL GOL . G 5 GOL A 1 706 706 GOL GOL . H 6 HOH A 1 802 2 HOH WAT . H 6 HOH A 2 803 3 HOH WAT . H 6 HOH A 3 804 4 HOH WAT . H 6 HOH A 4 805 5 HOH WAT . H 6 HOH A 5 806 6 HOH WAT . H 6 HOH A 6 807 7 HOH WAT . H 6 HOH A 7 808 8 HOH WAT . H 6 HOH A 8 809 9 HOH WAT . H 6 HOH A 9 810 10 HOH WAT . H 6 HOH A 10 811 11 HOH WAT . H 6 HOH A 11 812 12 HOH WAT . H 6 HOH A 12 813 13 HOH WAT . H 6 HOH A 13 814 14 HOH WAT . H 6 HOH A 14 815 15 HOH WAT . H 6 HOH A 15 816 16 HOH WAT . H 6 HOH A 16 817 17 HOH WAT . H 6 HOH A 17 818 18 HOH WAT . H 6 HOH A 18 819 19 HOH WAT . H 6 HOH A 19 820 20 HOH WAT . H 6 HOH A 20 821 21 HOH WAT . H 6 HOH A 21 822 22 HOH WAT . H 6 HOH A 22 823 23 HOH WAT . H 6 HOH A 23 824 24 HOH WAT . H 6 HOH A 24 825 25 HOH WAT . H 6 HOH A 25 826 26 HOH WAT . H 6 HOH A 26 827 27 HOH WAT . H 6 HOH A 27 828 28 HOH WAT . H 6 HOH A 28 829 29 HOH WAT . H 6 HOH A 29 830 30 HOH WAT . H 6 HOH A 30 831 31 HOH WAT . H 6 HOH A 31 832 32 HOH WAT . H 6 HOH A 32 833 33 HOH WAT . H 6 HOH A 33 834 34 HOH WAT . H 6 HOH A 34 835 35 HOH WAT . H 6 HOH A 35 836 36 HOH WAT . H 6 HOH A 36 837 37 HOH WAT . H 6 HOH A 37 838 38 HOH WAT . H 6 HOH A 38 839 39 HOH WAT . H 6 HOH A 39 840 40 HOH WAT . H 6 HOH A 40 841 41 HOH WAT . H 6 HOH A 41 842 42 HOH WAT . H 6 HOH A 42 843 43 HOH WAT . H 6 HOH A 43 844 44 HOH WAT . H 6 HOH A 44 845 45 HOH WAT . H 6 HOH A 45 846 46 HOH WAT . H 6 HOH A 46 847 47 HOH WAT . H 6 HOH A 47 848 48 HOH WAT . H 6 HOH A 48 849 49 HOH WAT . H 6 HOH A 49 850 50 HOH WAT . H 6 HOH A 50 851 51 HOH WAT . H 6 HOH A 51 852 52 HOH WAT . H 6 HOH A 52 853 53 HOH WAT . H 6 HOH A 53 854 54 HOH WAT . H 6 HOH A 54 855 55 HOH WAT . H 6 HOH A 55 856 56 HOH WAT . H 6 HOH A 56 857 57 HOH WAT . H 6 HOH A 57 858 58 HOH WAT . H 6 HOH A 58 859 59 HOH WAT . H 6 HOH A 59 860 60 HOH WAT . H 6 HOH A 60 861 61 HOH WAT . H 6 HOH A 61 862 62 HOH WAT . H 6 HOH A 62 863 63 HOH WAT . H 6 HOH A 63 864 64 HOH WAT . H 6 HOH A 64 865 65 HOH WAT . H 6 HOH A 65 866 66 HOH WAT . H 6 HOH A 66 867 67 HOH WAT . H 6 HOH A 67 868 68 HOH WAT . H 6 HOH A 68 869 69 HOH WAT . H 6 HOH A 69 870 70 HOH WAT . H 6 HOH A 70 871 71 HOH WAT . H 6 HOH A 71 872 72 HOH WAT . H 6 HOH A 72 873 73 HOH WAT . H 6 HOH A 73 874 74 HOH WAT . H 6 HOH A 74 875 75 HOH WAT . H 6 HOH A 75 876 76 HOH WAT . H 6 HOH A 76 877 77 HOH WAT . H 6 HOH A 77 878 78 HOH WAT . H 6 HOH A 78 879 79 HOH WAT . H 6 HOH A 79 880 80 HOH WAT . H 6 HOH A 80 881 81 HOH WAT . H 6 HOH A 81 882 82 HOH WAT . H 6 HOH A 82 883 83 HOH WAT . H 6 HOH A 83 884 84 HOH WAT . H 6 HOH A 84 885 85 HOH WAT . H 6 HOH A 85 886 86 HOH WAT . H 6 HOH A 86 887 87 HOH WAT . H 6 HOH A 87 888 88 HOH WAT . H 6 HOH A 88 889 89 HOH WAT . H 6 HOH A 89 890 90 HOH WAT . H 6 HOH A 90 891 91 HOH WAT . H 6 HOH A 91 892 92 HOH WAT . H 6 HOH A 92 893 93 HOH WAT . H 6 HOH A 93 894 94 HOH WAT . H 6 HOH A 94 895 95 HOH WAT . H 6 HOH A 95 896 96 HOH WAT . H 6 HOH A 96 897 97 HOH WAT . H 6 HOH A 97 898 98 HOH WAT . H 6 HOH A 98 899 99 HOH WAT . H 6 HOH A 99 900 100 HOH WAT . H 6 HOH A 100 901 101 HOH WAT . H 6 HOH A 101 902 102 HOH WAT . H 6 HOH A 102 903 103 HOH WAT . H 6 HOH A 103 904 104 HOH WAT . H 6 HOH A 104 905 105 HOH WAT . H 6 HOH A 105 906 106 HOH WAT . H 6 HOH A 106 907 107 HOH WAT . H 6 HOH A 107 908 108 HOH WAT . H 6 HOH A 108 909 109 HOH WAT . H 6 HOH A 109 910 110 HOH WAT . H 6 HOH A 110 911 111 HOH WAT . H 6 HOH A 111 912 112 HOH WAT . H 6 HOH A 112 913 113 HOH WAT . H 6 HOH A 113 914 114 HOH WAT . H 6 HOH A 114 915 115 HOH WAT . H 6 HOH A 115 916 116 HOH WAT . H 6 HOH A 116 917 117 HOH WAT . H 6 HOH A 117 918 118 HOH WAT . H 6 HOH A 118 919 119 HOH WAT . H 6 HOH A 119 920 120 HOH WAT . H 6 HOH A 120 921 121 HOH WAT . H 6 HOH A 121 922 122 HOH WAT . H 6 HOH A 122 923 123 HOH WAT . H 6 HOH A 123 924 124 HOH WAT . H 6 HOH A 124 925 125 HOH WAT . H 6 HOH A 125 926 126 HOH WAT . H 6 HOH A 126 927 127 HOH WAT . H 6 HOH A 127 928 128 HOH WAT . H 6 HOH A 128 929 129 HOH WAT . H 6 HOH A 129 930 130 HOH WAT . H 6 HOH A 130 931 131 HOH WAT . H 6 HOH A 131 932 132 HOH WAT . H 6 HOH A 132 933 133 HOH WAT . H 6 HOH A 133 934 134 HOH WAT . H 6 HOH A 134 935 135 HOH WAT . H 6 HOH A 135 936 136 HOH WAT . H 6 HOH A 136 937 137 HOH WAT . H 6 HOH A 137 938 138 HOH WAT . H 6 HOH A 138 939 139 HOH WAT . H 6 HOH A 139 940 140 HOH WAT . H 6 HOH A 140 941 141 HOH WAT . H 6 HOH A 141 942 142 HOH WAT . H 6 HOH A 142 943 143 HOH WAT . H 6 HOH A 143 944 144 HOH WAT . H 6 HOH A 144 945 145 HOH WAT . H 6 HOH A 145 946 146 HOH WAT . H 6 HOH A 146 947 147 HOH WAT . H 6 HOH A 147 948 148 HOH WAT . H 6 HOH A 148 949 149 HOH WAT . H 6 HOH A 149 950 150 HOH WAT . H 6 HOH A 150 951 151 HOH WAT . H 6 HOH A 151 952 152 HOH WAT . H 6 HOH A 152 953 153 HOH WAT . H 6 HOH A 153 954 154 HOH WAT . H 6 HOH A 154 955 155 HOH WAT . H 6 HOH A 155 956 156 HOH WAT . H 6 HOH A 156 957 157 HOH WAT . H 6 HOH A 157 958 158 HOH WAT . H 6 HOH A 158 959 159 HOH WAT . H 6 HOH A 159 960 160 HOH WAT . H 6 HOH A 160 961 161 HOH WAT . H 6 HOH A 161 962 162 HOH WAT . H 6 HOH A 162 963 163 HOH WAT . H 6 HOH A 163 964 164 HOH WAT . H 6 HOH A 164 965 165 HOH WAT . H 6 HOH A 165 966 166 HOH WAT . H 6 HOH A 166 967 167 HOH WAT . H 6 HOH A 167 968 168 HOH WAT . H 6 HOH A 168 969 169 HOH WAT . H 6 HOH A 169 970 170 HOH WAT . H 6 HOH A 170 971 171 HOH WAT . H 6 HOH A 171 972 172 HOH WAT . H 6 HOH A 172 973 173 HOH WAT . H 6 HOH A 173 974 174 HOH WAT . H 6 HOH A 174 975 175 HOH WAT . H 6 HOH A 175 976 176 HOH WAT . H 6 HOH A 176 977 177 HOH WAT . H 6 HOH A 177 978 178 HOH WAT . H 6 HOH A 178 979 179 HOH WAT . H 6 HOH A 179 980 180 HOH WAT . H 6 HOH A 180 981 181 HOH WAT . H 6 HOH A 181 982 182 HOH WAT . H 6 HOH A 182 983 183 HOH WAT . H 6 HOH A 183 984 184 HOH WAT . H 6 HOH A 184 985 185 HOH WAT . H 6 HOH A 185 986 186 HOH WAT . H 6 HOH A 186 987 187 HOH WAT . H 6 HOH A 187 988 188 HOH WAT . H 6 HOH A 188 989 189 HOH WAT . H 6 HOH A 189 990 190 HOH WAT . H 6 HOH A 190 991 191 HOH WAT . H 6 HOH A 191 992 192 HOH WAT . H 6 HOH A 192 993 193 HOH WAT . H 6 HOH A 193 994 194 HOH WAT . H 6 HOH A 194 995 195 HOH WAT . H 6 HOH A 195 996 196 HOH WAT . H 6 HOH A 196 997 197 HOH WAT . H 6 HOH A 197 998 198 HOH WAT . H 6 HOH A 198 999 199 HOH WAT . H 6 HOH A 199 1000 200 HOH WAT . H 6 HOH A 200 1001 201 HOH WAT . H 6 HOH A 201 1002 202 HOH WAT . H 6 HOH A 202 1003 203 HOH WAT . H 6 HOH A 203 1004 204 HOH WAT . H 6 HOH A 204 1005 205 HOH WAT . H 6 HOH A 205 1006 206 HOH WAT . H 6 HOH A 206 1007 207 HOH WAT . H 6 HOH A 207 1008 208 HOH WAT . H 6 HOH A 208 1009 209 HOH WAT . H 6 HOH A 209 1010 210 HOH WAT . H 6 HOH A 210 1011 211 HOH WAT . H 6 HOH A 211 1012 212 HOH WAT . H 6 HOH A 212 1013 213 HOH WAT . H 6 HOH A 213 1014 214 HOH WAT . H 6 HOH A 214 1015 215 HOH WAT . H 6 HOH A 215 1016 216 HOH WAT . H 6 HOH A 216 1017 217 HOH WAT . H 6 HOH A 217 1018 218 HOH WAT . H 6 HOH A 218 1019 219 HOH WAT . H 6 HOH A 219 1020 220 HOH WAT . H 6 HOH A 220 1021 221 HOH WAT . H 6 HOH A 221 1022 222 HOH WAT . H 6 HOH A 222 1023 223 HOH WAT . H 6 HOH A 223 1024 224 HOH WAT . H 6 HOH A 224 1025 225 HOH WAT . H 6 HOH A 225 1026 226 HOH WAT . H 6 HOH A 226 1027 227 HOH WAT . H 6 HOH A 227 1028 228 HOH WAT . H 6 HOH A 228 1029 229 HOH WAT . H 6 HOH A 229 1030 230 HOH WAT . H 6 HOH A 230 1031 231 HOH WAT . H 6 HOH A 231 1032 232 HOH WAT . H 6 HOH A 232 1033 233 HOH WAT . H 6 HOH A 233 1034 234 HOH WAT . H 6 HOH A 234 1035 235 HOH WAT . H 6 HOH A 235 1036 236 HOH WAT . H 6 HOH A 236 1037 237 HOH WAT . H 6 HOH A 237 1038 238 HOH WAT . H 6 HOH A 238 1039 239 HOH WAT . H 6 HOH A 239 1040 240 HOH WAT . H 6 HOH A 240 1041 241 HOH WAT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 ICT . . . D 4 -65.89 -83.856 -3.189 1 21.07 ? C1 ICT 601 A 1 HETATM 2 O O1 ICT . . . D 4 -65.16 -84.403 -4.036 1 22.79 ? O1 ICT 601 A 1 HETATM 3 O O2 ICT . . . D 4 -67.042 -83.497 -3.419 1 18.36 ? O2 ICT 601 A 1 HETATM 4 C C2 ICT . . . D 4 -65.333 -83.593 -1.768 1 17.72 ? C2 ICT 601 A 1 HETATM 5 O O7 ICT . . . D 4 -66.377 -83.072 -0.914 1 17.16 ? O7 ICT 601 A 1 HETATM 6 C C3 ICT . . . D 4 -64.193 -82.619 -1.848 1 19.37 ? C3 ICT 601 A 1 HETATM 7 C C4 ICT . . . D 4 -63.475 -82.542 -0.503 1 24.15 ? C4 ICT 601 A 1 HETATM 8 C C5 ICT . . . D 4 -62.562 -83.734 -0.271 1 29.1 ? C5 ICT 601 A 1 HETATM 9 O O3 ICT . . . D 4 -61.379 -83.696 -0.639 1 29.63 ? O3 ICT 601 A 1 HETATM 10 O O4 ICT . . . D 4 -63.012 -84.745 0.301 1 33.25 ? O4 ICT 601 A 1 HETATM 11 C C6 ICT . . . D 4 -64.766 -81.234 -2.263 1 21.23 ? C6 ICT 601 A 1 HETATM 12 O O5 ICT . . . D 4 -64.974 -81.092 -3.482 1 21.56 ? O5 ICT 601 A 1 HETATM 13 O O6 ICT . . . D 4 -65.012 -80.364 -1.363 1 19.96 ? O6 ICT 601 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 293 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 13 #