data_1P8T # _model_server_result.job_id bFChknTew6WVrSQK6LUmmQ _model_server_result.datetime_utc '2025-02-05 07:38:12' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1p8t # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":402}' # _entry.id 1P8T # _exptl.entry_id 1P8T _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 3 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-alpha-D-glucopyranose _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1P8T _cell.length_a 123.958 _cell.length_b 123.958 _cell.length_c 120.173 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1P8T _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 1 A CYS 27 1_555 A SG CYS 7 A CYS 33 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf2 A SG CYS 5 A CYS 31 1_555 A SG CYS 17 A CYS 43 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf3 A SG CYS 238 A CYS 264 1_555 A SG CYS 261 A CYS 287 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf4 A SG CYS 240 A CYS 266 1_555 A SG CYS 283 A CYS 309 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NDG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-alpha-D-glucopyranose _chem_comp.type 'd-saccharide, alpha linking' _chem_comp.pdbx_synonyms N-acetyl-alpha-D-glucosamine;2-acetamido-2-deoxy-alpha-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOPYRANOSE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NDG sing 265 n n C1 O5 NDG sing 266 n n C1 O1 NDG sing 267 n n C1 H1 NDG sing 268 n n C2 C3 NDG sing 269 n n C2 N2 NDG sing 270 n n C2 H2 NDG sing 271 n n C3 C4 NDG sing 272 n n C3 O3 NDG sing 273 n n C3 H3 NDG sing 274 n n C4 C5 NDG sing 275 n n C4 O4 NDG sing 276 n n C4 H4 NDG sing 277 n n C5 C6 NDG sing 278 n n C5 O5 NDG sing 279 n n C5 H5 NDG sing 280 n n C6 O6 NDG sing 281 n n C6 H61 NDG sing 282 n n C6 H62 NDG sing 283 n n C7 C8 NDG sing 284 n n C7 O7 NDG doub 285 n n C7 N2 NDG sing 286 n n C8 H81 NDG sing 287 n n C8 H82 NDG sing 288 n n C8 H83 NDG sing 289 n n O3 HO3 NDG sing 290 n n O4 HO4 NDG sing 291 n n O6 HO6 NDG sing 292 n n N2 HN2 NDG sing 293 n n O1 HO1 NDG sing 294 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NDG DGlcpNAca 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NDG N-acetyl-a-D-glucopyranosamine 'COMMON NAME' GMML 1 NDG a-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NDG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 1P8T _atom_sites.fract_transf_matrix[1][1] 0.008067 _atom_sites.fract_transf_matrix[1][2] 0.004658 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009315 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008321 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAG A 1 401 401 NAG NAG . C 3 NDG A 1 402 402 NDG NAG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NDG . . . C 3 34.377 -32.712 -10.362 1 59.03 ? C1 NDG 402 A 1 HETATM 2 C C2 NDG . . . C 3 33.549 -33.701 -11.23 1 59.68 ? C2 NDG 402 A 1 HETATM 3 C C3 NDG . . . C 3 33.102 -33.071 -12.59 1 59.51 ? C3 NDG 402 A 1 HETATM 4 C C4 NDG . . . C 3 32.63 -31.615 -12.441 1 59.39 ? C4 NDG 402 A 1 HETATM 5 C C5 NDG . . . C 3 33.592 -30.824 -11.566 1 59.07 ? C5 NDG 402 A 1 HETATM 6 C C6 NDG . . . C 3 33.143 -29.391 -11.36 1 58.18 ? C6 NDG 402 A 1 HETATM 7 C C7 NDG . . . C 3 34.839 -35.651 -10.496 1 60.53 ? C7 NDG 402 A 1 HETATM 8 C C8 NDG . . . C 3 36.088 -36.452 -10.847 1 59.96 ? C8 NDG 402 A 1 HETATM 9 O O5 NDG . . . C 3 33.706 -31.448 -10.274 1 58.87 ? O5 NDG 402 A 1 HETATM 10 O O3 NDG . . . C 3 32.033 -33.837 -13.153 1 58.92 ? O3 NDG 402 A 1 HETATM 11 O O4 NDG . . . C 3 32.551 -31.008 -13.725 1 60.45 ? O4 NDG 402 A 1 HETATM 12 O O6 NDG . . . C 3 33.719 -28.548 -12.35 1 57.01 ? O6 NDG 402 A 1 HETATM 13 O O7 NDG . . . C 3 34.363 -35.71 -9.344 1 60.13 ? O7 NDG 402 A 1 HETATM 14 N N2 NDG . . . C 3 34.315 -34.921 -11.488 1 60.43 ? N2 NDG 402 A 1 HETATM 15 O O1 NDG . . . C 3 35.632 -32.499 -10.93 1 59.22 ? O1 NDG 402 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 269 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 15 #