data_1P9P # _model_server_result.job_id pNGpQugcJw7uCiCnSciz-g _model_server_result.datetime_utc '2024-12-01 09:52:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1p9p # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":300}' # _entry.id 1P9P # _exptl.entry_id 1P9P _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 384.411 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description S-ADENOSYL-L-HOMOCYSTEINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1P9P _cell.length_a 97.255 _cell.length_b 97.255 _cell.length_c 62.661 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1P9P _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 PISA,PQS dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C 1 1 A,B,C 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_556 y,x,-z+1 -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 62.661 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C14 H20 N6 O5 S' _chem_comp.formula_weight 384.411 _chem_comp.id SAH _chem_comp.mon_nstd_flag n _chem_comp.name S-ADENOSYL-L-HOMOCYSTEINE _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA SAH sing 277 n n N HN1 SAH sing 278 n n N HN2 SAH sing 279 n n CA CB SAH sing 280 n n CA C SAH sing 281 n n CA HA SAH sing 282 n n CB CG SAH sing 283 n n CB HB1 SAH sing 284 n n CB HB2 SAH sing 285 n n CG SD SAH sing 286 n n CG HG1 SAH sing 287 n n CG HG2 SAH sing 288 n n SD C5' SAH sing 289 n n C O SAH doub 290 n n C OXT SAH sing 291 n n OXT HXT SAH sing 292 n n C5' C4' SAH sing 293 n n C5' "H5'1" SAH sing 294 n n C5' "H5'2" SAH sing 295 n n C4' O4' SAH sing 296 n n C4' C3' SAH sing 297 n n C4' H4' SAH sing 298 n n O4' C1' SAH sing 299 n n C3' O3' SAH sing 300 n n C3' C2' SAH sing 301 n n C3' H3' SAH sing 302 n n O3' HO3' SAH sing 303 n n C2' O2' SAH sing 304 n n C2' C1' SAH sing 305 n n C2' H2' SAH sing 306 n n O2' HO2' SAH sing 307 n n C1' N9 SAH sing 308 n n C1' H1' SAH sing 309 n n N9 C8 SAH sing 310 n y N9 C4 SAH sing 311 n y C8 N7 SAH doub 312 n y C8 H8 SAH sing 313 n n N7 C5 SAH sing 314 n y C5 C6 SAH sing 315 n y C5 C4 SAH doub 316 n y C6 N6 SAH sing 317 n n C6 N1 SAH doub 318 n y N6 HN61 SAH sing 319 n n N6 HN62 SAH sing 320 n n N1 C2 SAH sing 321 n y C2 N3 SAH doub 322 n y C2 H2 SAH sing 323 n n N3 C4 SAH sing 324 n y # _atom_sites.entry_id 1P9P _atom_sites.fract_transf_matrix[1][1] 0.010282 _atom_sites.fract_transf_matrix[1][2] 0.005936 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011873 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015959 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SAH A 1 300 300 SAH SAH . C 3 HOH A 1 401 401 HOH HOH . C 3 HOH A 2 402 402 HOH HOH . C 3 HOH A 3 403 403 HOH HOH . C 3 HOH A 4 404 404 HOH HOH . C 3 HOH A 5 405 405 HOH HOH . C 3 HOH A 6 406 406 HOH HOH . C 3 HOH A 7 407 407 HOH HOH . C 3 HOH A 8 408 408 HOH HOH . C 3 HOH A 9 409 409 HOH HOH . C 3 HOH A 10 410 410 HOH HOH . C 3 HOH A 11 411 411 HOH HOH . C 3 HOH A 12 412 412 HOH HOH . C 3 HOH A 13 413 413 HOH HOH . C 3 HOH A 14 414 414 HOH HOH . C 3 HOH A 15 415 415 HOH HOH . C 3 HOH A 16 416 416 HOH HOH . C 3 HOH A 17 417 417 HOH HOH . C 3 HOH A 18 418 418 HOH HOH . C 3 HOH A 19 419 419 HOH HOH . C 3 HOH A 20 420 420 HOH HOH . C 3 HOH A 21 421 421 HOH HOH . C 3 HOH A 22 422 422 HOH HOH . C 3 HOH A 23 423 423 HOH HOH . C 3 HOH A 24 424 424 HOH HOH . C 3 HOH A 25 425 425 HOH HOH . C 3 HOH A 26 426 426 HOH HOH . C 3 HOH A 27 427 427 HOH HOH . C 3 HOH A 28 428 428 HOH HOH . C 3 HOH A 29 429 429 HOH HOH . C 3 HOH A 30 430 430 HOH HOH . C 3 HOH A 31 431 431 HOH HOH . C 3 HOH A 32 432 432 HOH HOH . C 3 HOH A 33 433 433 HOH HOH . C 3 HOH A 34 434 434 HOH HOH . C 3 HOH A 35 435 435 HOH HOH . C 3 HOH A 36 436 436 HOH HOH . C 3 HOH A 37 437 437 HOH HOH . C 3 HOH A 38 438 438 HOH HOH . C 3 HOH A 39 439 439 HOH HOH . C 3 HOH A 40 440 440 HOH HOH . C 3 HOH A 41 441 441 HOH HOH . C 3 HOH A 42 442 442 HOH HOH . C 3 HOH A 43 443 443 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N SAH . . . B 2 36.471 37.327 41.271 1 85.51 ? N SAH 300 A 1 HETATM 2 C CA SAH . . . B 2 36.163 38.68 41.637 1 85.25 ? CA SAH 300 A 1 HETATM 3 C CB SAH . . . B 2 35.913 39.407 40.348 1 83 ? CB SAH 300 A 1 HETATM 4 C CG SAH . . . B 2 36.235 40.826 40.469 1 79.05 ? CG SAH 300 A 1 HETATM 5 S SD SAH . . . B 2 36.624 41.802 39.037 1 77.85 ? SD SAH 300 A 1 HETATM 6 C C SAH . . . B 2 34.895 38.73 42.409 1 91.51 ? C SAH 300 A 1 HETATM 7 O O SAH . . . B 2 34.938 37.969 43.375 1 97.22 ? O SAH 300 A 1 HETATM 8 O OXT SAH . . . B 2 34.659 39.922 42.808 1 92.52 ? OXT SAH 300 A 1 HETATM 9 C C5' SAH . . . B 2 36.76 43.333 39.659 1 70.87 ? C5' SAH 300 A 1 HETATM 10 C C4' SAH . . . B 2 35.69 44.191 40.278 1 65.29 ? C4' SAH 300 A 1 HETATM 11 O O4' SAH . . . B 2 34.962 44.995 39.245 1 63.45 ? O4' SAH 300 A 1 HETATM 12 C C3' SAH . . . B 2 34.617 43.634 41.325 1 60.29 ? C3' SAH 300 A 1 HETATM 13 O O3' SAH . . . B 2 35.048 44.016 42.587 1 63.51 ? O3' SAH 300 A 1 HETATM 14 C C2' SAH . . . B 2 33.278 44.279 40.754 1 61.59 ? C2' SAH 300 A 1 HETATM 15 O O2' SAH . . . B 2 32.812 45.352 41.669 1 63.22 ? O2' SAH 300 A 1 HETATM 16 C C1' SAH . . . B 2 33.537 44.854 39.347 1 59.97 ? C1' SAH 300 A 1 HETATM 17 N N9 SAH . . . B 2 32.922 43.853 38.348 1 55.22 ? N9 SAH 300 A 1 HETATM 18 C C8 SAH . . . B 2 33.519 43.015 37.442 1 57.94 ? C8 SAH 300 A 1 HETATM 19 N N7 SAH . . . B 2 32.804 42.354 36.705 1 53.32 ? N7 SAH 300 A 1 HETATM 20 C C5 SAH . . . B 2 31.507 42.755 37.086 1 56.64 ? C5 SAH 300 A 1 HETATM 21 C C6 SAH . . . B 2 30.078 42.453 36.642 1 53.07 ? C6 SAH 300 A 1 HETATM 22 N N6 SAH . . . B 2 29.739 41.631 35.702 1 58.78 ? N6 SAH 300 A 1 HETATM 23 N N1 SAH . . . B 2 29.06 43.101 37.313 1 52.86 ? N1 SAH 300 A 1 HETATM 24 C C2 SAH . . . B 2 29.296 43.973 38.353 1 45.62 ? C2 SAH 300 A 1 HETATM 25 N N3 SAH . . . B 2 30.517 44.291 38.806 1 53.49 ? N3 SAH 300 A 1 HETATM 26 C C4 SAH . . . B 2 31.593 43.674 38.128 1 54.54 ? C4 SAH 300 A 1 # _model_server_stats.io_time_ms 64 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 230 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 26 #