data_1PBR # _model_server_result.job_id MbMZtcTu03ID4KF4ThVloQ _model_server_result.datetime_utc '2024-12-06 07:15:44' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1pbr # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":101}' # _entry.id 1PBR # _exptl.entry_id 1PBR _exptl.method 'SOLUTION NMR' # _entity.details ? _entity.formula_weight 179.171 _entity.id 3 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-amino-2-deoxy-alpha-D-glucopyranose _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1PBR _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1PBR _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 IDG _pdbx_entity_branch_link.comp_id_2 BDR _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O3 _pdbx_entity_branch_link.leaving_atom_id_2 HO3 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B BDR 1 B 1 BDR ? 30 PA3 2 n B IDG 2 B 2 IDG ? 31 PA4 # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 C C1 PA1 . A PA1 101 1_555 D O4 CYY . A CYY 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.45 ? covale ? covale2 D O5 CYY . A CYY 102 1_555 B C1 BDR . B BDR 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.464 ? covale ? covale3 B O3 BDR . B BDR 1 1_555 B C1 IDG . B IDG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.449 ? hydrog WATSON-CRICK hydrog1 A N1 G 1 A G 1 1_555 A N3 C 27 A C 27 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 A N2 G 1 A G 1 1_555 A O2 C 27 A C 27 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 A O6 G 1 A G 1 1_555 A N4 C 27 A C 27 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 A N1 G 2 A G 2 1_555 A N3 C 26 A C 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 A N2 G 2 A G 2 1_555 A O2 C 26 A C 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 A O6 G 2 A G 2 1_555 A N4 C 26 A C 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 A N3 C 3 A C 3 1_555 A N1 G 25 A G 25 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 A N4 C 3 A C 3 1_555 A O6 G 25 A G 25 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 A O2 C 3 A C 3 1_555 A N2 G 25 A G 25 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 A N1 G 4 A G 4 1_555 A N3 C 24 A C 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 A N2 G 4 A G 4 1_555 A O2 C 24 A C 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 A O6 G 4 A G 4 1_555 A N4 C 24 A C 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'U-C MISPAIR' hydrog13 A N3 U 5 A U 5 1_555 A O2 C 24 A C 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 A N3 C 6 A C 6 1_555 A N1 G 22 A G 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 A N4 C 6 A C 6 1_555 A O6 G 22 A G 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog16 A O2 C 6 A C 6 1_555 A N2 G 22 A G 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'C-U MISPAIR' hydrog17 A N4 C 6 A C 6 1_555 A O4 U 23 A U 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog18 A N3 C 8 A C 8 1_555 A N1 G 19 A G 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog19 A N4 C 8 A C 8 1_555 A O6 G 19 A G 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog20 A O2 C 8 A C 8 1_555 A N2 G 19 A G 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'C-A MISPAIR' hydrog21 A O2 C 8 A C 8 1_555 A N6 A 21 A A 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog22 A N1 A 9 A A 9 1_555 A N3 U 18 A U 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog23 A N6 A 9 A A 9 1_555 A O4 U 18 A U 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog24 A N3 C 10 A C 10 1_555 A N1 G 17 A G 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog25 A N4 C 10 A C 10 1_555 A O6 G 17 A G 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog26 A O2 C 10 A C 10 1_555 A N2 G 17 A G 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog27 A N3 C 11 A C 11 1_555 A N1 G 16 A G 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog28 A N4 C 11 A C 11 1_555 A O6 G 16 A G 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog29 A O2 C 11 A C 11 1_555 A N2 G 16 A G 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'U-G MISPAIR' hydrog30 A O2 U 12 A U 12 1_555 A N1 G 15 A G 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'C6 H13 N O5' _chem_comp.formula_weight 179.171 _chem_comp.id PA1 _chem_comp.mon_nstd_flag . _chem_comp.name 2-amino-2-deoxy-alpha-D-glucopyranose _chem_comp.type 'd-saccharide, alpha linking' _chem_comp.pdbx_synonyms alpah-D-glucosamine;2-amino-2-deoxy-alpha-D-glucose;2-amino-2-deoxy-D-glucose;2-amino-2-deoxy-glucose # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 PA1 sing 187 n n C1 C2 PA1 sing 188 n n C1 O5 PA1 sing 189 n n C1 H1 PA1 sing 190 n n O1 HO1 PA1 sing 191 n n C2 N2 PA1 sing 192 n n C2 C3 PA1 sing 193 n n C2 H2 PA1 sing 194 n n N2 HN21 PA1 sing 195 n n N2 HN22 PA1 sing 196 n n C3 O3 PA1 sing 197 n n C3 C4 PA1 sing 198 n n C3 H3 PA1 sing 199 n n O3 HO3 PA1 sing 200 n n C4 O4 PA1 sing 201 n n C4 C5 PA1 sing 202 n n C4 H4 PA1 sing 203 n n O4 HO4 PA1 sing 204 n n C5 O5 PA1 sing 205 n n C5 C6 PA1 sing 206 n n C5 H5 PA1 sing 207 n n C6 O6 PA1 sing 208 n n C6 H61 PA1 sing 209 n n C6 H62 PA1 sing 210 n n O6 HO6 PA1 sing 211 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version PA1 DGlcpNa 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 PA1 a-D-glucopyranosamine 'COMMON NAME' GMML 1 PA1 a-D-GlcpN 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 PA1 GlcN 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 1PBR _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 PA1 A 1 101 28 PA1 PA1 . D 4 CYY A 1 102 29 CYY PA2 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PA1 . . . C 3 1.98 -0.879 43.999 1 0 ? C1 PA1 101 A 1 HETATM 2 C C2 PA1 . . . C 3 3.316 -0.407 44.685 1 0 ? C2 PA1 101 A 1 HETATM 3 N N2 PA1 . . . C 3 4.453 -1.352 44.535 1 0 ? N2 PA1 101 A 1 HETATM 4 C C3 PA1 . . . C 3 3.131 -0.192 46.199 1 0 ? C3 PA1 101 A 1 HETATM 5 O O3 PA1 . . . C 3 4.258 0.481 46.756 1 0 ? O3 PA1 101 A 1 HETATM 6 C C4 PA1 . . . C 3 1.858 0.617 46.49 1 0 ? C4 PA1 101 A 1 HETATM 7 O O4 PA1 . . . C 3 1.727 0.843 47.89 1 0 ? O4 PA1 101 A 1 HETATM 8 C C5 PA1 . . . C 3 0.618 -0.077 45.884 1 0 ? C5 PA1 101 A 1 HETATM 9 O O5 PA1 . . . C 3 0.822 -0.127 44.456 1 0 ? O5 PA1 101 A 1 HETATM 10 C C6 PA1 . . . C 3 -0.699 0.652 46.145 1 0 ? C6 PA1 101 A 1 HETATM 11 O O6 PA1 . . . C 3 -1.035 0.63 47.526 1 0 ? O6 PA1 101 A 1 HETATM 12 H H1 PA1 . . . C 3 2.009 -0.659 42.921 1 0 ? H1 PA1 101 A 1 HETATM 13 H H2 PA1 . . . C 3 3.604 0.559 44.233 1 0 ? H2 PA1 101 A 1 HETATM 14 H HN21 PA1 . . . C 3 5.282 -0.986 45.017 1 0 ? HN21 PA1 101 A 1 HETATM 15 H HN22 PA1 . . . C 3 4.235 -2.242 44.998 1 0 ? HN22 PA1 101 A 1 HETATM 16 H H3 PA1 . . . C 3 3.044 -1.188 46.649 1 0 ? H3 PA1 101 A 1 HETATM 17 H HO3 PA1 . . . C 3 4.298 1.336 46.32 1 0 ? HO3 PA1 101 A 1 HETATM 18 H H4 PA1 . . . C 3 1.966 1.564 45.945 1 0 ? H4 PA1 101 A 1 HETATM 19 H HO4 PA1 . . . C 3 1.644 -0.026 48.291 1 0 ? HO4 PA1 101 A 1 HETATM 20 H H5 PA1 . . . C 3 0.519 -1.112 46.244 1 0 ? H5 PA1 101 A 1 HETATM 21 H H61 PA1 . . . C 3 -1.503 0.179 45.555 1 0 ? H61 PA1 101 A 1 HETATM 22 H H62 PA1 . . . C 3 -0.639 1.691 45.797 1 0 ? H62 PA1 101 A 1 HETATM 23 H HO6 PA1 . . . C 3 -1.106 -0.297 47.767 1 0 ? HO6 PA1 101 A 1 # _model_server_stats.io_time_ms 4 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 211 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 23 #