data_1P8N # _model_server_result.job_id lh2-fdVDab8ruTwufxSpBQ _model_server_result.datetime_utc '2025-01-08 17:37:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1p8n # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":1000}' # _entry.id 1P8N # _exptl.entry_id 1P8N _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1P8N _cell.length_a 90.337 _cell.length_b 90.337 _cell.length_c 104.985 _cell.Z_PDB 9 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1P8N _symmetry.cell_setting ? _symmetry.Int_Tables_number 145 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 32' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A ND1 HIS 96 A HIS 101 1_555 D MN MN . A MN 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.105 ? metalc ? metalc2 A OD1 ASP 119 A ASP 124 1_555 D MN MN . A MN 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.005 ? metalc ? metalc3 A OD1 ASP 123 A ASP 128 1_555 D MN MN . A MN 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.121 ? metalc ? metalc4 D MN MN . A MN 500 1_555 H O HOH . A HOH 823 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.448 ? metalc ? metalc5 B ND1 HIS 96 B HIS 101 1_555 F MN MN . B MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.165 ? metalc ? metalc6 B OD1 ASP 119 B ASP 124 1_555 F MN MN . B MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.004 ? metalc ? metalc7 B OD1 ASP 123 B ASP 128 1_555 F MN MN . B MN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.08 ? metalc ? metalc8 F MN MN . B MN 501 1_555 I O HOH . B HOH 851 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.355 ? metalc ? metalc9 C ND1 HIS 96 C HIS 101 1_555 G MN MN . C MN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.158 ? metalc ? metalc10 C OD1 ASP 119 C ASP 124 1_555 G MN MN . C MN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? metalc ? metalc11 C OD1 ASP 123 C ASP 128 1_555 G MN MN . C MN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.083 ? metalc ? metalc12 G MN MN . C MN 502 1_555 J O HOH . C HOH 824 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.439 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 1P8N _atom_sites.fract_transf_matrix[1][1] 0.01107 _atom_sites.fract_transf_matrix[1][2] 0.006391 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012782 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009525 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 MN A 1 500 500 MN MN . E 3 GOL A 1 1000 1000 GOL GOL . F 2 MN B 1 501 501 MN MN . G 2 MN C 1 502 502 MN MN . H 4 HOH A 1 805 805 HOH WAT . H 4 HOH A 2 807 807 HOH WAT . H 4 HOH A 3 808 808 HOH WAT . H 4 HOH A 4 809 809 HOH WAT . H 4 HOH A 5 811 811 HOH WAT . H 4 HOH A 6 816 816 HOH WAT . H 4 HOH A 7 817 817 HOH WAT . H 4 HOH A 8 821 821 HOH WAT . H 4 HOH A 9 823 823 HOH WAT . H 4 HOH A 10 825 825 HOH WAT . H 4 HOH A 11 829 829 HOH WAT . H 4 HOH A 12 832 832 HOH WAT . H 4 HOH A 13 833 833 HOH WAT . H 4 HOH A 14 834 834 HOH WAT . H 4 HOH A 15 841 841 HOH WAT . H 4 HOH A 16 845 845 HOH WAT . H 4 HOH A 17 846 846 HOH WAT . H 4 HOH A 18 849 849 HOH WAT . I 4 HOH B 1 800 800 HOH WAT . I 4 HOH B 2 801 801 HOH WAT . I 4 HOH B 3 804 804 HOH WAT . I 4 HOH B 4 806 806 HOH WAT . I 4 HOH B 5 810 810 HOH WAT . I 4 HOH B 6 812 812 HOH WAT . I 4 HOH B 7 813 813 HOH WAT . I 4 HOH B 8 818 818 HOH WAT . I 4 HOH B 9 819 819 HOH WAT . I 4 HOH B 10 822 822 HOH WAT . I 4 HOH B 11 826 826 HOH WAT . I 4 HOH B 12 830 830 HOH WAT . I 4 HOH B 13 835 835 HOH WAT . I 4 HOH B 14 836 836 HOH WAT . I 4 HOH B 15 839 839 HOH WAT . I 4 HOH B 16 840 840 HOH WAT . I 4 HOH B 17 842 842 HOH WAT . I 4 HOH B 18 848 848 HOH WAT . I 4 HOH B 19 851 851 HOH WAT . J 4 HOH C 1 802 802 HOH WAT . J 4 HOH C 2 803 803 HOH WAT . J 4 HOH C 3 814 814 HOH WAT . J 4 HOH C 4 815 815 HOH WAT . J 4 HOH C 5 820 820 HOH WAT . J 4 HOH C 6 824 824 HOH WAT . J 4 HOH C 7 827 827 HOH WAT . J 4 HOH C 8 828 828 HOH WAT . J 4 HOH C 9 831 831 HOH WAT . J 4 HOH C 10 837 837 HOH WAT . J 4 HOH C 11 838 838 HOH WAT . J 4 HOH C 12 843 843 HOH WAT . J 4 HOH C 13 844 844 HOH WAT . J 4 HOH C 14 847 847 HOH WAT . J 4 HOH C 15 850 850 HOH WAT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . E 3 39.943 26.507 4.372 1 69.72 ? C1 GOL 1000 A 1 HETATM 2 O O1 GOL . . . E 3 40.628 25.287 4.029 1 62.98 ? O1 GOL 1000 A 1 HETATM 3 C C2 GOL . . . E 3 40.821 27.734 4.016 1 72.5 ? C2 GOL 1000 A 1 HETATM 4 O O2 GOL . . . E 3 40.03 28.888 4.226 1 74.24 ? O2 GOL 1000 A 1 HETATM 5 C C3 GOL . . . E 3 42.043 27.8 4.828 1 74.1 ? C3 GOL 1000 A 1 HETATM 6 O O3 GOL . . . E 3 43.029 26.869 4.249 1 75.07 ? O3 GOL 1000 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 236 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 6 #