data_1PAG
#
_model_server_result.job_id            LT37NcoUF7Oq3ZropwuJYw 
_model_server_result.datetime_utc      '2024-11-08 19:08:18' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1pag 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":263}' 
#
_entry.id    1PAG 
#
_exptl.entry_id    1PAG 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              347.221 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "FORMYCIN-5'-MONOPHOSPHATE" 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         80 
_cell.angle_beta          113.2 
_cell.angle_gamma         116.5 
_cell.entry_id            1PAG 
_cell.length_a            49.4 
_cell.length_b            50.1 
_cell.length_c            65.2 
_cell.Z_PDB               2 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1PAG 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,E 1 1 
B,D,F 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 34 A CYS 34 1_555 A SG CYS 259 A CYS 259 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? 
disulf ? disulf2 A SG CYS 85 A CYS 85 1_555 A SG CYS 106 A CYS 106 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.978 ? 
disulf ? disulf3 B SG CYS 34 B CYS 34 1_555 B SG CYS 259 B CYS 259 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf4 B SG CYS 85 B CYS 85 1_555 B SG CYS 106 B CYS 106 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.983 ? 
#
_chem_comp.formula           'C10 H14 N5 O7 P' 
_chem_comp.formula_weight    347.221 
_chem_comp.id                FMP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "FORMYCIN-5'-MONOPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
P O1P FMP doub 83 n n 
P O2P FMP sing 84 n n 
P O3P FMP sing 85 n n 
P O5' FMP sing 86 n n 
O2P HOP2 FMP sing 87 n n 
O3P HOP3 FMP sing 88 n n 
O5' C5' FMP sing 89 n n 
C5' C4' FMP sing 90 n n 
C5' "H5'1" FMP sing 91 n n 
C5' "H5'2" FMP sing 92 n n 
C4' O4' FMP sing 93 n n 
C4' C3' FMP sing 94 n n 
C4' H4' FMP sing 95 n n 
O4' C1' FMP sing 96 n n 
C3' O3' FMP sing 97 n n 
C3' C2' FMP sing 98 n n 
C3' H3' FMP sing 99 n n 
O3' HO3' FMP sing 100 n n 
C2' O2' FMP sing 101 n n 
C2' C1' FMP sing 102 n n 
C2' H2' FMP sing 103 n n 
O2' HO2' FMP sing 104 n n 
C1' C9 FMP sing 105 n n 
C1' H1' FMP sing 106 n n 
C9 N8 FMP doub 107 n y 
C9 C4 FMP sing 108 n y 
N8 N7 FMP sing 109 n y 
N7 C5 FMP sing 110 n y 
N7 HN7 FMP sing 111 n n 
C6 N6 FMP sing 112 n n 
C6 C5 FMP sing 113 n y 
C6 N1 FMP doub 114 n y 
N6 HN61 FMP sing 115 n n 
N6 HN62 FMP sing 116 n n 
C5 C4 FMP doub 117 n y 
C4 N3 FMP sing 118 n y 
N3 C2 FMP doub 119 n y 
C2 N1 FMP sing 120 n y 
C2 H2 FMP sing 121 n n 
#
_atom_sites.entry_id                     1PAG 
_atom_sites.fract_transf_matrix[1][1]    0.020243 
_atom_sites.fract_transf_matrix[1][2]    0.010093 
_atom_sites.fract_transf_matrix[1][3]    0.008702 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.022303 
_atom_sites.fract_transf_matrix[2][3]    0.000058 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.016687 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 FMP A 1 263 1 FMP FMP . 
D 2 FMP B 1 263 1 FMP FMP . 
E 3 HOH A 1 602 602 HOH HOH . 
E 3 HOH A 2 603 603 HOH HOH . 
E 3 HOH A 3 604 604 HOH HOH . 
E 3 HOH A 4 605 605 HOH HOH . 
E 3 HOH A 5 606 606 HOH HOH . 
E 3 HOH A 6 607 607 HOH HOH . 
E 3 HOH A 7 608 608 HOH HOH . 
E 3 HOH A 8 609 609 HOH HOH . 
E 3 HOH A 9 612 612 HOH HOH . 
E 3 HOH A 10 615 615 HOH HOH . 
E 3 HOH A 11 617 617 HOH HOH . 
E 3 HOH A 12 618 618 HOH HOH . 
E 3 HOH A 13 619 619 HOH HOH . 
E 3 HOH A 14 622 622 HOH HOH . 
E 3 HOH A 15 623 623 HOH HOH . 
E 3 HOH A 16 625 625 HOH HOH . 
E 3 HOH A 17 626 626 HOH HOH . 
E 3 HOH A 18 630 630 HOH HOH . 
E 3 HOH A 19 632 632 HOH HOH . 
E 3 HOH A 20 638 638 HOH HOH . 
E 3 HOH A 21 640 640 HOH HOH . 
E 3 HOH A 22 642 642 HOH HOH . 
E 3 HOH A 23 643 643 HOH HOH . 
E 3 HOH A 24 646 646 HOH HOH . 
E 3 HOH A 25 648 648 HOH HOH . 
E 3 HOH A 26 649 649 HOH HOH . 
E 3 HOH A 27 650 650 HOH HOH . 
E 3 HOH A 28 729 729 HOH HOH . 
E 3 HOH A 29 801 801 HOH HOH . 
E 3 HOH A 30 803 803 HOH HOH . 
E 3 HOH A 31 807 807 HOH HOH . 
E 3 HOH A 32 822 822 HOH HOH . 
E 3 HOH A 33 824 824 HOH HOH . 
E 3 HOH A 34 828 828 HOH HOH . 
E 3 HOH A 35 829 829 HOH HOH . 
E 3 HOH A 36 830 830 HOH HOH . 
E 3 HOH A 37 833 833 HOH HOH . 
F 3 HOH B 1 629 629 HOH HOH . 
F 3 HOH B 2 702 702 HOH HOH . 
F 3 HOH B 3 703 703 HOH HOH . 
F 3 HOH B 4 704 704 HOH HOH . 
F 3 HOH B 5 705 705 HOH HOH . 
F 3 HOH B 6 706 706 HOH HOH . 
F 3 HOH B 7 707 707 HOH HOH . 
F 3 HOH B 8 708 708 HOH HOH . 
F 3 HOH B 9 709 709 HOH HOH . 
F 3 HOH B 10 712 712 HOH HOH . 
F 3 HOH B 11 715 715 HOH HOH . 
F 3 HOH B 12 717 717 HOH HOH . 
F 3 HOH B 13 718 718 HOH HOH . 
F 3 HOH B 14 719 719 HOH HOH . 
F 3 HOH B 15 722 722 HOH HOH . 
F 3 HOH B 16 723 723 HOH HOH . 
F 3 HOH B 17 725 725 HOH HOH . 
F 3 HOH B 18 726 726 HOH HOH . 
F 3 HOH B 19 730 730 HOH HOH . 
F 3 HOH B 20 732 732 HOH HOH . 
F 3 HOH B 21 738 738 HOH HOH . 
F 3 HOH B 22 740 740 HOH HOH . 
F 3 HOH B 23 742 742 HOH HOH . 
F 3 HOH B 24 743 743 HOH HOH . 
F 3 HOH B 25 746 746 HOH HOH . 
F 3 HOH B 26 748 748 HOH HOH . 
F 3 HOH B 27 749 749 HOH HOH . 
F 3 HOH B 28 750 750 HOH HOH . 
F 3 HOH B 29 802 802 HOH HOH . 
F 3 HOH B 30 804 804 HOH HOH . 
F 3 HOH B 31 805 805 HOH HOH . 
F 3 HOH B 32 809 809 HOH HOH . 
F 3 HOH B 33 811 811 HOH HOH . 
F 3 HOH B 34 815 815 HOH HOH . 
F 3 HOH B 35 819 819 HOH HOH . 
F 3 HOH B 36 820 820 HOH HOH . 
F 3 HOH B 37 826 826 HOH HOH . 
F 3 HOH B 38 827 827 HOH HOH . 
F 3 HOH B 39 916 916 HOH HOH . 
F 3 HOH B 40 936 936 HOH HOH . 
F 3 HOH B 41 941 941 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P P FMP . . . D 2 5.578 12.373 35.417 1 24.17 ? P FMP 263 B 1 
HETATM 2 O O1P FMP . . . D 2 4.957 13.54 34.818 1 27.19 ? O1P FMP 263 B 1 
HETATM 3 O O2P FMP . . . D 2 4.744 11.117 35.597 1 22.33 ? O2P FMP 263 B 1 
HETATM 4 O O3P FMP . . . D 2 6.782 11.927 34.398 1 24.79 ? O3P FMP 263 B 1 
HETATM 5 O O5' FMP . . . D 2 6.099 12.862 36.855 1 26.37 ? O5' FMP 263 B 1 
HETATM 6 C C5' FMP . . . D 2 5.077 13.443 37.754 1 23.09 ? C5' FMP 263 B 1 
HETATM 7 C C4' FMP . . . D 2 5.388 13.708 39.252 1 25.93 ? C4' FMP 263 B 1 
HETATM 8 O O4' FMP . . . D 2 6.16 12.586 39.792 1 25.47 ? O4' FMP 263 B 1 
HETATM 9 C C3' FMP . . . D 2 6.042 15.007 39.672 1 25.24 ? C3' FMP 263 B 1 
HETATM 10 O O3' FMP . . . D 2 5.338 15.587 40.751 1 29.12 ? O3' FMP 263 B 1 
HETATM 11 C C2' FMP . . . D 2 7.336 14.423 40.211 1 25.08 ? C2' FMP 263 B 1 
HETATM 12 O O2' FMP . . . D 2 7.767 15.407 41.17 1 30.55 ? O2' FMP 263 B 1 
HETATM 13 C C1' FMP . . . D 2 6.937 13.121 40.811 1 23.81 ? C1' FMP 263 B 1 
HETATM 14 C C9 FMP . . . D 2 8.199 12.313 41.11 1 21.73 ? C9 FMP 263 B 1 
HETATM 15 N N8 FMP . . . D 2 8.494 11.149 40.511 1 21.83 ? N8 FMP 263 B 1 
HETATM 16 N N7 FMP . . . D 2 9.653 10.789 40.99 1 19.98 ? N7 FMP 263 B 1 
HETATM 17 C C6 FMP . . . D 2 11.36 11.816 42.608 1 14.89 ? C6 FMP 263 B 1 
HETATM 18 N N6 FMP . . . D 2 12.326 10.92 42.548 1 15.87 ? N6 FMP 263 B 1 
HETATM 19 C C5 FMP . . . D 2 10.154 11.684 41.889 1 17.72 ? C5 FMP 263 B 1 
HETATM 20 C C4 FMP . . . D 2 9.267 12.67 41.889 1 18.66 ? C4 FMP 263 B 1 
HETATM 21 N N3 FMP . . . D 2 9.485 13.789 42.728 1 16.39 ? N3 FMP 263 B 1 
HETATM 22 C C2 FMP . . . D 2 10.56 13.787 43.447 1 15.51 ? C2 FMP 263 B 1 
HETATM 23 N N1 FMP . . . D 2 11.549 12.845 43.387 1 14.83 ? N1 FMP 263 B 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           226 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           23 
#