data_1P9S
#
_model_server_result.job_id            28IfdDBKThJnhCuPHTiCRQ 
_model_server_result.datetime_utc      '2024-10-12 22:13:40' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1p9s 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":301}' 
#
_entry.id    1P9S 
#
_exptl.entry_id    1P9S 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              88.105 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '1,4-DIETHYLENE DIOXIDE' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          103.7 
_cell.angle_gamma         90 
_cell.entry_id            1P9S 
_cell.length_a            53.356 
_cell.length_b            76.24 
_cell.length_c            73.477 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1P9S 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,E 1 1 
B,D,F 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C LYS 5 A LYS 5 1_555 A N MSE 6 A MSE 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.321 ? 
covale ? covale2 A C MSE 6 A MSE 6 1_555 A N ALA 7 A ALA 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? 
covale ? covale3 A C ILE 59 A ILE 59 1_555 A N MSE 60 A MSE 60 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.313 ? 
covale ? covale4 A C MSE 60 A MSE 60 1_555 A N ARG 61 A ARG 61 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.346 ? 
covale ? covale5 A C THR 80 A THR 80 1_555 A N MSE 81 A MSE 81 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? 
covale ? covale6 A C MSE 81 A MSE 81 1_555 A N HIS 82 A HIS 82 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? 
covale ? covale7 A C ASN 94 A ASN 94 1_555 A N MSE 95 A MSE 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.305 ? 
covale ? covale8 A C MSE 95 A MSE 95 1_555 A N HIS 96 A HIS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale9 A C ASN 128 A ASN 128 1_555 A N MSE 129 A MSE 129 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? 
covale ? covale10 A C MSE 129 A MSE 129 1_555 A N ARG 130 A ARG 130 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? 
covale ? covale11 A C TYR 160 A TYR 160 1_555 A N MSE 161 A MSE 161 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.307 ? 
covale ? covale12 A C MSE 161 A MSE 161 1_555 A N HIS 162 A HIS 162 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.307 ? 
covale ? covale13 A C VAL 179 A VAL 179 1_555 A N MSE 180 A MSE 180 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.318 ? 
covale ? covale14 A C MSE 180 A MSE 180 1_555 A N TYR 181 A TYR 181 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? 
covale ? covale15 A C GLN 197 A GLN 197 1_555 A N MSE 198 A MSE 198 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? 
covale ? covale16 A C MSE 198 A MSE 198 1_555 A N LEU 199 A LEU 199 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? 
covale ? covale17 A C ALA 240 A ALA 240 1_555 A N MSE 241 A MSE 241 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale18 A C MSE 241 A MSE 241 1_555 A N ASN 242 A ASN 242 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.314 ? 
covale ? covale19 A C GLN 295 A GLN 295 1_555 A N MSE 296 A MSE 296 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? 
covale ? covale20 A C MSE 296 A MSE 296 1_555 A N PHE 297 A PHE 297 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale21 B C LYS 5 B LYS 5 1_555 B N MSE 6 B MSE 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? 
covale ? covale22 B C MSE 6 B MSE 6 1_555 B N ALA 7 B ALA 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.315 ? 
covale ? covale23 B C ILE 59 B ILE 59 1_555 B N MSE 60 B MSE 60 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? 
covale ? covale24 B C MSE 60 B MSE 60 1_555 B N ARG 61 B ARG 61 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? 
covale ? covale25 B C THR 80 B THR 80 1_555 B N MSE 81 B MSE 81 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? 
covale ? covale26 B C MSE 81 B MSE 81 1_555 B N HIS 82 B HIS 82 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? 
covale ? covale27 B C ASN 94 B ASN 94 1_555 B N MSE 95 B MSE 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? 
covale ? covale28 B C MSE 95 B MSE 95 1_555 B N HIS 96 B HIS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? 
covale ? covale29 B C ASN 128 B ASN 128 1_555 B N MSE 129 B MSE 129 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? 
covale ? covale30 B C MSE 129 B MSE 129 1_555 B N ARG 130 B ARG 130 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.296 ? 
covale ? covale31 B C TYR 160 B TYR 160 1_555 B N MSE 161 B MSE 161 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.312 ? 
covale ? covale32 B C MSE 161 B MSE 161 1_555 B N HIS 162 B HIS 162 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.32 ? 
covale ? covale33 B C VAL 179 B VAL 179 1_555 B N MSE 180 B MSE 180 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.313 ? 
covale ? covale34 B C MSE 180 B MSE 180 1_555 B N TYR 181 B TYR 181 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? 
covale ? covale35 B C GLN 197 B GLN 197 1_555 B N MSE 198 B MSE 198 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale36 B C MSE 198 B MSE 198 1_555 B N LEU 199 B LEU 199 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? 
covale ? covale37 B C ALA 240 B ALA 240 1_555 B N MSE 241 B MSE 241 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale38 B C MSE 241 B MSE 241 1_555 B N ASN 242 B ASN 242 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? 
covale ? covale39 B C GLN 295 B GLN 295 1_555 B N MSE 296 B MSE 296 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? 
covale ? covale40 B C MSE 296 B MSE 296 1_555 B N PHE 297 B PHE 297 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.353 ? 
#
_chem_comp.formula           'C4 H8 O2' 
_chem_comp.formula_weight    88.105 
_chem_comp.id                DIO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '1,4-DIETHYLENE DIOXIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C1' DIO sing 83 n n 
C1 O1 DIO sing 84 n n 
C1 H11 DIO sing 85 n n 
C1 H12 DIO sing 86 n n 
C2 C2' DIO sing 87 n n 
C2 O1 DIO sing 88 n n 
C2 H21 DIO sing 89 n n 
C2 H22 DIO sing 90 n n 
C1' O1' DIO sing 91 n n 
C1' "H1'1" DIO sing 92 n n 
C1' "H1'2" DIO sing 93 n n 
C2' O1' DIO sing 94 n n 
C2' "H2'1" DIO sing 95 n n 
C2' "H2'2" DIO sing 96 n n 
#
_atom_sites.entry_id                     1P9S 
_atom_sites.fract_transf_matrix[1][1]    0.018742 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.004569 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013116 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.014008 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 DIO A 1 301 1 DIO DOX . 
D 2 DIO B 1 301 2 DIO DOX . 
E 3 HOH A 1 302 4 HOH HOH . 
E 3 HOH A 2 303 6 HOH HOH . 
E 3 HOH A 3 304 9 HOH HOH . 
E 3 HOH A 4 305 11 HOH HOH . 
E 3 HOH A 5 306 13 HOH HOH . 
E 3 HOH A 6 307 14 HOH HOH . 
E 3 HOH A 7 308 18 HOH HOH . 
E 3 HOH A 8 309 21 HOH HOH . 
E 3 HOH A 9 310 22 HOH HOH . 
E 3 HOH A 10 311 23 HOH HOH . 
E 3 HOH A 11 312 24 HOH HOH . 
E 3 HOH A 12 313 26 HOH HOH . 
E 3 HOH A 13 314 27 HOH HOH . 
E 3 HOH A 14 315 32 HOH HOH . 
E 3 HOH A 15 316 33 HOH HOH . 
E 3 HOH A 16 317 34 HOH HOH . 
F 3 HOH B 1 302 3 HOH HOH . 
F 3 HOH B 2 303 7 HOH HOH . 
F 3 HOH B 3 304 10 HOH HOH . 
F 3 HOH B 4 305 12 HOH HOH . 
F 3 HOH B 5 306 15 HOH HOH . 
F 3 HOH B 6 307 16 HOH HOH . 
F 3 HOH B 7 308 17 HOH HOH . 
F 3 HOH B 8 309 28 HOH HOH . 
F 3 HOH B 9 310 29 HOH HOH . 
F 3 HOH B 10 311 30 HOH HOH . 
F 3 HOH B 11 312 31 HOH HOH . 
F 3 HOH B 12 313 35 HOH HOH . 
F 3 HOH B 13 314 36 HOH HOH . 
F 3 HOH B 14 315 37 HOH HOH . 
F 3 HOH B 15 316 38 HOH HOH . 
F 3 HOH B 16 317 39 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 DIO . . . D 2 53.487 -14.244 3.407 1 45.76 ? C1 DIO 301 B 1 
HETATM 2 C C2 DIO . . . D 2 52.083 -13.848 1.485 1 45.75 ? C2 DIO 301 B 1 
HETATM 3 C C1' DIO . . . D 2 54.59 -13.355 2.777 1 45.53 ? C1' DIO 301 B 1 
HETATM 4 C C2' DIO . . . D 2 53.195 -12.966 0.882 1 45.51 ? C2' DIO 301 B 1 
HETATM 5 O O1 DIO . . . D 2 52.623 -14.818 2.405 1 45.42 ? O1 DIO 301 B 1 
HETATM 6 O O1' DIO . . . D 2 54.029 -12.38 1.894 1 44.93 ? O1' DIO 301 B 1 
#
_model_server_stats.io_time_ms              58 
_model_server_stats.parse_time_ms           20 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           302 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           6 
#