data_1PBX
#
_model_server_result.job_id            T9dJEDb2G3rxqaJOQL0xAQ 
_model_server_result.datetime_utc      '2024-10-23 21:22:14' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1pbx 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":144}' 
#
_entry.id    1PBX 
#
_exptl.entry_id    1PBX 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              616.487 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PROTOPORPHYRIN IX CONTAINING FE' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          97.16 
_cell.angle_gamma         90 
_cell.entry_id            1PBX 
_cell.length_a            91.38 
_cell.length_b            88.54 
_cell.length_c            55.34 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1PBX 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 C N N 
? 3 E N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C ACE 1 A ACE 0 1_555 A N SER 2 A SER 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.341 ? 
metalc ? metalc1 A NE2 HIS 89 A HIS 88 1_555 C FE HEM . A HEM 144 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.141 ? 
metalc ? metalc2 C FE HEM . A HEM 144 1_555 D C CMO . A CMO 145 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.654 ? 
metalc ? metalc3 C FE HEM . A HEM 144 1_555 D O CMO . A CMO 145 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.694 ? 
metalc ? metalc4 B NE2 HIS 92 B HIS 92 1_555 E FE HEM . B HEM 148 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.152 ? 
metalc ? metalc5 E FE HEM . B HEM 148 1_555 F C CMO . B CMO 149 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.942 ? 
metalc ? metalc6 E FE HEM . B HEM 148 1_555 F O CMO . B CMO 149 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.78 ? 
#
_chem_comp.formula           'C34 H32 Fe N4 O4' 
_chem_comp.formula_weight    616.487 
_chem_comp.id                HEM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PROTOPORPHYRIN IX CONTAINING FE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     HEME 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CHA C1A HEM sing 136 n n 
CHA C4D HEM doub 137 n n 
CHA HHA HEM sing 138 n n 
CHB C4A HEM sing 139 n n 
CHB C1B HEM doub 140 n n 
CHB HHB HEM sing 141 n n 
CHC C4B HEM sing 142 n n 
CHC C1C HEM doub 143 n n 
CHC HHC HEM sing 144 n n 
CHD C4C HEM doub 145 n n 
CHD C1D HEM sing 146 n n 
CHD HHD HEM sing 147 n n 
C1A C2A HEM doub 148 n y 
C1A NA HEM sing 149 n y 
C2A C3A HEM sing 150 n y 
C2A CAA HEM sing 151 n n 
C3A C4A HEM doub 152 n y 
C3A CMA HEM sing 153 n n 
C4A NA HEM sing 154 n y 
CMA HMA HEM sing 155 n n 
CMA HMAA HEM sing 156 n n 
CMA HMAB HEM sing 157 n n 
CAA CBA HEM sing 158 n n 
CAA HAA HEM sing 159 n n 
CAA HAAA HEM sing 160 n n 
CBA CGA HEM sing 161 n n 
CBA HBA HEM sing 162 n n 
CBA HBAA HEM sing 163 n n 
CGA O1A HEM doub 164 n n 
CGA O2A HEM sing 165 n n 
C1B C2B HEM sing 166 n n 
C1B NB HEM sing 167 n n 
C2B C3B HEM doub 168 n n 
C2B CMB HEM sing 169 n n 
C3B C4B HEM sing 170 n n 
C3B CAB HEM sing 171 n n 
C4B NB HEM doub 172 n n 
CMB HMB HEM sing 173 n n 
CMB HMBA HEM sing 174 n n 
CMB HMBB HEM sing 175 n n 
CAB CBB HEM doub 176 n n 
CAB HAB HEM sing 177 n n 
CBB HBB HEM sing 178 n n 
CBB HBBA HEM sing 179 n n 
C1C C2C HEM sing 180 n y 
C1C NC HEM sing 181 n y 
C2C C3C HEM doub 182 n y 
C2C CMC HEM sing 183 n n 
C3C C4C HEM sing 184 n y 
C3C CAC HEM sing 185 n n 
C4C NC HEM sing 186 n y 
CMC HMC HEM sing 187 n n 
CMC HMCA HEM sing 188 n n 
CMC HMCB HEM sing 189 n n 
CAC CBC HEM doub 190 n n 
CAC HAC HEM sing 191 n n 
CBC HBC HEM sing 192 n n 
CBC HBCA HEM sing 193 n n 
C1D C2D HEM sing 194 n n 
C1D ND HEM doub 195 n n 
C2D C3D HEM doub 196 n n 
C2D CMD HEM sing 197 n n 
C3D C4D HEM sing 198 n n 
C3D CAD HEM sing 199 n n 
C4D ND HEM sing 200 n n 
CMD HMD HEM sing 201 n n 
CMD HMDA HEM sing 202 n n 
CMD HMDB HEM sing 203 n n 
CAD CBD HEM sing 204 n n 
CAD HAD HEM sing 205 n n 
CAD HADA HEM sing 206 n n 
CBD CGD HEM sing 207 n n 
CBD HBD HEM sing 208 n n 
CBD HBDA HEM sing 209 n n 
CGD O1D HEM doub 210 n n 
CGD O2D HEM sing 211 n n 
O2A H2A HEM sing 212 n n 
O2D H2D HEM sing 213 n n 
FE NA HEM sing 214 n n 
FE NB HEM sing 215 n n 
FE NC HEM sing 216 n n 
FE ND HEM sing 217 n n 
#
_atom_sites.entry_id                     1PBX 
_atom_sites.fract_transf_matrix[1][1]    0.010943 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.001375 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011294 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.018212 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 HEM A 1 144 144 HEM HEM . 
D 4 CMO A 1 145 144 CMO HEM . 
E 3 HEM B 1 148 148 HEM HEM . 
F 4 CMO B 1 149 148 CMO HEM . 
G 5 HOH A 1 450 450 HOH HOH . 
G 5 HOH A 2 451 451 HOH HOH . 
G 5 HOH A 3 455 455 HOH HOH . 
G 5 HOH A 4 457 457 HOH HOH . 
G 5 HOH A 5 458 458 HOH HOH . 
G 5 HOH A 6 459 459 HOH HOH . 
G 5 HOH A 7 463 463 HOH HOH . 
G 5 HOH A 8 469 469 HOH HOH . 
G 5 HOH A 9 470 470 HOH HOH . 
G 5 HOH A 10 480 480 HOH HOH . 
G 5 HOH A 11 481 481 HOH HOH . 
G 5 HOH A 12 482 482 HOH HOH . 
G 5 HOH A 13 484 484 HOH HOH . 
G 5 HOH A 14 485 485 HOH HOH . 
G 5 HOH A 15 487 487 HOH HOH . 
H 5 HOH B 1 452 452 HOH HOH . 
H 5 HOH B 2 453 453 HOH HOH . 
H 5 HOH B 3 454 454 HOH HOH . 
H 5 HOH B 4 456 456 HOH HOH . 
H 5 HOH B 5 461 461 HOH HOH . 
H 5 HOH B 6 466 466 HOH HOH . 
H 5 HOH B 7 467 467 HOH HOH . 
H 5 HOH B 8 468 468 HOH HOH . 
H 5 HOH B 9 471 471 HOH HOH . 
H 5 HOH B 10 472 472 HOH HOH . 
H 5 HOH B 11 483 483 HOH HOH . 
H 5 HOH B 12 486 486 HOH HOH . 
H 5 HOH B 13 488 488 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CHA HEM . . . C 3 10.731 -8.749 18.379 1 26.06 ? CHA HEM 144 A 1 
HETATM 2 C CHB HEM . . . C 3 11.902 -10.457 13.967 1 25.14 ? CHB HEM 144 A 1 
HETATM 3 C CHC HEM . . . C 3 9.705 -6.615 11.994 1 17.13 ? CHC HEM 144 A 1 
HETATM 4 C CHD HEM . . . C 3 8.805 -4.755 16.426 1 17.97 ? CHD HEM 144 A 1 
HETATM 5 C C1A HEM . . . C 3 11.234 -9.571 17.355 1 30.02 ? C1A HEM 144 A 1 
HETATM 6 C C2A HEM . . . C 3 11.996 -10.798 17.509 1 30.98 ? C2A HEM 144 A 1 
HETATM 7 C C3A HEM . . . C 3 12.349 -11.227 16.286 1 28.43 ? C3A HEM 144 A 1 
HETATM 8 C C4A HEM . . . C 3 11.794 -10.305 15.341 1 27.86 ? C4A HEM 144 A 1 
HETATM 9 C CMA HEM . . . C 3 13.168 -12.528 15.996 1 28.02 ? CMA HEM 144 A 1 
HETATM 10 C CAA HEM . . . C 3 12.38 -11.535 18.757 1 36.04 ? CAA HEM 144 A 1 
HETATM 11 C CBA HEM . . . C 3 12.467 -11.248 20.191 1 46.09 ? CBA HEM 144 A 1 
HETATM 12 C CGA HEM . . . C 3 11.675 -12.334 20.969 1 50.78 ? CGA HEM 144 A 1 
HETATM 13 O O1A HEM . . . C 3 11.036 -11.739 21.924 1 54.32 ? O1A HEM 144 A 1 
HETATM 14 O O2A HEM . . . C 3 11.775 -13.501 20.485 1 48.93 ? O2A HEM 144 A 1 
HETATM 15 C C1B HEM . . . C 3 11.324 -9.565 13.09 1 23.95 ? C1B HEM 144 A 1 
HETATM 16 C C2B HEM . . . C 3 11.48 -9.752 11.645 1 22.54 ? C2B HEM 144 A 1 
HETATM 17 C C3B HEM . . . C 3 10.901 -8.666 11.095 1 21.91 ? C3B HEM 144 A 1 
HETATM 18 C C4B HEM . . . C 3 10.344 -7.808 12.091 1 19.47 ? C4B HEM 144 A 1 
HETATM 19 C CMB HEM . . . C 3 12.194 -10.946 10.989 1 19.01 ? CMB HEM 144 A 1 
HETATM 20 C CAB HEM . . . C 3 10.849 -8.538 9.573 1 25.05 ? CAB HEM 144 A 1 
HETATM 21 C CBB HEM . . . C 3 10.611 -7.319 9.124 1 31.77 ? CBB HEM 144 A 1 
HETATM 22 C C1C HEM . . . C 3 9.282 -5.735 13.001 1 17.19 ? C1C HEM 144 A 1 
HETATM 23 C C2C HEM . . . C 3 8.856 -4.363 12.863 1 17.45 ? C2C HEM 144 A 1 
HETATM 24 C C3C HEM . . . C 3 8.691 -3.836 14.071 1 17.76 ? C3C HEM 144 A 1 
HETATM 25 C C4C HEM . . . C 3 8.968 -4.879 15.048 1 18.62 ? C4C HEM 144 A 1 
HETATM 26 C CMC HEM . . . C 3 8.762 -3.692 11.475 1 16.28 ? CMC HEM 144 A 1 
HETATM 27 C CAC HEM . . . C 3 8.296 -2.439 14.557 1 19.16 ? CAC HEM 144 A 1 
HETATM 28 C CBC HEM . . . C 3 8.096 -1.391 13.744 1 22.32 ? CBC HEM 144 A 1 
HETATM 29 C C1D HEM . . . C 3 9.224 -5.689 17.343 1 20.84 ? C1D HEM 144 A 1 
HETATM 30 C C2D HEM . . . C 3 9.264 -5.5 18.771 1 21.22 ? C2D HEM 144 A 1 
HETATM 31 C C3D HEM . . . C 3 9.794 -6.598 19.306 1 22.81 ? C3D HEM 144 A 1 
HETATM 32 C C4D HEM . . . C 3 10.168 -7.493 18.235 1 22.51 ? C4D HEM 144 A 1 
HETATM 33 C CMD HEM . . . C 3 8.746 -4.217 19.503 1 20.28 ? CMD HEM 144 A 1 
HETATM 34 C CAD HEM . . . C 3 10.036 -6.896 20.815 1 23.63 ? CAD HEM 144 A 1 
HETATM 35 C CBD HEM . . . C 3 11.423 -6.523 21.332 1 27.57 ? CBD HEM 144 A 1 
HETATM 36 C CGD HEM . . . C 3 11.396 -6.327 22.814 1 33.6 ? CGD HEM 144 A 1 
HETATM 37 O O1D HEM . . . C 3 10.399 -6.473 23.527 1 35.01 ? O1D HEM 144 A 1 
HETATM 38 O O2D HEM . . . C 3 12.439 -5.977 23.445 1 40.04 ? O2D HEM 144 A 1 
HETATM 39 N NA HEM . . . C 3 11.1 -9.272 16.003 1 28.54 ? NA HEM 144 A 1 
HETATM 40 N NB HEM . . . C 3 10.609 -8.374 13.342 1 22.43 ? NB HEM 144 A 1 
HETATM 41 N NC HEM . . . C 3 9.347 -6.014 14.351 1 19.17 ? NC HEM 144 A 1 
HETATM 42 N ND HEM . . . C 3 9.791 -6.936 17.033 1 22.97 ? ND HEM 144 A 1 
HETATM 43 FE FE HEM . . . C 3 10.29 -7.592 15.182 1 23.88 ? FE HEM 144 A 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           324 
_model_server_stats.encode_time_ms          8 
_model_server_stats.element_count           43 
#