data_1PBK # _model_server_result.job_id aSr6_LwE6EY5tQ2yEHRQZg _model_server_result.datetime_utc '2024-12-15 21:32:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1pbk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":225}' # _entry.id 1PBK # _exptl.entry_id 1PBK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 914.172 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'RAPAMYCIN IMMUNOSUPPRESSANT DRUG' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1PBK _cell.length_a 86 _cell.length_b 86 _cell.length_c 55.6 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1PBK _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C51 H79 N O13' _chem_comp.formula_weight 914.172 _chem_comp.id RAP _chem_comp.mon_nstd_flag . _chem_comp.name 'RAPAMYCIN IMMUNOSUPPRESSANT DRUG' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 RAP sing 277 n n C1 O2 RAP doub 278 n n C1 C2 RAP sing 279 n n O1 C34 RAP sing 280 n n C2 C3 RAP sing 281 n n C2 N7 RAP sing 282 n n C2 H2 RAP sing 283 n n C3 C4 RAP sing 284 n n C3 H31A RAP sing 285 n n C3 H32 RAP sing 286 n n C4 C5 RAP sing 287 n n C4 H41 RAP sing 288 n n C4 H42 RAP sing 289 n n C5 C6 RAP sing 290 n n C5 H51 RAP sing 291 n n C5 H52 RAP sing 292 n n C6 N7 RAP sing 293 n n C6 H61 RAP sing 294 n n C6 H62 RAP sing 295 n n N7 C8 RAP sing 296 n n C8 O3 RAP doub 297 n n C8 C9 RAP sing 298 n n C9 O4 RAP doub 299 n n C9 C10 RAP sing 300 n n C10 O5 RAP sing 301 n n C10 O6 RAP sing 302 n n C10 C11 RAP sing 303 n n O5 C14 RAP sing 304 n n O6 HO6 RAP sing 305 n n C11 C12 RAP sing 306 n n C11 C43 RAP sing 307 n n C11 H11 RAP sing 308 n n C12 C13 RAP sing 309 n n C12 H121 RAP sing 310 n n C12 H122 RAP sing 311 n n C13 C14 RAP sing 312 n n C13 H131 RAP sing 313 n n C13 H132 RAP sing 314 n n C14 C15 RAP sing 315 n n C14 H14 RAP sing 316 n n C15 C16 RAP sing 317 n n C15 H151 RAP sing 318 n n C15 H152 RAP sing 319 n n C16 O7 RAP sing 320 n n C16 C17 RAP sing 321 n n C16 H16 RAP sing 322 n n O7 C50 RAP sing 323 n n C17 C18 RAP doub 324 e n C17 C44 RAP sing 325 n n C18 C19 RAP sing 326 n n C18 H18 RAP sing 327 n n C19 C20 RAP doub 328 e n C19 H19 RAP sing 329 n n C20 C21 RAP sing 330 n n C20 H20 RAP sing 331 n n C21 C22 RAP doub 332 e n C21 H21 RAP sing 333 n n C22 C23 RAP sing 334 n n C22 H22 RAP sing 335 n n C23 C24 RAP sing 336 n n C23 C45 RAP sing 337 n n C23 H23 RAP sing 338 n n C24 C25 RAP sing 339 n n C24 H241 RAP sing 340 n n C24 H242 RAP sing 341 n n C25 C26 RAP sing 342 n n C25 C46 RAP sing 343 n n C25 H25 RAP sing 344 n n C26 O8 RAP doub 345 n n C26 C27 RAP sing 346 n n C27 O9 RAP sing 347 n n C27 C28 RAP sing 348 n n C27 H27 RAP sing 349 n n O9 C51 RAP sing 350 n n C28 O10 RAP sing 351 n n C28 C29 RAP sing 352 n n C28 H28 RAP sing 353 n n O10 HO1 RAP sing 354 n n C29 C30 RAP doub 355 e n C29 C47 RAP sing 356 n n C30 C31 RAP sing 357 n n C30 H30 RAP sing 358 n n C31 C32 RAP sing 359 n n C31 C48 RAP sing 360 n n C31 H31 RAP sing 361 n n C32 O11 RAP doub 362 n n C32 C33 RAP sing 363 n n C33 C34 RAP sing 364 n n C33 H331 RAP sing 365 n n C33 H332 RAP sing 366 n n C34 C35 RAP sing 367 n n C34 H34 RAP sing 368 n n C35 C36 RAP sing 369 n n C35 C49 RAP sing 370 n n C35 H35 RAP sing 371 n n C36 C37 RAP sing 372 n n C36 H361 RAP sing 373 n n C36 H362 RAP sing 374 n n C37 C38 RAP sing 375 n n C37 C42 RAP sing 376 n n C37 H37 RAP sing 377 n n C38 C39 RAP sing 378 n n C38 H381 RAP sing 379 n n C38 H382 RAP sing 380 n n C39 O12 RAP sing 381 n n C39 C40 RAP sing 382 n n C39 H39 RAP sing 383 n n O12 C52 RAP sing 384 n n C40 O13 RAP sing 385 n n C40 C41 RAP sing 386 n n C40 H40 RAP sing 387 n n O13 HO3 RAP sing 388 n n C41 C42 RAP sing 389 n n C41 H411 RAP sing 390 n n C41 H412 RAP sing 391 n n C42 H421 RAP sing 392 n n C42 H422 RAP sing 393 n n C43 H431 RAP sing 394 n n C43 H432 RAP sing 395 n n C43 H433 RAP sing 396 n n C44 H441 RAP sing 397 n n C44 H442 RAP sing 398 n n C44 H443 RAP sing 399 n n C45 H451 RAP sing 400 n n C45 H452 RAP sing 401 n n C45 H453 RAP sing 402 n n C46 H461 RAP sing 403 n n C46 H462 RAP sing 404 n n C46 H463 RAP sing 405 n n C47 H471 RAP sing 406 n n C47 H472 RAP sing 407 n n C47 H473 RAP sing 408 n n C48 H481 RAP sing 409 n n C48 H482 RAP sing 410 n n C48 H483 RAP sing 411 n n C49 H491 RAP sing 412 n n C49 H492 RAP sing 413 n n C49 H493 RAP sing 414 n n C50 H501 RAP sing 415 n n C50 H502 RAP sing 416 n n C50 H503 RAP sing 417 n n C51 H511 RAP sing 418 n n C51 H512 RAP sing 419 n n C51 H513 RAP sing 420 n n C52 H521 RAP sing 421 n n C52 H522 RAP sing 422 n n C52 H523 RAP sing 423 n n # _atom_sites.entry_id 1PBK _atom_sites.fract_transf_matrix[1][1] 0.011628 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011628 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017986 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 RAP A 1 225 225 RAP RAP . C 3 HOH A 1 1 1 HOH HOH . C 3 HOH A 2 2 2 HOH HOH . C 3 HOH A 3 3 3 HOH HOH . C 3 HOH A 4 4 4 HOH HOH . C 3 HOH A 5 5 5 HOH HOH . C 3 HOH A 6 6 6 HOH HOH . C 3 HOH A 7 7 7 HOH HOH . C 3 HOH A 8 8 8 HOH HOH . C 3 HOH A 9 9 9 HOH HOH . C 3 HOH A 10 10 10 HOH HOH . C 3 HOH A 11 11 11 HOH HOH . C 3 HOH A 12 12 12 HOH HOH . C 3 HOH A 13 13 13 HOH HOH . C 3 HOH A 14 14 14 HOH HOH . C 3 HOH A 15 15 15 HOH HOH . C 3 HOH A 16 16 16 HOH HOH . C 3 HOH A 17 17 17 HOH HOH . C 3 HOH A 18 18 18 HOH HOH . C 3 HOH A 19 19 19 HOH HOH . C 3 HOH A 20 20 20 HOH HOH . C 3 HOH A 21 21 21 HOH HOH . C 3 HOH A 22 22 22 HOH HOH . C 3 HOH A 23 23 23 HOH HOH . C 3 HOH A 24 24 24 HOH HOH . C 3 HOH A 25 25 25 HOH HOH . C 3 HOH A 26 26 26 HOH HOH . C 3 HOH A 27 27 27 HOH HOH . C 3 HOH A 28 28 28 HOH HOH . C 3 HOH A 29 29 29 HOH HOH . C 3 HOH A 30 30 30 HOH HOH . C 3 HOH A 31 31 31 HOH HOH . C 3 HOH A 32 32 32 HOH HOH . C 3 HOH A 33 33 33 HOH HOH . C 3 HOH A 34 34 34 HOH HOH . C 3 HOH A 35 35 35 HOH HOH . C 3 HOH A 36 36 36 HOH HOH . C 3 HOH A 37 37 37 HOH HOH . C 3 HOH A 38 38 38 HOH HOH . C 3 HOH A 39 39 39 HOH HOH . C 3 HOH A 40 40 40 HOH HOH . C 3 HOH A 41 41 41 HOH HOH . C 3 HOH A 42 42 42 HOH HOH . C 3 HOH A 43 43 43 HOH HOH . C 3 HOH A 44 44 44 HOH HOH . C 3 HOH A 45 45 45 HOH HOH . C 3 HOH A 46 46 46 HOH HOH . C 3 HOH A 47 47 47 HOH HOH . C 3 HOH A 48 48 48 HOH HOH . C 3 HOH A 49 49 49 HOH HOH . C 3 HOH A 50 50 50 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 RAP . . . B 2 15.659 25.813 26.197 1 16.19 ? C1 RAP 225 A 1 HETATM 2 O O1 RAP . . . B 2 16.724 24.883 26.437 1 17.37 ? O1 RAP 225 A 1 HETATM 3 O O2 RAP . . . B 2 14.512 25.396 26.12 1 19.41 ? O2 RAP 225 A 1 HETATM 4 C C2 RAP . . . B 2 15.87 27.302 26.04 1 13.21 ? C2 RAP 225 A 1 HETATM 5 C C3 RAP . . . B 2 15.248 27.764 24.738 1 9.68 ? C3 RAP 225 A 1 HETATM 6 C C4 RAP . . . B 2 16.078 27.444 23.506 1 11.95 ? C4 RAP 225 A 1 HETATM 7 C C5 RAP . . . B 2 17.526 27.905 23.714 1 11.89 ? C5 RAP 225 A 1 HETATM 8 C C6 RAP . . . B 2 18.092 27.277 24.983 1 11.63 ? C6 RAP 225 A 1 HETATM 9 N N7 RAP . . . B 2 17.261 27.767 26.083 1 16.01 ? N7 RAP 225 A 1 HETATM 10 C C8 RAP . . . B 2 17.779 28.308 27.208 1 15.46 ? C8 RAP 225 A 1 HETATM 11 O O3 RAP . . . B 2 17.048 28.58 28.173 1 11.48 ? O3 RAP 225 A 1 HETATM 12 C C9 RAP . . . B 2 19.108 28.752 27.287 1 15.88 ? C9 RAP 225 A 1 HETATM 13 O O4 RAP . . . B 2 19.383 29.804 26.701 1 19.57 ? O4 RAP 225 A 1 HETATM 14 C C10 RAP . . . B 2 20.225 27.919 27.944 1 11.5 ? C10 RAP 225 A 1 HETATM 15 O O5 RAP . . . B 2 20.701 27.177 26.834 1 11.01 ? O5 RAP 225 A 1 HETATM 16 O O6 RAP . . . B 2 21.221 28.727 28.555 1 13.84 ? O6 RAP 225 A 1 HETATM 17 C C11 RAP . . . B 2 19.708 27.03 29.078 1 9.81 ? C11 RAP 225 A 1 HETATM 18 C C12 RAP . . . B 2 20.639 25.868 29.328 1 8.52 ? C12 RAP 225 A 1 HETATM 19 C C13 RAP . . . B 2 21.051 25.143 28.044 1 11.32 ? C13 RAP 225 A 1 HETATM 20 C C14 RAP . . . B 2 21.581 26.093 26.971 1 9.58 ? C14 RAP 225 A 1 HETATM 21 C C15 RAP . . . B 2 21.654 25.391 25.626 1 2.03 ? C15 RAP 225 A 1 HETATM 22 C C16 RAP . . . B 2 22.831 24.414 25.505 1 5.78 ? C16 RAP 225 A 1 HETATM 23 O O7 RAP . . . B 2 23.934 25.205 25.272 1 11.09 ? O7 RAP 225 A 1 HETATM 24 C C17 RAP . . . B 2 22.66 23.42 24.365 1 5.7 ? C17 RAP 225 A 1 HETATM 25 C C18 RAP . . . B 2 22.375 22.163 24.66 1 7.93 ? C18 RAP 225 A 1 HETATM 26 C C19 RAP . . . B 2 22.14 21.095 23.679 1 9.59 ? C19 RAP 225 A 1 HETATM 27 C C20 RAP . . . B 2 21.868 19.856 24.078 1 14.27 ? C20 RAP 225 A 1 HETATM 28 C C21 RAP . . . B 2 21.524 18.864 23.058 1 14.44 ? C21 RAP 225 A 1 HETATM 29 C C22 RAP . . . B 2 21.181 17.633 23.373 1 15.05 ? C22 RAP 225 A 1 HETATM 30 C C23 RAP . . . B 2 20.716 16.574 22.374 1 14.12 ? C23 RAP 225 A 1 HETATM 31 C C24 RAP . . . B 2 19.287 16.211 22.715 1 15.22 ? C24 RAP 225 A 1 HETATM 32 C C25 RAP . . . B 2 18.266 17.32 22.738 1 14.46 ? C25 RAP 225 A 1 HETATM 33 C C26 RAP . . . B 2 16.995 16.781 23.38 1 16 ? C26 RAP 225 A 1 HETATM 34 O O8 RAP . . . B 2 16.207 16.093 22.732 1 13.86 ? O8 RAP 225 A 1 HETATM 35 C C27 RAP . . . B 2 16.755 17.076 24.858 1 19.08 ? C27 RAP 225 A 1 HETATM 36 O O9 RAP . . . B 2 15.67 16.305 25.23 1 18.32 ? O9 RAP 225 A 1 HETATM 37 C C28 RAP . . . B 2 16.328 18.526 25.192 1 18.38 ? C28 RAP 225 A 1 HETATM 38 O O10 RAP . . . B 2 15.206 18.811 24.36 1 24.59 ? O10 RAP 225 A 1 HETATM 39 C C29 RAP . . . B 2 17.421 19.6 25.015 1 17.52 ? C29 RAP 225 A 1 HETATM 40 C C30 RAP . . . B 2 17.378 20.506 24.027 1 11.85 ? C30 RAP 225 A 1 HETATM 41 C C31 RAP . . . B 2 18.352 21.652 23.817 1 11.55 ? C31 RAP 225 A 1 HETATM 42 C C32 RAP . . . B 2 17.839 22.933 24.501 1 10.62 ? C32 RAP 225 A 1 HETATM 43 O O11 RAP . . . B 2 17.422 23.91 23.872 1 17.3 ? O11 RAP 225 A 1 HETATM 44 C C33 RAP . . . B 2 17.862 22.986 26.015 1 9.55 ? C33 RAP 225 A 1 HETATM 45 C C34 RAP . . . B 2 16.579 23.518 26.602 1 9.61 ? C34 RAP 225 A 1 HETATM 46 C C35 RAP . . . B 2 16.365 23.288 28.112 1 9.58 ? C35 RAP 225 A 1 HETATM 47 C C36 RAP . . . B 2 15.867 21.895 28.426 1 17.2 ? C36 RAP 225 A 1 HETATM 48 C C37 RAP . . . B 2 14.412 21.504 28.312 1 22.8 ? C37 RAP 225 A 1 HETATM 49 C C38 RAP . . . B 2 14.274 19.986 28.269 1 24.64 ? C38 RAP 225 A 1 HETATM 50 C C39 RAP . . . B 2 12.83 19.543 28.034 1 30.51 ? C39 RAP 225 A 1 HETATM 51 O O12 RAP . . . B 2 12.732 18.179 28.168 1 32.12 ? O12 RAP 225 A 1 HETATM 52 C C40 RAP . . . B 2 11.832 20.128 29.043 1 30.2 ? C40 RAP 225 A 1 HETATM 53 O O13 RAP . . . B 2 10.571 19.9 28.418 1 32.51 ? O13 RAP 225 A 1 HETATM 54 C C41 RAP . . . B 2 12.055 21.632 29.321 1 21.99 ? C41 RAP 225 A 1 HETATM 55 C C42 RAP . . . B 2 13.535 22.038 29.458 1 25.83 ? C42 RAP 225 A 1 HETATM 56 C C43 RAP . . . B 2 19.492 27.787 30.388 1 9.92 ? C43 RAP 225 A 1 HETATM 57 C C44 RAP . . . B 2 22.849 23.951 22.937 1 2.15 ? C44 RAP 225 A 1 HETATM 58 C C45 RAP . . . B 2 21.492 15.295 22.532 1 12.52 ? C45 RAP 225 A 1 HETATM 59 C C46 RAP . . . B 2 17.96 17.853 21.337 1 13.31 ? C46 RAP 225 A 1 HETATM 60 C C47 RAP . . . B 2 18.538 19.512 26.05 1 12.23 ? C47 RAP 225 A 1 HETATM 61 C C48 RAP . . . B 2 18.499 21.89 22.326 1 2 ? C48 RAP 225 A 1 HETATM 62 C C49 RAP . . . B 2 17.638 23.487 28.904 1 7.81 ? C49 RAP 225 A 1 HETATM 63 C C50 RAP . . . B 2 25.148 24.741 25.722 1 15.75 ? C50 RAP 225 A 1 HETATM 64 C C51 RAP . . . B 2 16.068 15.351 26.125 1 22.95 ? C51 RAP 225 A 1 HETATM 65 C C52 RAP . . . B 2 12.625 17.526 26.949 1 36.91 ? C52 RAP 225 A 1 HETATM 66 H HO6 RAP . . . B 2 21.169 29.599 28.144 1 15 ? HO6 RAP 225 A 1 HETATM 67 H HO1 RAP . . . B 2 14.693 19.505 24.789 1 15 ? HO1 RAP 225 A 1 HETATM 68 H HO3 RAP . . . B 2 10.659 19.738 27.465 1 15 ? HO3 RAP 225 A 1 # _model_server_stats.io_time_ms 49 _model_server_stats.parse_time_ms 23 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 316 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 68 #