data_1PD0 # _model_server_result.job_id ASVd92oZQKUQvBUiA8zzpA _model_server_result.datetime_utc '2025-07-08 02:34:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1pd0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":950}' # _entry.id 1PD0 # _exptl.entry_id 1PD0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1PD0 _cell.length_a 94.527 _cell.length_b 94.527 _cell.length_c 197.935 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1PD0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 115 A CYS 231 1_555 C ZN ZN . A ZN 950 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.487 ? metalc ? metalc2 A SG CYS 118 A CYS 234 1_555 C ZN ZN . A ZN 950 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.372 ? metalc ? metalc3 A SG CYS 137 A CYS 253 1_555 C ZN ZN . A ZN 950 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.391 ? metalc ? metalc4 A SG CYS 140 A CYS 256 1_555 C ZN ZN . A ZN 950 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.309 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1PD0 _atom_sites.fract_transf_matrix[1][1] 0.010579 _atom_sites.fract_transf_matrix[1][2] 0.006108 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012216 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005052 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 ZN A 1 950 950 ZN ZN . D 4 HOH A 1 951 3 HOH TIP . D 4 HOH A 2 952 6 HOH TIP . D 4 HOH A 3 953 8 HOH TIP . D 4 HOH A 4 954 9 HOH TIP . D 4 HOH A 5 955 10 HOH TIP . D 4 HOH A 6 956 12 HOH TIP . D 4 HOH A 7 957 13 HOH TIP . D 4 HOH A 8 958 14 HOH TIP . D 4 HOH A 9 959 15 HOH TIP . D 4 HOH A 10 960 16 HOH TIP . D 4 HOH A 11 961 17 HOH TIP . D 4 HOH A 12 962 18 HOH TIP . D 4 HOH A 13 963 19 HOH TIP . D 4 HOH A 14 964 20 HOH TIP . D 4 HOH A 15 965 21 HOH TIP . D 4 HOH A 16 966 23 HOH TIP . D 4 HOH A 17 967 24 HOH TIP . D 4 HOH A 18 968 25 HOH TIP . D 4 HOH A 19 969 26 HOH TIP . D 4 HOH A 20 970 27 HOH TIP . D 4 HOH A 21 971 29 HOH TIP . D 4 HOH A 22 972 30 HOH TIP . D 4 HOH A 23 973 31 HOH TIP . D 4 HOH A 24 974 32 HOH TIP . D 4 HOH A 25 975 33 HOH TIP . D 4 HOH A 26 976 34 HOH TIP . D 4 HOH A 27 977 35 HOH TIP . D 4 HOH A 28 978 37 HOH TIP . D 4 HOH A 29 979 38 HOH TIP . D 4 HOH A 30 980 39 HOH TIP . D 4 HOH A 31 981 40 HOH TIP . D 4 HOH A 32 982 41 HOH TIP . D 4 HOH A 33 983 42 HOH TIP . D 4 HOH A 34 984 43 HOH TIP . D 4 HOH A 35 985 45 HOH TIP . D 4 HOH A 36 986 46 HOH TIP . D 4 HOH A 37 987 47 HOH TIP . D 4 HOH A 38 988 48 HOH TIP . D 4 HOH A 39 989 50 HOH TIP . D 4 HOH A 40 990 51 HOH TIP . D 4 HOH A 41 991 52 HOH TIP . D 4 HOH A 42 992 53 HOH TIP . D 4 HOH A 43 993 54 HOH TIP . D 4 HOH A 44 994 55 HOH TIP . D 4 HOH A 45 995 56 HOH TIP . D 4 HOH A 46 996 57 HOH TIP . D 4 HOH A 47 997 58 HOH TIP . D 4 HOH A 48 998 59 HOH TIP . D 4 HOH A 49 999 60 HOH TIP . D 4 HOH A 50 1000 61 HOH TIP . D 4 HOH A 51 1001 63 HOH TIP . D 4 HOH A 52 1002 65 HOH TIP . D 4 HOH A 53 1003 66 HOH TIP . D 4 HOH A 54 1004 67 HOH TIP . D 4 HOH A 55 1005 69 HOH TIP . D 4 HOH A 56 1006 70 HOH TIP . D 4 HOH A 57 1007 71 HOH TIP . D 4 HOH A 58 1008 72 HOH TIP . D 4 HOH A 59 1009 73 HOH TIP . D 4 HOH A 60 1010 74 HOH TIP . D 4 HOH A 61 1011 75 HOH TIP . D 4 HOH A 62 1012 76 HOH TIP . D 4 HOH A 63 1013 77 HOH TIP . D 4 HOH A 64 1014 79 HOH TIP . D 4 HOH A 65 1015 80 HOH TIP . D 4 HOH A 66 1016 81 HOH TIP . D 4 HOH A 67 1017 82 HOH TIP . D 4 HOH A 68 1018 83 HOH TIP . D 4 HOH A 69 1019 84 HOH TIP . D 4 HOH A 70 1020 85 HOH TIP . D 4 HOH A 71 1021 86 HOH TIP . D 4 HOH A 72 1022 87 HOH TIP . D 4 HOH A 73 1023 90 HOH TIP . D 4 HOH A 74 1024 91 HOH TIP . D 4 HOH A 75 1025 92 HOH TIP . D 4 HOH A 76 1026 93 HOH TIP . D 4 HOH A 77 1027 94 HOH TIP . D 4 HOH A 78 1028 95 HOH TIP . D 4 HOH A 79 1029 96 HOH TIP . D 4 HOH A 80 1030 97 HOH TIP . D 4 HOH A 81 1031 98 HOH TIP . D 4 HOH A 82 1032 99 HOH TIP . D 4 HOH A 83 1033 101 HOH TIP . D 4 HOH A 84 1034 102 HOH TIP . D 4 HOH A 85 1035 103 HOH TIP . D 4 HOH A 86 1036 104 HOH TIP . D 4 HOH A 87 1037 105 HOH TIP . D 4 HOH A 88 1038 107 HOH TIP . D 4 HOH A 89 1039 109 HOH TIP . D 4 HOH A 90 1040 110 HOH TIP . D 4 HOH A 91 1041 111 HOH TIP . D 4 HOH A 92 1042 112 HOH TIP . D 4 HOH A 93 1043 113 HOH TIP . D 4 HOH A 94 1044 114 HOH TIP . D 4 HOH A 95 1045 115 HOH TIP . D 4 HOH A 96 1046 116 HOH TIP . D 4 HOH A 97 1047 117 HOH TIP . D 4 HOH A 98 1048 118 HOH TIP . D 4 HOH A 99 1049 120 HOH TIP . D 4 HOH A 100 1050 121 HOH TIP . D 4 HOH A 101 1051 122 HOH TIP . D 4 HOH A 102 1052 123 HOH TIP . D 4 HOH A 103 1053 124 HOH TIP . D 4 HOH A 104 1054 125 HOH TIP . D 4 HOH A 105 1055 127 HOH TIP . D 4 HOH A 106 1056 128 HOH TIP . D 4 HOH A 107 1057 131 HOH TIP . D 4 HOH A 108 1058 132 HOH TIP . D 4 HOH A 109 1059 133 HOH TIP . D 4 HOH A 110 1060 136 HOH TIP . D 4 HOH A 111 1061 137 HOH TIP . D 4 HOH A 112 1062 138 HOH TIP . D 4 HOH A 113 1063 139 HOH TIP . D 4 HOH A 114 1064 140 HOH TIP . D 4 HOH A 115 1065 141 HOH TIP . D 4 HOH A 116 1066 142 HOH TIP . D 4 HOH A 117 1067 143 HOH TIP . D 4 HOH A 118 1068 144 HOH TIP . D 4 HOH A 119 1069 145 HOH TIP . D 4 HOH A 120 1070 146 HOH TIP . D 4 HOH A 121 1071 147 HOH TIP . D 4 HOH A 122 1072 148 HOH TIP . D 4 HOH A 123 1073 149 HOH TIP . D 4 HOH A 124 1074 150 HOH TIP . D 4 HOH A 125 1075 152 HOH TIP . D 4 HOH A 126 1076 153 HOH TIP . D 4 HOH A 127 1077 154 HOH TIP . D 4 HOH A 128 1078 155 HOH TIP . D 4 HOH A 129 1079 156 HOH TIP . D 4 HOH A 130 1080 157 HOH TIP . D 4 HOH A 131 1081 158 HOH TIP . D 4 HOH A 132 1082 159 HOH TIP . D 4 HOH A 133 1083 160 HOH TIP . D 4 HOH A 134 1084 161 HOH TIP . D 4 HOH A 135 1085 162 HOH TIP . D 4 HOH A 136 1086 163 HOH TIP . D 4 HOH A 137 1087 164 HOH TIP . D 4 HOH A 138 1088 165 HOH TIP . D 4 HOH A 139 1089 166 HOH TIP . D 4 HOH A 140 1090 168 HOH TIP . D 4 HOH A 141 1091 169 HOH TIP . D 4 HOH A 142 1092 170 HOH TIP . D 4 HOH A 143 1093 171 HOH TIP . D 4 HOH A 144 1094 172 HOH TIP . D 4 HOH A 145 1095 173 HOH TIP . D 4 HOH A 146 1096 175 HOH TIP . D 4 HOH A 147 1097 176 HOH TIP . D 4 HOH A 148 1098 177 HOH TIP . D 4 HOH A 149 1099 178 HOH TIP . D 4 HOH A 150 1100 179 HOH TIP . D 4 HOH A 151 1101 180 HOH TIP . D 4 HOH A 152 1102 181 HOH TIP . D 4 HOH A 153 1103 183 HOH TIP . D 4 HOH A 154 1104 184 HOH TIP . D 4 HOH A 155 1105 185 HOH TIP . D 4 HOH A 156 1106 187 HOH TIP . D 4 HOH A 157 1107 188 HOH TIP . D 4 HOH A 158 1108 189 HOH TIP . D 4 HOH A 159 1109 190 HOH TIP . D 4 HOH A 160 1110 191 HOH TIP . D 4 HOH A 161 1111 192 HOH TIP . D 4 HOH A 162 1112 193 HOH TIP . E 4 HOH B 1 186 186 HOH TIP . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 3 _atom_site.Cartn_x -1.105 _atom_site.Cartn_y 70.404 _atom_site.Cartn_z 64.938 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 51.81 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 950 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 48 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 302 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #