data_1P8H # _model_server_result.job_id C0yuyMrTIHlmwLAAGORXOQ _model_server_result.datetime_utc '2024-12-20 02:06:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1p8h # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"P","auth_seq_id":701}' # _entry.id 1P8H # _exptl.entry_id 1P8H _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 380.734 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2,10,23-TRIMETHYL-TETRACOSANE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1P8H _cell.length_a 60.907 _cell.length_b 60.907 _cell.length_c 108.574 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1P8H _symmetry.cell_setting ? _symmetry.Int_Tables_number 173 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 63' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_665 -y+1,x-y+1,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 30.4535 52.747009 0 3 'crystal symmetry operation' 3_565 -x+y,-x+1,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 -30.4535 52.747009 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id P _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id NZ _struct_conn.ptnr1_label_comp_id LYS _struct_conn.ptnr1_label_seq_id 216 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id LYS _struct_conn.ptnr1_auth_seq_id 216 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id C15 _struct_conn.ptnr2_label_comp_id RET _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id RET _struct_conn.ptnr2_auth_seq_id 301 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.342 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C27 H56' _chem_comp.formula_weight 380.734 _chem_comp.id SQU _chem_comp.mon_nstd_flag . _chem_comp.name 2,10,23-TRIMETHYL-TETRACOSANE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'LIPID FRAGMENT' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 SQU sing 435 n n C1 H11 SQU sing 436 n n C1 H12A SQU sing 437 n n C1 H13 SQU sing 438 n n C2 C3 SQU sing 439 n n C2 C4 SQU sing 440 n n C2 H2 SQU sing 441 n n C3 H31 SQU sing 442 n n C3 H32 SQU sing 443 n n C3 H33 SQU sing 444 n n C4 C5 SQU sing 445 n n C4 H41 SQU sing 446 n n C4 H42 SQU sing 447 n n C5 C6 SQU sing 448 n n C5 H51 SQU sing 449 n n C5 H52 SQU sing 450 n n C6 C7 SQU sing 451 n n C6 H61 SQU sing 452 n n C6 H62 SQU sing 453 n n C7 C9 SQU sing 454 n n C7 H71 SQU sing 455 n n C7 H72 SQU sing 456 n n C9 C10 SQU sing 457 n n C9 H91 SQU sing 458 n n C9 H92 SQU sing 459 n n C10 C11 SQU sing 460 n n C10 H101 SQU sing 461 n n C10 H102 SQU sing 462 n n C11 C12 SQU sing 463 n n C11 H111 SQU sing 464 n n C11 H112 SQU sing 465 n n C12 C13 SQU sing 466 n n C12 C14 SQU sing 467 n n C12 H12 SQU sing 468 n n C13 H131 SQU sing 469 n n C13 H132 SQU sing 470 n n C13 H133 SQU sing 471 n n C14 C15 SQU sing 472 n n C14 H141 SQU sing 473 n n C14 H142 SQU sing 474 n n C15 C16 SQU sing 475 n n C15 H151 SQU sing 476 n n C15 H152 SQU sing 477 n n C16 C17 SQU sing 478 n n C16 H161 SQU sing 479 n n C16 H162 SQU sing 480 n n C17 C18 SQU sing 481 n n C17 H171 SQU sing 482 n n C17 H172 SQU sing 483 n n C18 C20 SQU sing 484 n n C18 H181 SQU sing 485 n n C18 H182 SQU sing 486 n n C20 C21 SQU sing 487 n n C20 H201 SQU sing 488 n n C20 H202 SQU sing 489 n n C21 C22 SQU sing 490 n n C21 H211 SQU sing 491 n n C21 H212 SQU sing 492 n n C22 C23 SQU sing 493 n n C22 H221 SQU sing 494 n n C22 H222 SQU sing 495 n n C23 C25 SQU sing 496 n n C23 H231 SQU sing 497 n n C23 H232 SQU sing 498 n n C25 C26 SQU sing 499 n n C25 H251 SQU sing 500 n n C25 H252 SQU sing 501 n n C26 C27 SQU sing 502 n n C26 H261 SQU sing 503 n n C26 H262 SQU sing 504 n n C27 C28 SQU sing 505 n n C27 H271 SQU sing 506 n n C27 H272 SQU sing 507 n n C28 C29 SQU sing 508 n n C28 C30 SQU sing 509 n n C28 H28 SQU sing 510 n n C29 H291 SQU sing 511 n n C29 H292 SQU sing 512 n n C29 H293 SQU sing 513 n n C30 H301 SQU sing 514 n n C30 H302 SQU sing 515 n n C30 H303 SQU sing 516 n n # _atom_sites.entry_id 1P8H _atom_sites.fract_transf_matrix[1][1] 0.016418 _atom_sites.fract_transf_matrix[1][2] 0.009479 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018958 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00921 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 RET A 1 301 301 RET RET . C 3 LI1 A 1 601 601 LI1 LI1 . D 3 LI1 A 1 602 602 LI1 LI1 . E 3 LI1 A 1 603 603 LI1 LI1 . F 3 LI1 A 1 604 604 LI1 LI1 . G 3 LI1 A 1 605 605 LI1 LI1 . H 3 LI1 A 1 606 606 LI1 LI1 . I 3 LI1 A 1 607 607 LI1 LI1 . J 3 LI1 A 1 608 608 LI1 LI1 . K 3 LI1 A 1 609 609 LI1 LI1 . L 3 LI1 A 1 610 610 LI1 LI1 . M 3 LI1 A 1 611 611 LI1 LI1 . N 3 LI1 A 1 612 612 LI1 LI1 . O 3 LI1 A 1 613 613 LI1 LI1 . P 4 SQU A 1 701 701 SQU SQU . Q 5 HOH A 1 401 401 HOH HOH . Q 5 HOH A 2 402 402 HOH HOH . Q 5 HOH A 3 403 403 HOH HOH . Q 5 HOH A 4 404 404 HOH HOH . Q 5 HOH A 5 405 405 HOH HOH . Q 5 HOH A 6 406 406 HOH HOH . Q 5 HOH A 7 407 407 HOH HOH . Q 5 HOH A 8 411 411 HOH HOH . Q 5 HOH A 9 412 412 HOH HOH . Q 5 HOH A 10 413 413 HOH HOH . Q 5 HOH A 11 414 414 HOH HOH . Q 5 HOH A 12 415 415 HOH HOH . Q 5 HOH A 13 416 416 HOH HOH . Q 5 HOH A 14 417 417 HOH HOH . Q 5 HOH A 15 418 418 HOH HOH . Q 5 HOH A 16 419 419 HOH HOH . Q 5 HOH A 17 420 420 HOH HOH . Q 5 HOH A 18 501 501 HOH HOH . Q 5 HOH A 19 502 502 HOH HOH . Q 5 HOH A 20 503 503 HOH HOH . Q 5 HOH A 21 504 504 HOH HOH . Q 5 HOH A 22 511 511 HOH HOH . Q 5 HOH A 23 512 512 HOH HOH . Q 5 HOH A 24 513 513 HOH HOH . Q 5 HOH A 25 514 514 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 SQU . . . P 4 31.418 27.844 7.057 0.42 79.68 ? C1 SQU 701 A 1 HETATM 2 C C2 SQU . . . P 4 31.819 28.539 5.756 0.42 104.45 ? C2 SQU 701 A 1 HETATM 3 C C3 SQU . . . P 4 31.979 27.611 4.531 0.42 110.74 ? C3 SQU 701 A 1 HETATM 4 C C4 SQU . . . P 4 32.491 29.721 5.742 0.42 106.17 ? C4 SQU 701 A 1 HETATM 5 C C5 SQU . . . P 4 32.686 30.689 4.568 0.42 107.41 ? C5 SQU 701 A 1 HETATM 6 C C6 SQU . . . P 4 31.435 30.955 3.695 0.42 108.29 ? C6 SQU 701 A 1 HETATM 7 C C7 SQU . . . P 4 30.935 32.408 3.683 0.42 103.99 ? C7 SQU 701 A 1 HETATM 8 C C9 SQU . . . P 4 29.787 32.869 4.226 0.42 93.33 ? C9 SQU 701 A 1 HETATM 9 C C10 SQU . . . P 4 29.552 33.929 5.295 0.42 82.31 ? C10 SQU 701 A 1 HETATM 10 C C11 SQU . . . P 4 29.609 33.41 6.748 0.42 79.91 ? C11 SQU 701 A 1 HETATM 11 C C12 SQU . . . P 4 29.445 34.446 7.864 0.42 75.59 ? C12 SQU 701 A 1 HETATM 12 C C13 SQU . . . P 4 30.244 35.739 7.755 0.42 86.45 ? C13 SQU 701 A 1 HETATM 13 C C14 SQU . . . P 4 29.073 34.128 9.122 0.42 73.88 ? C14 SQU 701 A 1 HETATM 14 C C15 SQU . . . P 4 28.583 32.794 9.652 0.42 70.38 ? C15 SQU 701 A 1 HETATM 15 C C16 SQU . . . P 4 29.62 31.663 9.733 0.42 69.04 ? C16 SQU 701 A 1 HETATM 16 C C17 SQU . . . P 4 29.332 30.489 8.802 0.42 70.23 ? C17 SQU 701 A 1 HETATM 17 C C18 SQU . . . P 4 29.275 29.185 9.131 0.42 67.61 ? C18 SQU 701 A 1 HETATM 18 C C20 SQU . . . P 4 28.039 28.29 9.045 0.42 68.6 ? C20 SQU 701 A 1 HETATM 19 C C21 SQU . . . P 4 27.923 27.606 7.658 0.42 64.6 ? C21 SQU 701 A 1 HETATM 20 C C22 SQU . . . P 4 26.959 26.433 7.656 0.42 58.23 ? C22 SQU 701 A 1 HETATM 21 C C23 SQU . . . P 4 27.038 25.316 8.389 0.42 60.48 ? C23 SQU 701 A 1 HETATM 22 C C25 SQU . . . P 4 27.344 25.18 9.884 0.42 57.71 ? C25 SQU 701 A 1 HETATM 23 C C26 SQU . . . P 4 28.85 25.332 10.225 0.42 53.3 ? C26 SQU 701 A 1 HETATM 24 C C27 SQU . . . P 4 29.132 25.988 11.57 0.42 48.85 ? C27 SQU 701 A 1 HETATM 25 C C28 SQU . . . P 4 29.414 25.405 12.761 0.42 48.43 ? C28 SQU 701 A 1 HETATM 26 C C29 SQU . . . P 4 29.404 26.312 13.985 0.42 44.19 ? C29 SQU 701 A 1 HETATM 27 C C30 SQU . . . P 4 28.954 23.98 13.082 0.42 66.78 ? C30 SQU 701 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 966 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 27 #