data_1PAL # _model_server_result.job_id SdDVD2F5ke8nzpivZg0ewA _model_server_result.datetime_utc '2024-11-05 01:17:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1pal # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":223}' # _entry.id 1PAL # _exptl.entry_id 1PAL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 18.038 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'AMMONIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1PAL _cell.length_a 59.5 _cell.length_b 59.63 _cell.length_c 26.24 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1PAL _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ACE 1 A ACE 0 1_555 A N SER 2 A SER 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.371 ? metalc ? metalc1 A OD1 ASP 51 A ASP 51 1_555 C CA CA . A CA 111 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.207 ? metalc ? metalc2 A OD1 ASP 53 A ASP 53 1_555 C CA CA . A CA 111 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.25 ? metalc ? metalc3 A OG SER 55 A SER 55 1_555 C CA CA . A CA 111 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.313 ? metalc ? metalc4 A O PHE 57 A PHE 57 1_555 C CA CA . A CA 111 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.303 ? metalc ? metalc5 A OE1 GLU 59 A GLU 59 1_555 C CA CA . A CA 111 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.416 ? metalc ? metalc6 A OE2 GLU 62 A GLU 62 1_555 C CA CA . A CA 111 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.522 ? metalc ? metalc7 A OE1 GLU 62 A GLU 62 1_555 C CA CA . A CA 111 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.496 ? metalc ? metalc8 A OD2 ASP 90 A ASP 90 1_555 B CA CA . A CA 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.349 ? metalc ? metalc9 A OD1 ASP 92 A ASP 92 1_555 B CA CA . A CA 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.367 ? metalc ? metalc10 A OD1 ASP 94 A ASP 94 1_555 B CA CA . A CA 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.197 ? metalc ? metalc11 A O MET 96 A MET 96 1_555 B CA CA . A CA 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.32 ? metalc ? metalc12 A OE2 GLU 101 A GLU 101 1_555 B CA CA . A CA 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.148 ? metalc ? metalc13 A OE1 GLU 101 A GLU 101 1_555 B CA CA . A CA 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.467 ? metalc ? metalc14 B CA CA . A CA 110 1_555 E O HOH . A HOH 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.472 ? # _chem_comp.formula 'H4 N 1' _chem_comp.formula_weight 18.038 _chem_comp.id NH4 _chem_comp.mon_nstd_flag . _chem_comp.name 'AMMONIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N HN1 NH4 sing 243 n n N HN2 NH4 sing 244 n n N HN3 NH4 sing 245 n n N HN4 NH4 sing 246 n n # _atom_sites.entry_id 1PAL _atom_sites.fract_transf_matrix[1][1] 0.016807 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01677 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.03811 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CA A 1 110 110 CA CA . C 2 CA A 1 111 111 CA CA . D 3 NH4 A 1 223 223 NH4 NH4 . E 4 HOH A 1 200 200 HOH HOH . E 4 HOH A 2 201 201 HOH HOH . E 4 HOH A 3 202 202 HOH HOH . E 4 HOH A 4 203 203 HOH HOH . E 4 HOH A 5 204 204 HOH HOH . E 4 HOH A 6 205 205 HOH HOH . E 4 HOH A 7 206 206 HOH HOH . E 4 HOH A 8 207 207 HOH HOH . E 4 HOH A 9 208 208 HOH HOH . E 4 HOH A 10 209 209 HOH HOH . E 4 HOH A 11 210 210 HOH HOH . E 4 HOH A 12 211 211 HOH HOH . E 4 HOH A 13 212 212 HOH HOH . E 4 HOH A 14 213 213 HOH HOH . E 4 HOH A 15 214 214 HOH HOH . E 4 HOH A 16 215 215 HOH HOH . E 4 HOH A 17 216 216 HOH HOH . E 4 HOH A 18 217 217 HOH HOH . E 4 HOH A 19 218 218 HOH HOH . E 4 HOH A 20 219 219 HOH HOH . E 4 HOH A 21 220 220 HOH HOH . E 4 HOH A 22 221 221 HOH HOH . E 4 HOH A 23 222 222 HOH HOH . E 4 HOH A 24 224 224 HOH HOH . E 4 HOH A 25 225 225 HOH HOH . E 4 HOH A 26 226 226 HOH HOH . E 4 HOH A 27 227 227 HOH HOH . E 4 HOH A 28 228 228 HOH HOH . E 4 HOH A 29 229 229 HOH HOH . E 4 HOH A 30 230 230 HOH HOH . E 4 HOH A 31 231 231 HOH HOH . E 4 HOH A 32 232 232 HOH HOH . E 4 HOH A 33 233 233 HOH HOH . E 4 HOH A 34 234 234 HOH HOH . E 4 HOH A 35 235 235 HOH HOH . E 4 HOH A 36 236 236 HOH HOH . E 4 HOH A 37 237 237 HOH HOH . E 4 HOH A 38 238 238 HOH HOH . E 4 HOH A 39 239 239 HOH HOH . E 4 HOH A 40 240 240 HOH HOH . E 4 HOH A 41 241 241 HOH HOH . E 4 HOH A 42 242 242 HOH HOH . E 4 HOH A 43 243 243 HOH HOH . E 4 HOH A 44 244 244 HOH HOH . E 4 HOH A 45 245 245 HOH HOH . E 4 HOH A 46 246 246 HOH HOH . E 4 HOH A 47 247 247 HOH HOH . E 4 HOH A 48 248 248 HOH HOH . E 4 HOH A 49 249 249 HOH HOH . E 4 HOH A 50 250 250 HOH HOH . E 4 HOH A 51 251 251 HOH HOH . E 4 HOH A 52 252 252 HOH HOH . E 4 HOH A 53 253 253 HOH HOH . E 4 HOH A 54 254 254 HOH HOH . E 4 HOH A 55 255 255 HOH HOH . E 4 HOH A 56 256 256 HOH HOH . E 4 HOH A 57 257 257 HOH HOH . E 4 HOH A 58 258 258 HOH HOH . E 4 HOH A 59 259 259 HOH HOH . E 4 HOH A 60 260 260 HOH HOH . E 4 HOH A 61 261 261 HOH HOH . E 4 HOH A 62 262 262 HOH HOH . E 4 HOH A 63 263 263 HOH HOH . E 4 HOH A 64 264 264 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol N _atom_site.label_atom_id N _atom_site.label_comp_id NH4 _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 3 _atom_site.Cartn_x -0.552 _atom_site.Cartn_y -2.291 _atom_site.Cartn_z 24.379 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 7.37 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id N _atom_site.auth_comp_id NH4 _atom_site.auth_seq_id 223 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 317 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 1 #