data_1PD1
#
_model_server_result.job_id            FyXWi24mImCCWZwwI4yxEA 
_model_server_result.datetime_utc      '2025-03-13 17:00:01' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1pd1 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":950}' 
#
_entry.id    1PD1 
#
_exptl.entry_id    1PD1 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              65.409 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'ZINC ION' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            1PD1 
_cell.length_a            93.949 
_cell.length_b            93.949 
_cell.length_c            199.927 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1PD1 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        154 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 32 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A SG CYS 115 A CYS 231 1_555 C ZN ZN . A ZN 950 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.56 ? 
metalc ? metalc2 A SG CYS 118 A CYS 234 1_555 C ZN ZN . A ZN 950 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.43 ? 
metalc ? metalc3 A SG CYS 137 A CYS 253 1_555 C ZN ZN . A ZN 950 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.337 ? 
metalc ? metalc4 A SG CYS 140 A CYS 256 1_555 C ZN ZN . A ZN 950 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.461 ? 
#
_chem_comp.formula           'Zn 2' 
_chem_comp.formula_weight    65.409 
_chem_comp.id                ZN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'ZINC ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     1PD1 
_atom_sites.fract_transf_matrix[1][1]    0.010644 
_atom_sites.fract_transf_matrix[1][2]    0.006145 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012291 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005002 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 ZN A 1 950 950 ZN ZN . 
D 4 HOH A 1 951 3 HOH HOH . 
D 4 HOH A 2 952 6 HOH HOH . 
D 4 HOH A 3 953 8 HOH HOH . 
D 4 HOH A 4 954 9 HOH HOH . 
D 4 HOH A 5 955 10 HOH HOH . 
D 4 HOH A 6 956 12 HOH HOH . 
D 4 HOH A 7 957 13 HOH HOH . 
D 4 HOH A 8 958 14 HOH HOH . 
D 4 HOH A 9 959 15 HOH HOH . 
D 4 HOH A 10 960 16 HOH HOH . 
D 4 HOH A 11 961 17 HOH HOH . 
D 4 HOH A 12 962 18 HOH HOH . 
D 4 HOH A 13 963 19 HOH HOH . 
D 4 HOH A 14 964 20 HOH HOH . 
D 4 HOH A 15 965 21 HOH HOH . 
D 4 HOH A 16 966 23 HOH HOH . 
D 4 HOH A 17 967 24 HOH HOH . 
D 4 HOH A 18 968 25 HOH HOH . 
D 4 HOH A 19 969 26 HOH HOH . 
D 4 HOH A 20 970 27 HOH HOH . 
D 4 HOH A 21 971 29 HOH HOH . 
D 4 HOH A 22 972 30 HOH HOH . 
D 4 HOH A 23 973 31 HOH HOH . 
D 4 HOH A 24 974 32 HOH HOH . 
D 4 HOH A 25 975 33 HOH HOH . 
D 4 HOH A 26 976 34 HOH HOH . 
D 4 HOH A 27 977 35 HOH HOH . 
D 4 HOH A 28 978 37 HOH HOH . 
D 4 HOH A 29 979 38 HOH HOH . 
D 4 HOH A 30 980 39 HOH HOH . 
D 4 HOH A 31 981 40 HOH HOH . 
D 4 HOH A 32 982 41 HOH HOH . 
D 4 HOH A 33 983 42 HOH HOH . 
D 4 HOH A 34 984 43 HOH HOH . 
D 4 HOH A 35 985 45 HOH HOH . 
D 4 HOH A 36 986 46 HOH HOH . 
D 4 HOH A 37 987 47 HOH HOH . 
D 4 HOH A 38 988 48 HOH HOH . 
D 4 HOH A 39 989 49 HOH HOH . 
D 4 HOH A 40 990 50 HOH HOH . 
D 4 HOH A 41 991 51 HOH HOH . 
D 4 HOH A 42 992 52 HOH HOH . 
D 4 HOH A 43 993 53 HOH HOH . 
D 4 HOH A 44 994 54 HOH HOH . 
D 4 HOH A 45 995 55 HOH HOH . 
D 4 HOH A 46 996 56 HOH HOH . 
D 4 HOH A 47 997 57 HOH HOH . 
D 4 HOH A 48 998 58 HOH HOH . 
D 4 HOH A 49 999 59 HOH HOH . 
D 4 HOH A 50 1000 60 HOH HOH . 
D 4 HOH A 51 1001 61 HOH HOH . 
D 4 HOH A 52 1002 62 HOH HOH . 
D 4 HOH A 53 1003 63 HOH HOH . 
D 4 HOH A 54 1004 65 HOH HOH . 
D 4 HOH A 55 1005 66 HOH HOH . 
D 4 HOH A 56 1006 67 HOH HOH . 
D 4 HOH A 57 1007 68 HOH HOH . 
D 4 HOH A 58 1008 69 HOH HOH . 
D 4 HOH A 59 1009 70 HOH HOH . 
D 4 HOH A 60 1010 71 HOH HOH . 
D 4 HOH A 61 1011 72 HOH HOH . 
D 4 HOH A 62 1012 73 HOH HOH . 
D 4 HOH A 63 1013 74 HOH HOH . 
D 4 HOH A 64 1014 75 HOH HOH . 
D 4 HOH A 65 1015 76 HOH HOH . 
D 4 HOH A 66 1016 77 HOH HOH . 
D 4 HOH A 67 1017 78 HOH HOH . 
D 4 HOH A 68 1018 79 HOH HOH . 
D 4 HOH A 69 1019 80 HOH HOH . 
D 4 HOH A 70 1020 81 HOH HOH . 
D 4 HOH A 71 1021 82 HOH HOH . 
D 4 HOH A 72 1022 83 HOH HOH . 
D 4 HOH A 73 1023 84 HOH HOH . 
D 4 HOH A 74 1024 85 HOH HOH . 
D 4 HOH A 75 1025 86 HOH HOH . 
D 4 HOH A 76 1026 87 HOH HOH . 
D 4 HOH A 77 1027 89 HOH HOH . 
D 4 HOH A 78 1028 90 HOH HOH . 
D 4 HOH A 79 1029 91 HOH HOH . 
D 4 HOH A 80 1030 92 HOH HOH . 
D 4 HOH A 81 1031 93 HOH HOH . 
D 4 HOH A 82 1032 94 HOH HOH . 
D 4 HOH A 83 1033 95 HOH HOH . 
D 4 HOH A 84 1034 96 HOH HOH . 
D 4 HOH A 85 1035 97 HOH HOH . 
D 4 HOH A 86 1036 98 HOH HOH . 
D 4 HOH A 87 1037 99 HOH HOH . 
D 4 HOH A 88 1038 100 HOH HOH . 
D 4 HOH A 89 1039 101 HOH HOH . 
D 4 HOH A 90 1040 102 HOH HOH . 
D 4 HOH A 91 1041 103 HOH HOH . 
D 4 HOH A 92 1042 104 HOH HOH . 
D 4 HOH A 93 1043 105 HOH HOH . 
D 4 HOH A 94 1044 107 HOH HOH . 
D 4 HOH A 95 1045 109 HOH HOH . 
D 4 HOH A 96 1046 110 HOH HOH . 
D 4 HOH A 97 1047 111 HOH HOH . 
D 4 HOH A 98 1048 112 HOH HOH . 
D 4 HOH A 99 1049 113 HOH HOH . 
D 4 HOH A 100 1050 114 HOH HOH . 
D 4 HOH A 101 1051 115 HOH HOH . 
D 4 HOH A 102 1052 116 HOH HOH . 
D 4 HOH A 103 1053 117 HOH HOH . 
D 4 HOH A 104 1054 118 HOH HOH . 
D 4 HOH A 105 1055 120 HOH HOH . 
D 4 HOH A 106 1056 121 HOH HOH . 
D 4 HOH A 107 1057 122 HOH HOH . 
D 4 HOH A 108 1058 123 HOH HOH . 
D 4 HOH A 109 1059 124 HOH HOH . 
D 4 HOH A 110 1060 125 HOH HOH . 
D 4 HOH A 111 1061 127 HOH HOH . 
D 4 HOH A 112 1062 128 HOH HOH . 
D 4 HOH A 113 1063 130 HOH HOH . 
D 4 HOH A 114 1064 131 HOH HOH . 
D 4 HOH A 115 1065 132 HOH HOH . 
D 4 HOH A 116 1066 133 HOH HOH . 
D 4 HOH A 117 1067 135 HOH HOH . 
D 4 HOH A 118 1068 136 HOH HOH . 
D 4 HOH A 119 1069 137 HOH HOH . 
D 4 HOH A 120 1070 138 HOH HOH . 
D 4 HOH A 121 1071 139 HOH HOH . 
D 4 HOH A 122 1072 140 HOH HOH . 
D 4 HOH A 123 1073 141 HOH HOH . 
D 4 HOH A 124 1074 142 HOH HOH . 
D 4 HOH A 125 1075 143 HOH HOH . 
D 4 HOH A 126 1076 144 HOH HOH . 
D 4 HOH A 127 1077 145 HOH HOH . 
D 4 HOH A 128 1078 146 HOH HOH . 
D 4 HOH A 129 1079 147 HOH HOH . 
D 4 HOH A 130 1080 148 HOH HOH . 
D 4 HOH A 131 1081 149 HOH HOH . 
D 4 HOH A 132 1082 150 HOH HOH . 
D 4 HOH A 133 1083 151 HOH HOH . 
D 4 HOH A 134 1084 152 HOH HOH . 
D 4 HOH A 135 1085 153 HOH HOH . 
D 4 HOH A 136 1086 154 HOH HOH . 
D 4 HOH A 137 1087 155 HOH HOH . 
D 4 HOH A 138 1088 156 HOH HOH . 
D 4 HOH A 139 1089 157 HOH HOH . 
D 4 HOH A 140 1090 158 HOH HOH . 
D 4 HOH A 141 1091 159 HOH HOH . 
D 4 HOH A 142 1092 160 HOH HOH . 
D 4 HOH A 143 1093 161 HOH HOH . 
D 4 HOH A 144 1094 162 HOH HOH . 
D 4 HOH A 145 1095 163 HOH HOH . 
D 4 HOH A 146 1096 164 HOH HOH . 
D 4 HOH A 147 1097 165 HOH HOH . 
D 4 HOH A 148 1098 166 HOH HOH . 
D 4 HOH A 149 1099 167 HOH HOH . 
D 4 HOH A 150 1100 168 HOH HOH . 
D 4 HOH A 151 1101 169 HOH HOH . 
D 4 HOH A 152 1102 170 HOH HOH . 
D 4 HOH A 153 1103 171 HOH HOH . 
D 4 HOH A 154 1104 172 HOH HOH . 
D 4 HOH A 155 1105 173 HOH HOH . 
D 4 HOH A 156 1106 175 HOH HOH . 
D 4 HOH A 157 1107 176 HOH HOH . 
D 4 HOH A 158 1108 177 HOH HOH . 
D 4 HOH A 159 1109 178 HOH HOH . 
D 4 HOH A 160 1110 179 HOH HOH . 
D 4 HOH A 161 1111 180 HOH HOH . 
D 4 HOH A 162 1112 181 HOH HOH . 
D 4 HOH A 163 1113 183 HOH HOH . 
D 4 HOH A 164 1114 184 HOH HOH . 
D 4 HOH A 165 1115 185 HOH HOH . 
E 4 HOH B 1 182 182 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           ZN 
_atom_site.label_atom_id         ZN 
_atom_site.label_comp_id         ZN 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         C 
_atom_site.label_entity_id       3 
_atom_site.Cartn_x               -1.073 
_atom_site.Cartn_y               70.181 
_atom_site.Cartn_z               65.397 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        39.29 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          ZN 
_atom_site.auth_comp_id          ZN 
_atom_site.auth_seq_id           950 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              50 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    8 
_model_server_stats.query_time_ms           278 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           1 
#