data_1P9L # _model_server_result.job_id Cn-Od4wM3EY1WHSE36usKA _model_server_result.datetime_utc '2024-11-07 23:31:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1p9l # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":301}' # _entry.id 1P9L # _exptl.entry_id 1P9L _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 665.441 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1P9L _cell.length_a 119.29 _cell.length_b 117.28 _cell.length_c 78.54 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1P9L _symmetry.cell_setting ? _symmetry.Int_Tables_number 24 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'I 21 21 21' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 6_755 -x+2,-y+1/2,z -1 0 0 0 -1 0 0 0 1 238.58 58.64 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # _chem_comp.formula 'C21 H29 N7 O14 P2' _chem_comp.formula_weight 665.441 _chem_comp.id NAI _chem_comp.mon_nstd_flag . _chem_comp.name '1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms NADH # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAI doub 224 n n PA O2A NAI sing 225 n n PA O5B NAI sing 226 n n PA O3 NAI sing 227 n n O2A HOA2 NAI sing 228 n n O5B C5B NAI sing 229 n n C5B C4B NAI sing 230 n n C5B H51A NAI sing 231 n n C5B H52A NAI sing 232 n n C4B O4B NAI sing 233 n n C4B C3B NAI sing 234 n n C4B H4B NAI sing 235 n n O4B C1B NAI sing 236 n n C3B O3B NAI sing 237 n n C3B C2B NAI sing 238 n n C3B H3B NAI sing 239 n n O3B HO3A NAI sing 240 n n C2B O2B NAI sing 241 n n C2B C1B NAI sing 242 n n C2B H2B NAI sing 243 n n O2B HO2A NAI sing 244 n n C1B N9A NAI sing 245 n n C1B H1B NAI sing 246 n n N9A C8A NAI sing 247 n y N9A C4A NAI sing 248 n y C8A N7A NAI doub 249 n y C8A H8A NAI sing 250 n n N7A C5A NAI sing 251 n y C5A C6A NAI sing 252 n y C5A C4A NAI doub 253 n y C6A N6A NAI sing 254 n n C6A N1A NAI doub 255 n y N6A H61A NAI sing 256 n n N6A H62A NAI sing 257 n n N1A C2A NAI sing 258 n y C2A N3A NAI doub 259 n y C2A H2A NAI sing 260 n n N3A C4A NAI sing 261 n y O3 PN NAI sing 262 n n PN O1N NAI sing 263 n n PN O2N NAI doub 264 n n PN O5D NAI sing 265 n n O1N HO1N NAI sing 266 n n O5D C5D NAI sing 267 n n C5D C4D NAI sing 268 n n C5D H51N NAI sing 269 n n C5D H52N NAI sing 270 n n C4D O4D NAI sing 271 n n C4D C3D NAI sing 272 n n C4D H4D NAI sing 273 n n O4D C1D NAI sing 274 n n C3D O3D NAI sing 275 n n C3D C2D NAI sing 276 n n C3D H3D NAI sing 277 n n O3D HO3N NAI sing 278 n n C2D O2D NAI sing 279 n n C2D C1D NAI sing 280 n n C2D H2D NAI sing 281 n n O2D HO2N NAI sing 282 n n C1D N1N NAI sing 283 n n C1D H1D NAI sing 284 n n N1N C2N NAI sing 285 n n N1N C6N NAI sing 286 n n C2N C3N NAI doub 287 n n C2N H2N NAI sing 288 n n C3N C7N NAI sing 289 n n C3N C4N NAI sing 290 n n C7N O7N NAI doub 291 n n C7N N7N NAI sing 292 n n N7N H71N NAI sing 293 n n N7N H72N NAI sing 294 n n C4N C5N NAI sing 295 n n C4N H4N NAI sing 296 n n C4N H42N NAI sing 297 n n C5N C6N NAI doub 298 n n C5N H5N NAI sing 299 n n C6N H6N NAI sing 300 n n # _atom_sites.entry_id 1P9L _atom_sites.fract_transf_matrix[1][1] 0.008383 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008527 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012732 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NAI A 1 301 301 NAI NAD . D 3 PDC A 1 302 302 PDC PDC . E 2 NAI B 1 401 301 NAI NAD . F 3 PDC B 1 402 302 PDC PDC . G 4 PG4 B 1 2000 2000 PG4 PEG . H 5 HOH A 1 901 901 HOH HOH . H 5 HOH A 2 902 902 HOH HOH . H 5 HOH A 3 903 903 HOH HOH . H 5 HOH A 4 904 904 HOH HOH . H 5 HOH A 5 905 905 HOH HOH . H 5 HOH A 6 906 906 HOH HOH . H 5 HOH A 7 907 907 HOH HOH . H 5 HOH A 8 908 908 HOH HOH . H 5 HOH A 9 909 909 HOH HOH . H 5 HOH A 10 910 910 HOH HOH . H 5 HOH A 11 911 911 HOH HOH . H 5 HOH A 12 912 912 HOH HOH . H 5 HOH A 13 913 913 HOH HOH . H 5 HOH A 14 914 914 HOH HOH . H 5 HOH A 15 916 916 HOH HOH . H 5 HOH A 16 917 917 HOH HOH . H 5 HOH A 17 918 918 HOH HOH . H 5 HOH A 18 919 919 HOH HOH . H 5 HOH A 19 920 920 HOH HOH . H 5 HOH A 20 921 921 HOH HOH . H 5 HOH A 21 922 922 HOH HOH . H 5 HOH A 22 923 923 HOH HOH . H 5 HOH A 23 924 924 HOH HOH . H 5 HOH A 24 925 925 HOH HOH . H 5 HOH A 25 926 926 HOH HOH . H 5 HOH A 26 927 927 HOH HOH . H 5 HOH A 27 928 928 HOH HOH . H 5 HOH A 28 929 929 HOH HOH . H 5 HOH A 29 930 930 HOH HOH . H 5 HOH A 30 931 931 HOH HOH . H 5 HOH A 31 932 932 HOH HOH . H 5 HOH A 32 933 933 HOH HOH . H 5 HOH A 33 934 934 HOH HOH . H 5 HOH A 34 935 935 HOH HOH . H 5 HOH A 35 936 936 HOH HOH . H 5 HOH A 36 937 937 HOH HOH . H 5 HOH A 37 938 938 HOH HOH . H 5 HOH A 38 939 939 HOH HOH . H 5 HOH A 39 940 940 HOH HOH . H 5 HOH A 40 941 941 HOH HOH . H 5 HOH A 41 942 942 HOH HOH . H 5 HOH A 42 943 943 HOH HOH . H 5 HOH A 43 944 944 HOH HOH . H 5 HOH A 44 945 945 HOH HOH . H 5 HOH A 45 946 946 HOH HOH . H 5 HOH A 46 947 947 HOH HOH . H 5 HOH A 47 948 948 HOH HOH . H 5 HOH A 48 949 949 HOH HOH . H 5 HOH A 49 950 950 HOH HOH . H 5 HOH A 50 951 951 HOH HOH . H 5 HOH A 51 952 952 HOH HOH . H 5 HOH A 52 953 953 HOH HOH . H 5 HOH A 53 954 954 HOH HOH . H 5 HOH A 54 955 955 HOH HOH . H 5 HOH A 55 956 956 HOH HOH . H 5 HOH A 56 957 957 HOH HOH . H 5 HOH A 57 1406 1406 HOH HOH . H 5 HOH A 58 1419 1419 HOH HOH . H 5 HOH A 59 1426 1426 HOH HOH . H 5 HOH A 60 1438 1438 HOH HOH . I 5 HOH B 1 915 915 HOH HOH . I 5 HOH B 2 1401 1401 HOH HOH . I 5 HOH B 3 1402 1402 HOH HOH . I 5 HOH B 4 1403 1403 HOH HOH . I 5 HOH B 5 1404 1404 HOH HOH . I 5 HOH B 6 1405 1405 HOH HOH . I 5 HOH B 7 1407 1407 HOH HOH . I 5 HOH B 8 1408 1408 HOH HOH . I 5 HOH B 9 1409 1409 HOH HOH . I 5 HOH B 10 1410 1410 HOH HOH . I 5 HOH B 11 1411 1411 HOH HOH . I 5 HOH B 12 1412 1412 HOH HOH . I 5 HOH B 13 1413 1413 HOH HOH . I 5 HOH B 14 1414 1414 HOH HOH . I 5 HOH B 15 1415 1415 HOH HOH . I 5 HOH B 16 1416 1416 HOH HOH . I 5 HOH B 17 1417 1417 HOH HOH . I 5 HOH B 18 1418 1418 HOH HOH . I 5 HOH B 19 1420 1420 HOH HOH . I 5 HOH B 20 1421 1421 HOH HOH . I 5 HOH B 21 1422 1422 HOH HOH . I 5 HOH B 22 1423 1423 HOH HOH . I 5 HOH B 23 1424 1424 HOH HOH . I 5 HOH B 24 1425 1425 HOH HOH . I 5 HOH B 25 1427 1427 HOH HOH . I 5 HOH B 26 1428 1428 HOH HOH . I 5 HOH B 27 1429 1429 HOH HOH . I 5 HOH B 28 1430 1430 HOH HOH . I 5 HOH B 29 1431 1431 HOH HOH . I 5 HOH B 30 1432 1432 HOH HOH . I 5 HOH B 31 1433 1433 HOH HOH . I 5 HOH B 32 1434 1434 HOH HOH . I 5 HOH B 33 1435 1435 HOH HOH . I 5 HOH B 34 1436 1436 HOH HOH . I 5 HOH B 35 1437 1437 HOH HOH . I 5 HOH B 36 1439 1439 HOH HOH . I 5 HOH B 37 1440 1440 HOH HOH . I 5 HOH B 38 1441 1441 HOH HOH . I 5 HOH B 39 1442 1442 HOH HOH . I 5 HOH B 40 1443 1443 HOH HOH . I 5 HOH B 41 1444 1444 HOH HOH . I 5 HOH B 42 1445 1445 HOH HOH . I 5 HOH B 43 1446 1446 HOH HOH . I 5 HOH B 44 1447 1447 HOH HOH . I 5 HOH B 45 1448 1448 HOH HOH . I 5 HOH B 46 1449 1449 HOH HOH . I 5 HOH B 47 1450 1450 HOH HOH . I 5 HOH B 48 1451 1451 HOH HOH . I 5 HOH B 49 1452 1452 HOH HOH . I 5 HOH B 50 1453 1453 HOH HOH . I 5 HOH B 51 1454 1454 HOH HOH . I 5 HOH B 52 1455 1455 HOH HOH . I 5 HOH B 53 1456 1456 HOH HOH . I 5 HOH B 54 1457 1457 HOH HOH . I 5 HOH B 55 1458 1458 HOH HOH . I 5 HOH B 56 1459 1459 HOH HOH . I 5 HOH B 57 1460 1460 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAI . . . C 2 139.552 16.209 24.403 1 24.96 ? PA NAI 301 A 1 HETATM 2 O O1A NAI . . . C 2 140.609 15.971 23.432 1 33.44 ? O1A NAI 301 A 1 HETATM 3 O O2A NAI . . . C 2 138.38 15.361 24.316 1 31.19 ? O2A NAI 301 A 1 HETATM 4 O O5B NAI . . . C 2 140.145 16.271 25.852 1 30.34 ? O5B NAI 301 A 1 HETATM 5 C C5B NAI . . . C 2 141.639 16.73 25.905 1 26.92 ? C5B NAI 301 A 1 HETATM 6 C C4B NAI . . . C 2 142.792 15.774 25.616 1 24.91 ? C4B NAI 301 A 1 HETATM 7 O O4B NAI . . . C 2 144.082 16.194 26.147 1 31.72 ? O4B NAI 301 A 1 HETATM 8 C C3B NAI . . . C 2 142.654 14.306 26.079 1 30.41 ? C3B NAI 301 A 1 HETATM 9 O O3B NAI . . . C 2 143.465 13.542 25.192 1 25.77 ? O3B NAI 301 A 1 HETATM 10 C C2B NAI . . . C 2 143.374 14.357 27.445 1 33.26 ? C2B NAI 301 A 1 HETATM 11 O O2B NAI . . . C 2 143.838 13.052 27.765 1 34.53 ? O2B NAI 301 A 1 HETATM 12 C C1B NAI . . . C 2 144.565 15.169 27.056 1 34.27 ? C1B NAI 301 A 1 HETATM 13 N N9A NAI . . . C 2 145.359 15.733 28.203 1 33.95 ? N9A NAI 301 A 1 HETATM 14 C C8A NAI . . . C 2 144.664 15.914 29.364 1 34.4 ? C8A NAI 301 A 1 HETATM 15 N N7A NAI . . . C 2 145.415 16.387 30.394 1 33.87 ? N7A NAI 301 A 1 HETATM 16 C C5A NAI . . . C 2 146.596 16.499 29.791 1 38.51 ? C5A NAI 301 A 1 HETATM 17 C C6A NAI . . . C 2 147.762 16.947 30.358 1 40.98 ? C6A NAI 301 A 1 HETATM 18 N N6A NAI . . . C 2 147.828 17.334 31.633 1 45.48 ? N6A NAI 301 A 1 HETATM 19 N N1A NAI . . . C 2 148.909 17.011 29.596 1 40.27 ? N1A NAI 301 A 1 HETATM 20 C C2A NAI . . . C 2 148.801 16.599 28.299 1 36.1 ? C2A NAI 301 A 1 HETATM 21 N N3A NAI . . . C 2 147.663 16.15 27.708 1 33.99 ? N3A NAI 301 A 1 HETATM 22 C C4A NAI . . . C 2 146.566 16.124 28.512 1 35.08 ? C4A NAI 301 A 1 HETATM 23 O O3 NAI . . . C 2 139.101 17.739 24.225 1 29.42 ? O3 NAI 301 A 1 HETATM 24 P PN NAI . . . C 2 138.964 18.582 22.868 1 24.58 ? PN NAI 301 A 1 HETATM 25 O O1N NAI . . . C 2 137.576 18.414 22.371 1 26.07 ? O1N NAI 301 A 1 HETATM 26 O O2N NAI . . . C 2 140.114 18.218 21.97 1 25.48 ? O2N NAI 301 A 1 HETATM 27 O O5D NAI . . . C 2 139.084 20.017 23.388 1 24.08 ? O5D NAI 301 A 1 HETATM 28 C C5D NAI . . . C 2 140.417 20.499 23.842 1 18.95 ? C5D NAI 301 A 1 HETATM 29 C C4D NAI . . . C 2 140.409 21.83 24.527 1 16.08 ? C4D NAI 301 A 1 HETATM 30 O O4D NAI . . . C 2 140.594 22.872 23.556 1 18.96 ? O4D NAI 301 A 1 HETATM 31 C C3D NAI . . . C 2 139.113 22.202 25.265 1 16.78 ? C3D NAI 301 A 1 HETATM 32 O O3D NAI . . . C 2 139.33 23.111 26.335 1 13.43 ? O3D NAI 301 A 1 HETATM 33 C C2D NAI . . . C 2 138.283 22.824 24.077 1 18.18 ? C2D NAI 301 A 1 HETATM 34 O O2D NAI . . . C 2 137.179 23.593 24.506 1 17.78 ? O2D NAI 301 A 1 HETATM 35 C C1D NAI . . . C 2 139.386 23.671 23.428 1 19.07 ? C1D NAI 301 A 1 HETATM 36 N N1N NAI . . . C 2 139.276 23.99 21.987 1 16.97 ? N1N NAI 301 A 1 HETATM 37 C C2N NAI . . . C 2 139.733 25.25 21.605 1 15.92 ? C2N NAI 301 A 1 HETATM 38 C C3N NAI . . . C 2 139.719 25.645 20.239 1 16.29 ? C3N NAI 301 A 1 HETATM 39 C C7N NAI . . . C 2 140.24 26.889 19.82 1 14.74 ? C7N NAI 301 A 1 HETATM 40 O O7N NAI . . . C 2 140.154 27.217 18.66 1 14.91 ? O7N NAI 301 A 1 HETATM 41 N N7N NAI . . . C 2 140.842 27.628 20.756 1 9.93 ? N7N NAI 301 A 1 HETATM 42 C C4N NAI . . . C 2 139.209 24.694 19.28 1 19.95 ? C4N NAI 301 A 1 HETATM 43 C C5N NAI . . . C 2 138.733 23.403 19.685 1 17.02 ? C5N NAI 301 A 1 HETATM 44 C C6N NAI . . . C 2 138.771 23.058 21.051 1 16.55 ? C6N NAI 301 A 1 # _model_server_stats.io_time_ms 58 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 355 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 44 #